Wall clock time and date at job start Mon Mar 30 2020 01:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00015 * 2 1 4 4 H 1.48503 * 109.47496 * 269.99822 * 3 2 1 5 5 H 1.48502 * 109.47383 * 29.99744 * 3 2 1 6 6 H 1.48497 * 109.47469 * 149.99964 * 3 2 1 7 7 C 1.37875 * 119.99733 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00539 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99915 * 180.02562 * 7 2 1 10 10 H 1.09008 * 109.46737 * 299.99956 * 9 7 2 11 11 O 1.42895 * 109.47239 * 59.99745 * 9 7 2 12 12 C 1.53001 * 109.47304 * 180.02562 * 9 7 2 13 13 N 1.46900 * 109.47073 * 179.73641 * 12 9 7 14 14 C 1.46846 * 110.99574 * 294.02620 * 13 12 9 15 15 C 1.53039 * 109.51986 * 174.15958 * 14 13 12 16 16 C 1.53121 * 109.27689 * 59.18286 * 15 14 13 17 17 C 1.53119 * 109.16192 * 302.34347 * 16 15 14 18 18 H 1.08995 * 109.50148 * 297.67538 * 17 16 15 19 19 O 1.42893 * 109.50453 * 177.59190 * 17 16 15 20 20 C 1.42902 * 113.99766 * 90.00021 * 19 17 16 21 21 C 1.53781 * 113.61526 * 249.13499 * 20 19 17 22 22 C 1.53956 * 87.01972 * 220.04858 * 21 20 19 23 23 C 1.53777 * 87.10947 * 25.36352 * 22 21 20 24 24 C 1.46839 * 110.99764 * 169.82215 * 13 12 9 25 25 H 0.97001 * 120.00163 * 0.02562 * 1 2 3 26 26 H 0.96702 * 113.99925 * 60.00327 * 11 9 7 27 27 H 1.09000 * 109.47246 * 59.72845 * 12 9 7 28 28 H 1.08998 * 109.46733 * 299.73415 * 12 9 7 29 29 H 1.09005 * 109.46563 * 54.15029 * 14 13 12 30 30 H 1.08997 * 109.46724 * 294.18157 * 14 13 12 31 31 H 1.08995 * 109.50846 * 299.24083 * 15 14 13 32 32 H 1.09001 * 109.50373 * 179.12123 * 15 14 13 33 33 H 1.08999 * 109.52239 * 182.43338 * 16 15 14 34 34 H 1.09000 * 109.57313 * 62.27877 * 16 15 14 35 35 H 1.08999 * 112.85012 * 20.33299 * 20 19 17 36 36 H 1.09000 * 113.61677 * 334.56989 * 21 20 19 37 37 H 1.09007 * 113.61258 * 105.47280 * 21 20 19 38 38 H 1.08999 * 113.53578 * 270.80908 * 22 21 20 39 39 H 1.09003 * 113.66591 * 139.93567 * 22 21 20 40 40 H 1.09003 * 113.61150 * 220.09025 * 23 22 21 41 41 H 1.09001 * 113.69312 * 89.20372 * 23 22 21 42 42 H 1.08999 * 109.46702 * 65.81784 * 24 13 12 43 43 H 1.09003 * 109.46469 * 305.84978 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8752 -0.6805 -0.8889 11 8 3.9874 -0.5202 1.1678 12 6 4.0215 -2.6366 0.0010 13 7 5.4905 -2.6366 -0.0048 14 6 6.0117 -2.0801 -1.2598 15 6 7.5349 -1.9608 -1.1727 16 6 8.1366 -3.3456 -0.9179 17 6 7.5411 -3.9234 0.3690 18 1 7.8083 -3.2859 1.2117 19 8 8.0555 -5.2391 0.5840 20 6 9.2578 -5.2741 1.3555 21 6 10.4970 -5.6919 0.5464 22 6 10.9263 -6.5096 1.7782 23 6 9.4374 -6.5739 2.1575 24 6 6.0176 -3.9856 0.2371 25 1 -0.4850 0.8400 -0.0004 26 1 3.7018 -0.9235 1.9990 27 1 3.6546 -3.1517 -0.8868 28 1 3.6617 -3.1492 0.8931 29 1 5.5792 -1.0935 -1.4269 30 1 5.7456 -2.7379 -2.0871 31 1 7.8015 -1.2921 -0.3542 32 1 7.9230 -1.5623 -2.1100 33 1 9.2180 -3.2590 -0.8121 34 1 7.9041 -4.0043 -1.7547 35 1 9.4071 -4.3714 1.9479 36 1 10.2638 -6.3043 -0.3246 37 1 11.1674 -4.8638 0.3156 38 1 11.5332 -5.9446 2.4857 39 1 11.3563 -7.4802 1.5309 40 1 9.2535 -6.4569 3.2255 41 1 8.9127 -7.4276 1.7287 42 1 5.7515 -4.6346 -0.5971 43 1 5.5895 -4.3833 1.1573 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930887059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:08 Heat of formation + Delta-G solvation = -96.988865 kcal Electronic energy + Delta-G solvation = -21400.188108 eV Core-core repulsion = 18251.967197 eV Total energy + Delta-G solvation = -3148.220911 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.74314 -39.61367 -37.87538 -36.46860 -34.40623 -33.81568 -31.13650 -30.08803 -27.12639 -26.50668 -25.71931 -24.13715 -23.86698 -21.91277 -21.08091 -20.28507 -19.40921 -18.06340 -17.04282 -16.81216 -16.49945 -16.28542 -16.18227 -15.65364 -15.41148 -15.17021 -14.88496 -14.71395 -14.46758 -13.74536 -13.59525 -13.45466 -13.34078 -13.22569 -12.91562 -12.67569 -12.50542 -12.33457 -12.11641 -11.96686 -11.86983 -11.66602 -11.50303 -11.30319 -11.21090 -10.97041 -10.79963 -10.29749 -10.08714 -9.21799 -8.35326 -6.50247 1.40591 1.46271 1.77302 2.44643 2.45682 3.03085 3.23472 3.67443 3.72482 3.82800 3.86158 3.98252 4.00967 4.03294 4.11545 4.20700 4.25324 4.42984 4.45308 4.51418 4.55447 4.68724 4.76611 4.83482 4.87606 4.89727 4.94300 4.99578 5.02775 5.06377 5.06712 5.14860 5.27007 5.35715 5.45350 5.47532 5.48527 6.07261 6.10591 6.16578 6.44219 6.62607 7.22950 7.38407 8.79040 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.039704 B = 0.003783 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.041218 B = 7399.144516 C = 7636.696153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.028 3.972 3 Si 0.940 3.060 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.035 0.965 9 C 0.212 3.788 10 H 0.051 0.949 11 O -0.571 6.571 12 C 0.054 3.946 13 N -0.528 5.528 14 C 0.046 3.954 15 C -0.106 4.106 16 C -0.131 4.131 17 C 0.101 3.899 18 H 0.070 0.930 19 O -0.386 6.386 20 C 0.051 3.949 21 C -0.155 4.155 22 C -0.132 4.132 23 C -0.141 4.141 24 C 0.060 3.940 25 H 0.267 0.733 26 H 0.365 0.635 27 H 0.023 0.977 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.027 0.973 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.891 -9.561 1.782 25.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.172 4.172 3 Si 0.764 3.236 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.125 1.125 7 C -0.606 4.606 8 H 0.053 0.947 9 C 0.154 3.846 10 H 0.068 0.932 11 O -0.377 6.377 12 C -0.074 4.074 13 N -0.253 5.253 14 C -0.082 4.082 15 C -0.144 4.144 16 C -0.168 4.168 17 C 0.043 3.957 18 H 0.088 0.912 19 O -0.304 6.304 20 C -0.006 4.006 21 C -0.193 4.193 22 C -0.169 4.169 23 C -0.179 4.179 24 C -0.068 4.068 25 H 0.076 0.924 26 H 0.212 0.788 27 H 0.041 0.959 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.046 0.954 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 24.113 -8.978 1.651 25.783 hybrid contribution -1.276 -0.135 -0.433 1.354 sum 22.837 -9.113 1.218 24.618 Atomic orbital electron populations 1.70087 1.08558 1.28447 1.50937 1.25870 0.95270 1.03713 0.92329 0.85973 0.82060 0.77204 0.78404 1.21132 1.22424 1.12452 1.21856 0.92473 0.93305 1.52962 0.94706 1.19473 0.90039 0.88975 0.86124 0.93181 1.86583 1.77588 1.57128 1.16407 1.22507 0.86148 0.98683 1.00039 1.61807 1.07337 1.21015 1.35180 1.22232 0.96754 0.99624 0.89580 1.21502 0.92811 0.97009 1.03030 1.22029 1.00799 0.96382 0.97629 1.22009 0.92184 0.83679 0.97788 0.91229 1.87897 1.41815 1.27667 1.73058 1.24083 0.84105 0.99074 0.93385 1.23500 0.96896 1.00680 0.98228 1.22683 0.95421 1.01254 0.97585 1.23236 0.97148 0.97284 1.00235 1.22003 0.94702 0.89272 1.00796 0.92426 0.78754 0.95886 0.91273 0.91465 0.95384 0.91142 0.89437 0.90159 0.92093 0.88929 0.90187 0.90518 0.88732 0.90051 0.90467 0.90120 0.95434 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 2 C 0.03 1.61 5.47 84.65 0.46 2.08 16 3 Si 0.94 45.27 26.99 68.60 1.85 47.12 16 4 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 6 H -0.20 -9.31 5.31 99.48 0.53 -8.78 16 7 C -0.57 -32.05 9.34 25.60 0.24 -31.81 16 8 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 9 C 0.21 9.77 2.19 29.85 0.07 9.84 16 10 H 0.05 2.37 5.85 -2.38 -0.01 2.35 16 11 O -0.57 -25.13 10.01 -148.98 -1.49 -26.63 16 12 C 0.05 2.15 4.56 86.30 0.39 2.54 16 13 N -0.53 -17.65 4.53 -896.36 -4.06 -21.70 16 14 C 0.05 1.41 5.29 86.33 0.46 1.86 16 15 C -0.11 -2.49 6.09 30.65 0.19 -2.30 16 16 C -0.13 -2.85 5.62 30.67 0.17 -2.68 16 17 C 0.10 2.49 2.77 30.65 0.08 2.58 16 18 H 0.07 1.70 7.43 -2.39 -0.02 1.69 16 19 O -0.39 -9.37 10.00 -148.98 -1.49 -10.86 16 20 C 0.05 0.93 4.25 31.12 0.13 1.06 16 21 C -0.16 -2.31 7.93 31.18 0.25 -2.07 16 22 C -0.13 -1.59 8.09 31.18 0.25 -1.34 16 23 C -0.14 -2.22 7.91 31.12 0.25 -1.98 16 24 C 0.06 1.78 5.11 86.33 0.44 2.22 16 25 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 26 H 0.37 14.50 9.04 -74.06 -0.67 13.83 16 27 H 0.02 0.95 8.12 -2.39 -0.02 0.93 16 28 H 0.07 2.72 7.98 -2.39 -0.02 2.70 16 29 H 0.07 2.28 6.21 -2.38 -0.01 2.26 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.09 1.55 7.47 -2.39 -0.02 1.53 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 2.18 8.01 -2.39 -0.02 2.16 16 Total: -1.00 -65.58 333.76 -1.38 -66.96 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: 0.12 Total: 23.65 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 3.38 Total: -19.98 kcal Atomic # 7 Polarization: -76.51 SS G_CDS: -3.76 Total: -80.27 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -2.98 Total: -37.48 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.85 Total: 47.12 kcal Total: -65.58 -1.38 -66.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930887059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.028 kcal (2) G-P(sol) polarization free energy of solvation -65.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds