Wall clock time and date at job start Mon Mar 30 2020 01:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86806 * 119.99803 * 2 1 4 4 H 1.48501 * 109.46808 * 269.99563 * 3 2 1 5 5 H 1.48501 * 109.47297 * 29.99743 * 3 2 1 6 6 H 1.48498 * 109.46794 * 150.00060 * 3 2 1 7 7 C 1.37880 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99903 * 359.97438 * 7 2 1 9 9 C 1.50695 * 119.99933 * 180.02562 * 7 2 1 10 10 H 1.08999 * 109.53976 * 59.89733 * 9 7 2 11 11 C 1.53127 * 109.50186 * 299.79966 * 9 7 2 12 12 C 1.53123 * 109.15019 * 182.40207 * 11 9 7 13 13 C 1.53034 * 109.27992 * 57.67185 * 12 11 9 14 14 N 1.46847 * 109.51345 * 300.80438 * 13 12 11 15 15 C 1.46895 * 110.99982 * 185.84805 * 14 13 12 16 16 C 1.52999 * 109.47142 * 293.95107 * 15 14 13 17 17 H 1.09002 * 109.46885 * 305.00101 * 16 15 14 18 18 O 1.42902 * 109.47137 * 64.99670 * 16 15 14 19 19 C 1.52998 * 109.47477 * 184.99842 * 16 15 14 20 20 O 1.42904 * 112.84570 * 55.33464 * 19 16 15 21 21 C 1.53778 * 113.61519 * 284.13908 * 19 16 15 22 22 C 1.53960 * 87.01842 * 220.04585 * 21 19 16 23 23 C 1.53784 * 113.61676 * 186.52475 * 19 16 15 24 24 C 1.46843 * 111.20124 * 61.74903 * 14 13 12 25 25 H 0.96995 * 120.00116 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.52393 * 302.31016 * 11 9 7 27 27 H 1.08997 * 109.52177 * 62.44105 * 11 9 7 28 28 H 1.08997 * 109.51083 * 297.71779 * 12 11 9 29 29 H 1.08998 * 109.48980 * 177.60711 * 12 11 9 30 30 H 1.09002 * 109.46271 * 180.79158 * 13 12 11 31 31 H 1.08994 * 109.46242 * 60.81457 * 13 12 11 32 32 H 1.09006 * 109.47384 * 53.94736 * 15 14 13 33 33 H 1.09000 * 109.47655 * 173.95019 * 15 14 13 34 34 H 0.96705 * 113.99682 * 60.00910 * 18 16 15 35 35 H 0.96704 * 113.99989 * 179.97438 * 20 19 16 36 36 H 1.08997 * 113.61389 * 334.56485 * 21 19 16 37 37 H 1.09000 * 113.61508 * 105.46824 * 21 19 16 38 38 H 1.09002 * 113.53797 * 270.81211 * 22 21 19 39 39 H 1.09001 * 113.74462 * 139.94568 * 22 21 19 40 40 H 1.08992 * 113.61788 * 254.53019 * 23 19 16 41 41 H 1.09002 * 113.61124 * 25.43736 * 23 19 16 42 42 H 1.08993 * 109.46313 * 58.27251 * 24 14 13 43 43 H 1.09000 * 109.46480 * 178.25361 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4647 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.8757 -0.6786 0.8898 11 6 4.0232 -0.4769 -1.2514 12 6 5.5532 -0.5339 -1.2731 13 6 6.0050 -1.9956 -1.2359 14 7 5.4909 -2.6371 -0.0191 15 6 6.0188 -4.0007 0.1203 16 6 5.4749 -4.8763 -1.0103 17 1 4.3859 -4.8301 -1.0138 18 8 5.9758 -4.4032 -2.2622 19 6 5.9233 -6.3233 -0.7957 20 8 5.5508 -6.8354 0.4854 21 6 7.3985 -6.5705 -1.1527 22 6 6.9431 -7.9085 -1.7631 23 6 5.5633 -7.2593 -1.9615 24 6 4.0226 -2.6366 0.0016 25 1 -0.4850 0.8400 -0.0004 26 1 3.6276 -0.9688 -2.1400 27 1 3.6967 0.5629 -1.2348 28 1 5.9495 -0.0082 -0.4044 29 1 5.9218 -0.0622 -2.1840 30 1 7.0941 -2.0392 -1.2371 31 1 5.6197 -2.5172 -2.1120 32 1 7.1074 -3.9759 0.0691 33 1 5.7097 -4.4137 1.0805 34 1 6.9403 -4.4162 -2.3302 35 1 5.8259 -7.7497 0.6387 36 1 7.7938 -5.8680 -1.8864 37 1 8.0453 -6.6840 -0.2827 38 1 6.9391 -8.7332 -1.0503 39 1 7.4464 -8.1588 -2.6970 40 1 4.7307 -7.9280 -1.7435 41 1 5.4559 -6.7453 -2.9168 42 1 3.6467 -3.1553 -0.8802 43 1 3.6718 -3.1456 0.8994 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930924655.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:01 Heat of formation + Delta-G solvation = -69.851983 kcal Electronic energy + Delta-G solvation = -22294.352601 eV Core-core repulsion = 19147.308434 eV Total energy + Delta-G solvation = -3147.044167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.65107 -38.52350 -36.26976 -34.49323 -33.49425 -32.05581 -30.20003 -28.89806 -26.20868 -25.25745 -24.78181 -22.94793 -21.37924 -21.00058 -19.83090 -18.72558 -17.47522 -16.78596 -16.57548 -15.70882 -15.50339 -14.98054 -14.84291 -14.24619 -13.95369 -13.66796 -13.38856 -13.23086 -12.90897 -12.65685 -12.52558 -12.26589 -12.04515 -11.67394 -11.27633 -11.23307 -11.17038 -11.07760 -10.95056 -10.82353 -10.33761 -10.10391 -9.95449 -9.87314 -9.81542 -9.48738 -9.01443 -8.83444 -8.43492 -7.49929 -5.99584 -3.97942 3.34851 3.45296 3.49841 3.78680 4.17018 4.20455 4.34748 4.40509 4.49815 4.51625 4.66892 5.14242 5.26590 5.31546 5.32740 5.38790 5.50026 5.55530 5.62978 5.68675 5.70660 5.75041 5.89123 6.03444 6.12110 6.12966 6.24513 6.30108 6.45235 6.47513 6.67574 6.73941 6.92118 6.96091 7.30985 7.36657 7.48707 7.57194 7.74268 7.75427 7.96613 8.60725 9.04090 9.63774 11.13818 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032683 B = 0.004937 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.510106 B = 5670.186920 C = 6064.754833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.511 4.511 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.033 0.967 11 C -0.120 4.120 12 C -0.121 4.121 13 C 0.048 3.952 14 N -0.536 5.536 15 C 0.035 3.965 16 C 0.090 3.910 17 H 0.114 0.886 18 O -0.541 6.541 19 C 0.087 3.913 20 O -0.532 6.532 21 C -0.173 4.173 22 C -0.145 4.145 23 C -0.167 4.167 24 C 0.074 3.926 25 H 0.262 0.738 26 H 0.056 0.944 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.366 0.634 35 H 0.376 0.624 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.030 0.970 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.948 -13.644 -3.598 22.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.208 1.208 5 H -0.227 1.227 6 H -0.188 1.188 7 C -0.550 4.550 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.051 0.949 11 C -0.158 4.158 12 C -0.159 4.159 13 C -0.080 4.080 14 N -0.259 5.259 15 C -0.094 4.094 16 C 0.029 3.971 17 H 0.132 0.868 18 O -0.348 6.348 19 C 0.044 3.956 20 O -0.337 6.337 21 C -0.210 4.210 22 C -0.183 4.183 23 C -0.205 4.205 24 C -0.053 4.053 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.215 0.785 35 H 0.223 0.777 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.049 0.951 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 16.063 -12.564 -3.238 20.649 hybrid contribution 0.926 -0.290 -0.702 1.198 sum 16.989 -12.854 -3.940 21.665 Atomic orbital electron populations 1.69905 1.06300 1.26829 1.51242 1.24980 0.94648 0.99018 0.94482 0.86818 0.80001 0.83469 0.77807 1.20770 1.22725 1.18849 1.21021 0.88885 0.94435 1.50636 0.91015 1.19155 0.95849 0.91280 0.93634 0.94857 1.21993 0.92770 0.99952 1.01085 1.21668 0.97988 0.95854 1.00342 1.22300 0.97890 0.95150 0.92619 1.62249 1.10447 1.15309 1.37879 1.22743 0.99259 0.88840 0.98607 1.22455 1.00791 0.89101 0.84735 0.86810 1.86730 1.26060 1.85890 1.36122 1.22954 0.93748 0.95123 0.83775 1.86524 1.81457 1.32860 1.32845 1.23722 0.97592 0.98136 1.01588 1.22871 0.97402 0.96609 1.01381 1.23697 0.97279 0.98940 1.00550 1.22104 0.83969 0.99545 0.99652 0.92785 0.92571 0.93807 0.92380 0.93089 0.92924 0.91630 0.91508 0.89286 0.78522 0.77664 0.89290 0.90577 0.90320 0.90983 0.90904 0.88317 0.95146 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 2 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16 3 Si 0.89 22.78 24.36 -169.99 -4.14 18.64 16 4 H -0.28 -7.01 6.89 56.52 0.39 -6.63 16 5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 6 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16 7 C -0.51 -14.74 9.14 -34.44 -0.31 -15.06 16 8 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16 9 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 10 H 0.03 0.86 7.19 -51.93 -0.37 0.49 16 11 C -0.12 -2.72 4.74 -26.60 -0.13 -2.85 16 12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16 13 C 0.05 0.79 4.61 -3.84 -0.02 0.78 16 14 N -0.54 -9.52 4.86 -234.68 -1.14 -10.66 16 15 C 0.03 0.49 5.01 -3.83 -0.02 0.47 16 16 C 0.09 1.19 2.59 -26.73 -0.07 1.12 16 17 H 0.11 1.85 6.23 -51.93 -0.32 1.53 16 18 O -0.54 -6.73 9.11 -35.23 -0.32 -7.05 16 19 C 0.09 0.90 1.35 -89.81 -0.12 0.78 16 20 O -0.53 -5.82 12.77 -35.23 -0.45 -6.27 16 21 C -0.17 -1.36 7.15 -25.83 -0.18 -1.55 16 22 C -0.15 -1.05 7.76 -25.82 -0.20 -1.25 16 23 C -0.17 -1.58 7.32 -25.92 -0.19 -1.77 16 24 C 0.07 1.56 4.06 -3.83 -0.02 1.55 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.04 1.04 3.37 -51.93 -0.17 0.87 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.74 8.06 -51.93 -0.42 0.33 16 31 H 0.07 1.11 5.54 -51.93 -0.29 0.82 16 32 H 0.07 0.83 8.02 -51.93 -0.42 0.41 16 33 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 34 H 0.37 3.30 6.88 45.56 0.31 3.61 16 35 H 0.38 2.60 8.33 45.56 0.38 2.98 16 36 H 0.09 0.63 6.03 -51.93 -0.31 0.32 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.47 7.80 -51.93 -0.40 0.06 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.02 7.53 -51.93 -0.39 0.63 16 42 H 0.03 0.66 6.49 -51.93 -0.34 0.32 16 43 H 0.06 1.39 8.12 -51.93 -0.42 0.97 16 LS Contribution 315.04 15.07 4.75 4.75 Total: -1.00 -32.26 315.04 -7.92 -40.17 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -5.70 Total: 5.85 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: -1.69 Total: -17.89 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: -0.37 Total: -38.20 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: -0.77 Total: -13.32 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.14 Total: 18.64 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.26 -7.92 -40.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930924655.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.679 kcal (2) G-P(sol) polarization free energy of solvation -32.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds