Wall clock time and date at job start Mon Mar 30 2020 01:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00015 * 2 1 4 4 H 1.48503 * 109.47496 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.47383 * 29.99744 * 3 2 1 6 6 H 1.48497 * 109.47469 * 149.99964 * 3 2 1 7 7 C 1.37875 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00539 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99915 * 180.02562 * 7 2 1 10 10 H 1.09008 * 109.46737 * 299.99956 * 9 7 2 11 11 O 1.42895 * 109.47239 * 59.99745 * 9 7 2 12 12 C 1.53001 * 109.47304 * 180.02562 * 9 7 2 13 13 N 1.46900 * 109.47073 * 179.73641 * 12 9 7 14 14 C 1.46846 * 110.99574 * 294.02620 * 13 12 9 15 15 C 1.53039 * 109.51986 * 174.15958 * 14 13 12 16 16 C 1.53121 * 109.27689 * 59.18286 * 15 14 13 17 17 C 1.53119 * 109.16192 * 302.34347 * 16 15 14 18 18 H 1.08995 * 109.50148 * 297.67538 * 17 16 15 19 19 O 1.42893 * 109.50453 * 177.59190 * 17 16 15 20 20 C 1.42902 * 113.99766 * 90.00021 * 19 17 16 21 21 C 1.53781 * 113.61526 * 249.13499 * 20 19 17 22 22 C 1.53956 * 87.01972 * 220.04858 * 21 20 19 23 23 C 1.53777 * 87.10947 * 25.36352 * 22 21 20 24 24 C 1.46839 * 110.99764 * 169.82215 * 13 12 9 25 25 H 0.97001 * 120.00163 * 0.02562 * 1 2 3 26 26 H 0.96702 * 113.99925 * 60.00327 * 11 9 7 27 27 H 1.09000 * 109.47246 * 59.72845 * 12 9 7 28 28 H 1.08998 * 109.46733 * 299.73415 * 12 9 7 29 29 H 1.09005 * 109.46563 * 54.15029 * 14 13 12 30 30 H 1.08997 * 109.46724 * 294.18157 * 14 13 12 31 31 H 1.08995 * 109.50846 * 299.24083 * 15 14 13 32 32 H 1.09001 * 109.50373 * 179.12123 * 15 14 13 33 33 H 1.08999 * 109.52239 * 182.43338 * 16 15 14 34 34 H 1.09000 * 109.57313 * 62.27877 * 16 15 14 35 35 H 1.08999 * 112.85012 * 20.33299 * 20 19 17 36 36 H 1.09000 * 113.61677 * 334.56989 * 21 20 19 37 37 H 1.09007 * 113.61258 * 105.47280 * 21 20 19 38 38 H 1.08999 * 113.53578 * 270.80908 * 22 21 20 39 39 H 1.09003 * 113.66591 * 139.93567 * 22 21 20 40 40 H 1.09003 * 113.61150 * 220.09025 * 23 22 21 41 41 H 1.09001 * 113.69312 * 89.20372 * 23 22 21 42 42 H 1.08999 * 109.46702 * 65.81784 * 24 13 12 43 43 H 1.09003 * 109.46469 * 305.84978 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6805 -0.8889 11 8 3.9874 -0.5202 1.1678 12 6 4.0215 -2.6366 0.0010 13 7 5.4905 -2.6366 -0.0048 14 6 6.0117 -2.0801 -1.2598 15 6 7.5349 -1.9608 -1.1727 16 6 8.1366 -3.3456 -0.9179 17 6 7.5411 -3.9234 0.3690 18 1 7.8083 -3.2859 1.2117 19 8 8.0555 -5.2391 0.5840 20 6 9.2578 -5.2741 1.3555 21 6 10.4970 -5.6919 0.5464 22 6 10.9263 -6.5096 1.7782 23 6 9.4374 -6.5739 2.1575 24 6 6.0176 -3.9856 0.2371 25 1 -0.4850 0.8400 -0.0004 26 1 3.7018 -0.9235 1.9990 27 1 3.6546 -3.1517 -0.8868 28 1 3.6617 -3.1492 0.8931 29 1 5.5792 -1.0935 -1.4269 30 1 5.7456 -2.7379 -2.0871 31 1 7.8015 -1.2921 -0.3542 32 1 7.9230 -1.5623 -2.1100 33 1 9.2180 -3.2590 -0.8121 34 1 7.9041 -4.0043 -1.7547 35 1 9.4071 -4.3714 1.9479 36 1 10.2638 -6.3043 -0.3246 37 1 11.1674 -4.8638 0.3156 38 1 11.5332 -5.9446 2.4857 39 1 11.3563 -7.4802 1.5309 40 1 9.2535 -6.4569 3.2255 41 1 8.9127 -7.4276 1.7287 42 1 5.7515 -4.6346 -0.5971 43 1 5.5895 -4.3833 1.1573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930887059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:09 Heat of formation + Delta-G solvation = -75.156930 kcal Electronic energy + Delta-G solvation = -21399.241404 eV Core-core repulsion = 18251.967197 eV Total energy + Delta-G solvation = -3147.274207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.76737 -38.52655 -36.40815 -35.22910 -32.56376 -32.20557 -29.89154 -28.38525 -25.90391 -25.40307 -24.88624 -22.73077 -22.67068 -20.36079 -20.01915 -19.36107 -17.50477 -17.00419 -15.98670 -15.33662 -15.01149 -14.83652 -14.64659 -14.51398 -14.35157 -13.65476 -13.52366 -13.22723 -12.85272 -12.66846 -12.56904 -12.46209 -12.35710 -11.58373 -11.51746 -11.29692 -11.08521 -10.97420 -10.89733 -10.73174 -10.55683 -10.49236 -10.45749 -10.22165 -9.81899 -9.36931 -8.98376 -8.60141 -8.22242 -7.78546 -6.11316 -4.22454 3.40427 3.48082 3.50270 3.78074 4.35569 4.38081 4.49060 4.55840 4.63943 4.70366 4.88925 4.92496 5.08517 5.18970 5.24207 5.32702 5.40938 5.49832 5.54581 5.61586 5.65821 5.70290 5.77478 5.83069 5.85240 5.93037 5.96460 6.00128 6.02396 6.11548 6.17608 6.29192 6.31344 6.46741 6.63653 7.21805 7.33686 7.40485 7.60862 7.71092 8.31515 8.85722 9.13945 9.53817 10.99420 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039704 B = 0.003783 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.041218 B = 7399.144516 C = 7636.696153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.083 3.917 3 Si 0.871 3.129 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.215 1.215 7 C -0.566 4.566 8 H 0.071 0.929 9 C 0.202 3.798 10 H 0.053 0.947 11 O -0.570 6.570 12 C 0.042 3.958 13 N -0.527 5.527 14 C 0.051 3.949 15 C -0.114 4.114 16 C -0.137 4.137 17 C 0.094 3.906 18 H 0.069 0.931 19 O -0.370 6.370 20 C 0.065 3.935 21 C -0.158 4.158 22 C -0.143 4.143 23 C -0.138 4.138 24 C 0.060 3.940 25 H 0.265 0.735 26 H 0.354 0.646 27 H 0.033 0.967 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.028 0.972 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.034 0.966 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.832 -9.884 1.516 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.121 4.121 3 Si 0.697 3.303 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.137 1.137 7 C -0.603 4.603 8 H 0.089 0.911 9 C 0.144 3.856 10 H 0.070 0.930 11 O -0.375 6.375 12 C -0.085 4.085 13 N -0.252 5.252 14 C -0.077 4.077 15 C -0.152 4.152 16 C -0.175 4.175 17 C 0.036 3.964 18 H 0.087 0.913 19 O -0.288 6.288 20 C 0.007 3.993 21 C -0.195 4.195 22 C -0.180 4.180 23 C -0.176 4.176 24 C -0.069 4.069 25 H 0.074 0.926 26 H 0.200 0.800 27 H 0.051 0.949 28 H 0.089 0.911 29 H 0.102 0.898 30 H 0.046 0.954 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.052 0.948 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 21.030 -9.278 1.379 23.027 hybrid contribution -0.295 0.078 -0.374 0.482 sum 20.735 -9.201 1.005 22.707 Atomic orbital electron populations 1.69961 1.06806 1.27452 1.48934 1.24987 0.94606 1.00001 0.92520 0.87029 0.83207 0.81730 0.78317 1.21529 1.22293 1.13688 1.21525 0.89941 0.94803 1.54078 0.91103 1.19717 0.92985 0.86888 0.85993 0.92982 1.86653 1.77932 1.56896 1.16056 1.22829 0.83997 1.01173 1.00485 1.61855 1.09377 1.19676 1.34314 1.22143 0.94583 1.00744 0.90212 1.21541 0.95289 0.96405 1.01921 1.22086 0.99768 0.97216 0.98473 1.22156 0.93857 0.83228 0.97118 0.91321 1.87914 1.40480 1.28019 1.72392 1.23771 0.84607 0.98132 0.92834 1.23530 0.97554 1.00293 0.98153 1.22688 0.96325 1.00801 0.98193 1.23206 0.96010 0.98289 1.00081 1.21990 0.92886 0.90685 1.01298 0.92606 0.80019 0.94901 0.91147 0.89829 0.95365 0.90995 0.91557 0.92159 0.91719 0.89636 0.89392 0.91498 0.90105 0.90928 0.91083 0.89238 0.94778 0.90535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.96 55.43 0.77 -26.64 16 2 C 0.08 2.40 5.47 -17.82 -0.10 2.30 16 3 Si 0.87 21.88 26.99 -169.99 -4.59 17.29 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 5 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 6 H -0.21 -5.28 5.31 56.52 0.30 -4.98 16 7 C -0.57 -15.69 9.34 -34.44 -0.32 -16.01 16 8 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 9 C 0.20 4.70 2.19 -27.88 -0.06 4.64 16 10 H 0.05 1.25 5.85 -51.92 -0.30 0.95 16 11 O -0.57 -13.02 10.01 -35.23 -0.35 -13.38 16 12 C 0.04 0.84 4.56 -3.82 -0.02 0.82 16 13 N -0.53 -9.06 4.53 -234.67 -1.06 -10.12 16 14 C 0.05 0.82 5.29 -3.83 -0.02 0.80 16 15 C -0.11 -1.48 6.09 -26.65 -0.16 -1.65 16 16 C -0.14 -1.68 5.62 -26.61 -0.15 -1.83 16 17 C 0.09 1.25 2.77 -26.65 -0.07 1.17 16 18 H 0.07 0.92 7.43 -51.93 -0.39 0.53 16 19 O -0.37 -4.78 10.00 -35.23 -0.35 -5.13 16 20 C 0.06 0.66 4.25 -25.92 -0.11 0.55 16 21 C -0.16 -1.37 7.93 -25.83 -0.20 -1.57 16 22 C -0.14 -1.05 8.09 -25.83 -0.21 -1.26 16 23 C -0.14 -1.21 7.91 -25.92 -0.21 -1.41 16 24 C 0.06 0.91 5.11 -3.83 -0.02 0.89 16 25 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.35 7.29 9.04 45.56 0.41 7.70 16 27 H 0.03 0.66 8.12 -51.93 -0.42 0.24 16 28 H 0.07 1.38 7.98 -51.93 -0.41 0.96 16 29 H 0.08 1.47 6.21 -51.93 -0.32 1.14 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.82 7.47 -51.93 -0.39 0.43 16 36 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.08 1.16 8.01 -51.93 -0.42 0.74 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -30.70 333.76 -9.17 -39.87 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.97 Total: 5.63 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -1.65 Total: -12.56 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: -0.29 Total: -36.76 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.71 Total: -18.51 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.59 Total: 17.29 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.70 -9.17 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930887059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.283 kcal (2) G-P(sol) polarization free energy of solvation -30.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds