Wall clock time and date at job start Mon Mar 30 2020 01:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99752 * 2 1 4 4 H 1.48505 * 109.46976 * 270.00404 * 3 2 1 5 5 H 1.48497 * 109.47271 * 30.00422 * 3 2 1 6 6 H 1.48498 * 109.46826 * 150.00680 * 3 2 1 7 7 C 1.37876 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99907 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99901 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.47363 * 299.99789 * 9 7 2 11 11 O 1.42900 * 109.47405 * 59.99723 * 9 7 2 12 12 C 1.53000 * 109.47405 * 179.97438 * 9 7 2 13 13 N 1.46892 * 109.47495 * 181.28520 * 12 9 7 14 14 C 1.46843 * 111.00340 * 183.82766 * 13 12 9 15 15 C 1.53038 * 109.51997 * 185.84373 * 14 13 12 16 16 C 1.53114 * 109.27973 * 300.80977 * 15 14 13 17 17 C 1.53124 * 109.15384 * 57.66291 * 16 15 14 18 18 H 1.08995 * 109.53234 * 62.30112 * 17 16 15 19 19 O 1.42905 * 109.50257 * 182.40090 * 17 16 15 20 20 C 1.42900 * 113.99974 * 269.80404 * 19 17 16 21 21 C 1.53780 * 113.61510 * 247.50013 * 20 19 17 22 22 C 1.53781 * 87.07930 * 220.01940 * 21 20 19 23 23 C 1.53776 * 113.61361 * 149.99874 * 20 19 17 24 24 C 1.46845 * 111.00007 * 308.03944 * 13 12 9 25 25 H 0.96999 * 120.00196 * 359.97438 * 1 2 3 26 26 H 0.96695 * 113.99770 * 59.99615 * 11 9 7 27 27 H 1.09006 * 109.46905 * 61.28448 * 12 9 7 28 28 H 1.08998 * 109.46625 * 301.28908 * 12 9 7 29 29 H 1.08999 * 109.46555 * 305.86057 * 14 13 12 30 30 H 1.09006 * 109.45941 * 65.83360 * 14 13 12 31 31 H 1.08998 * 109.50008 * 60.75732 * 15 14 13 32 32 H 1.08995 * 109.50193 * 180.87213 * 15 14 13 33 33 H 1.09006 * 109.52718 * 297.76527 * 16 15 14 34 34 H 1.08994 * 109.58060 * 177.59822 * 16 15 14 35 35 H 1.09000 * 112.84649 * 18.80744 * 20 19 17 36 36 H 1.09000 * 113.61125 * 334.56743 * 21 20 19 37 37 H 1.09000 * 113.61638 * 105.47006 * 21 20 19 38 38 H 1.08996 * 113.61510 * 270.88115 * 22 21 20 39 39 H 1.09003 * 113.69109 * 139.98800 * 22 21 20 40 40 H 1.08994 * 113.61994 * 254.53044 * 23 20 19 41 41 H 1.09001 * 113.61405 * 25.43357 * 23 20 19 42 42 H 1.08999 * 109.46337 * 294.17487 * 24 13 12 43 43 H 1.09002 * 109.46666 * 54.15364 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 1 3.8746 -0.6800 -0.8912 11 8 3.9884 -0.5206 1.1656 12 6 4.0216 -2.6365 -0.0010 13 7 5.4902 -2.6366 0.0295 14 6 6.0185 -4.0038 -0.0610 15 6 7.5379 -3.9779 0.1198 16 6 8.1613 -3.0972 -0.9665 17 6 7.5588 -1.6921 -0.8812 18 1 7.8020 -1.2493 0.0846 19 8 8.0943 -0.8790 -1.9274 20 6 9.2839 -0.1749 -1.5651 21 6 9.0985 1.3499 -1.4902 22 6 10.4835 1.4715 -2.1473 23 6 10.2344 0.0777 -2.7473 24 6 6.0387 -1.7841 -1.0329 25 1 -0.4850 0.8400 0.0004 26 1 3.7034 -0.9242 1.9967 27 1 3.6769 -3.1438 -0.9021 28 1 3.6399 -3.1567 0.8775 29 1 5.5703 -4.6187 0.7194 30 1 5.7760 -4.4228 -1.0376 31 1 7.7806 -3.5716 1.1016 32 1 7.9315 -4.9910 0.0371 33 1 7.9514 -3.5246 -1.9471 34 1 9.2395 -3.0409 -0.8169 35 1 9.7775 -0.5996 -0.6910 36 1 8.2853 1.7220 -2.1134 37 1 9.0631 1.7359 -0.4714 38 1 11.3054 1.4984 -1.4319 39 1 10.5461 2.2634 -2.8938 40 1 11.1159 -0.5632 -2.7435 41 1 9.7317 0.1020 -3.7142 42 1 5.7961 -2.2136 -2.0049 43 1 5.6055 -0.7866 -0.9583 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930887058.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:07 Heat of formation + Delta-G solvation = -73.510614 kcal Electronic energy + Delta-G solvation = -21750.748169 eV Core-core repulsion = 18603.545352 eV Total energy + Delta-G solvation = -3147.202818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.68466 -38.51399 -36.34600 -35.25726 -32.53689 -32.20512 -29.74321 -28.47135 -25.75629 -25.40024 -24.80909 -23.12407 -22.28656 -20.21468 -19.96004 -19.30811 -17.54030 -16.97707 -15.87118 -15.35585 -14.87693 -14.78711 -14.62100 -14.58134 -14.27618 -13.84761 -13.39172 -13.08311 -12.80890 -12.59273 -12.52574 -12.43713 -12.26795 -11.55333 -11.41798 -11.33640 -11.04498 -10.94594 -10.89859 -10.75675 -10.53933 -10.40743 -10.37905 -10.19794 -9.80800 -9.25807 -8.92913 -8.59579 -8.19815 -7.81991 -6.11149 -4.22222 3.41416 3.50694 3.59091 3.78071 4.43795 4.48855 4.55988 4.57139 4.75213 4.79776 4.89459 5.00312 5.05397 5.24358 5.24913 5.37244 5.49036 5.56277 5.64392 5.68454 5.72333 5.78238 5.83592 5.87278 5.89197 5.90295 6.01862 6.07625 6.10459 6.14230 6.18063 6.26189 6.36856 6.45056 6.65429 7.26088 7.40248 7.41771 7.62054 7.70647 8.31490 8.85448 9.12321 9.53975 10.99535 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.005779 C = 0.004537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.063325 B = 4843.598732 C = 6170.066557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.084 3.916 3 Si 0.869 3.131 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.215 1.215 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.196 3.804 10 H 0.055 0.945 11 O -0.571 6.571 12 C 0.042 3.958 13 N -0.527 5.527 14 C 0.051 3.949 15 C -0.112 4.112 16 C -0.140 4.140 17 C 0.094 3.906 18 H 0.069 0.931 19 O -0.369 6.369 20 C 0.065 3.935 21 C -0.158 4.158 22 C -0.142 4.142 23 C -0.138 4.138 24 C 0.058 3.942 25 H 0.265 0.735 26 H 0.356 0.644 27 H 0.032 0.968 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.089 0.911 42 H 0.033 0.967 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.557 -3.311 -1.761 20.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.120 4.120 3 Si 0.695 3.305 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.137 1.137 7 C -0.603 4.603 8 H 0.089 0.911 9 C 0.138 3.862 10 H 0.072 0.928 11 O -0.377 6.377 12 C -0.085 4.085 13 N -0.253 5.253 14 C -0.078 4.078 15 C -0.150 4.150 16 C -0.178 4.178 17 C 0.036 3.964 18 H 0.087 0.913 19 O -0.287 6.287 20 C 0.007 3.993 21 C -0.196 4.196 22 C -0.180 4.180 23 C -0.175 4.175 24 C -0.070 4.070 25 H 0.074 0.926 26 H 0.202 0.798 27 H 0.050 0.950 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.108 0.892 42 H 0.052 0.948 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.749 -2.624 -1.948 21.005 hybrid contribution -0.301 -0.005 -0.299 0.424 sum 20.449 -2.628 -2.247 20.739 Atomic orbital electron populations 1.69960 1.06784 1.27446 1.48911 1.24972 0.94590 0.99942 0.92479 0.87056 0.83198 0.81819 0.78405 1.21446 1.22255 1.13727 1.21510 0.89881 0.94821 1.54117 0.91062 1.19801 0.93308 0.86962 0.86085 0.92772 1.86646 1.77918 1.56968 1.16132 1.22811 0.84128 1.01167 1.00385 1.61848 1.08520 1.08783 1.46142 1.22121 0.94849 0.90871 0.99937 1.21518 0.95114 0.99126 0.99249 1.22102 0.99613 0.96306 0.99733 1.22116 0.93874 0.89831 0.90529 0.91301 1.87936 1.41075 1.61414 1.38273 1.23713 0.86410 0.91613 0.97598 1.23495 0.97694 0.96756 1.01668 1.22653 0.97461 0.97480 1.00385 1.23209 0.98550 0.96658 0.99096 1.22049 0.92388 0.99924 0.92680 0.92604 0.79845 0.94999 0.90875 0.90857 0.95343 0.91134 0.91651 0.91650 0.92256 0.89818 0.89109 0.91269 0.90202 0.90917 0.91362 0.89250 0.94848 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.96 55.43 0.77 -26.68 16 2 C 0.08 2.45 5.47 -17.82 -0.10 2.35 16 3 Si 0.87 22.07 26.99 -169.99 -4.59 17.48 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 6 H -0.22 -5.34 5.31 56.52 0.30 -5.04 16 7 C -0.57 -15.76 9.34 -34.44 -0.32 -16.08 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C 0.20 4.59 1.72 -27.88 -0.05 4.54 16 10 H 0.05 1.33 5.70 -51.93 -0.30 1.03 16 11 O -0.57 -13.07 9.98 -35.23 -0.35 -13.42 16 12 C 0.04 0.84 4.73 -3.83 -0.02 0.82 16 13 N -0.53 -9.11 4.60 -234.68 -1.08 -10.19 16 14 C 0.05 0.72 5.46 -3.84 -0.02 0.70 16 15 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 16 C -0.14 -1.73 5.62 -26.61 -0.15 -1.88 16 17 C 0.09 1.39 2.65 -26.65 -0.07 1.32 16 18 H 0.07 1.03 7.72 -51.93 -0.40 0.63 16 19 O -0.37 -5.47 10.00 -35.23 -0.35 -5.83 16 20 C 0.06 0.77 4.14 -25.92 -0.11 0.66 16 21 C -0.16 -1.79 7.91 -25.92 -0.21 -2.00 16 22 C -0.14 -1.28 8.08 -25.92 -0.21 -1.49 16 23 C -0.14 -1.36 7.91 -25.92 -0.21 -1.56 16 24 C 0.06 1.01 4.69 -3.83 -0.02 0.99 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.32 16 26 H 0.36 7.32 9.04 45.56 0.41 7.73 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 0.98 8.12 -51.93 -0.42 0.56 16 30 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.89 7.77 -51.93 -0.40 0.49 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.86 5.87 -51.93 -0.30 1.55 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -30.85 333.38 -9.20 -40.05 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -6.99 Total: 6.68 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.63 Total: -13.12 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: -0.31 Total: -36.87 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.70 Total: -19.24 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.59 Total: 17.48 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.85 -9.20 -40.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930887058.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.460 kcal (2) G-P(sol) polarization free energy of solvation -30.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds