Wall clock time and date at job start Mon Mar 30 2020 01:41:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31516 * 1
3 3 Si 1.86806 * 119.99803 * 2 1
4 4 H 1.48501 * 109.46808 * 269.99563 * 3 2 1
5 5 H 1.48501 * 109.47297 * 29.99743 * 3 2 1
6 6 H 1.48498 * 109.46794 * 150.00060 * 3 2 1
7 7 C 1.37880 * 120.00192 * 179.97438 * 2 1 3
8 8 H 1.07993 * 119.99903 * 359.97438 * 7 2 1
9 9 C 1.50695 * 119.99933 * 180.02562 * 7 2 1
10 10 H 1.08999 * 109.53976 * 59.89733 * 9 7 2
11 11 C 1.53127 * 109.50186 * 299.79966 * 9 7 2
12 12 C 1.53123 * 109.15019 * 182.40207 * 11 9 7
13 13 C 1.53034 * 109.27992 * 57.67185 * 12 11 9
14 14 N 1.46847 * 109.51345 * 300.80438 * 13 12 11
15 15 C 1.46895 * 110.99982 * 185.84805 * 14 13 12
16 16 C 1.52999 * 109.47142 * 293.95107 * 15 14 13
17 17 H 1.09002 * 109.46885 * 305.00101 * 16 15 14
18 18 O 1.42902 * 109.47137 * 64.99670 * 16 15 14
19 19 C 1.52998 * 109.47477 * 184.99842 * 16 15 14
20 20 O 1.42904 * 112.84570 * 55.33464 * 19 16 15
21 21 C 1.53778 * 113.61519 * 284.13908 * 19 16 15
22 22 C 1.53960 * 87.01842 * 220.04585 * 21 19 16
23 23 C 1.53784 * 113.61676 * 186.52475 * 19 16 15
24 24 C 1.46843 * 111.20124 * 61.74903 * 14 13 12
25 25 H 0.96995 * 120.00116 * 0.02562 * 1 2 3
26 26 H 1.09003 * 109.52393 * 302.31016 * 11 9 7
27 27 H 1.08997 * 109.52177 * 62.44105 * 11 9 7
28 28 H 1.08997 * 109.51083 * 297.71779 * 12 11 9
29 29 H 1.08998 * 109.48980 * 177.60711 * 12 11 9
30 30 H 1.09002 * 109.46271 * 180.79158 * 13 12 11
31 31 H 1.08994 * 109.46242 * 60.81457 * 13 12 11
32 32 H 1.09006 * 109.47384 * 53.94736 * 15 14 13
33 33 H 1.09000 * 109.47655 * 173.95019 * 15 14 13
34 34 H 0.96705 * 113.99682 * 60.00910 * 18 16 15
35 35 H 0.96704 * 113.99989 * 179.97438 * 20 19 16
36 36 H 1.08997 * 113.61389 * 334.56485 * 21 19 16
37 37 H 1.09000 * 113.61508 * 105.46824 * 21 19 16
38 38 H 1.09002 * 113.53797 * 270.81211 * 22 21 19
39 39 H 1.09001 * 113.74462 * 139.94568 * 22 21 19
40 40 H 1.08992 * 113.61788 * 254.53019 * 23 19 16
41 41 H 1.09002 * 113.61124 * 25.43736 * 23 19 16
42 42 H 1.08993 * 109.46313 * 58.27251 * 24 14 13
43 43 H 1.09000 * 109.46480 * 178.25361 * 24 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4465 2.6528 0.7000
6 1 3.5467 1.4402 0.7000
7 6 2.0046 -1.1941 0.0005
8 1 1.4647 -2.1293 0.0014
9 6 3.5116 -1.1940 0.0011
10 1 3.8757 -0.6786 0.8898
11 6 4.0232 -0.4769 -1.2514
12 6 5.5532 -0.5339 -1.2731
13 6 6.0050 -1.9956 -1.2359
14 7 5.4909 -2.6371 -0.0191
15 6 6.0188 -4.0007 0.1203
16 6 5.4749 -4.8763 -1.0103
17 1 4.3859 -4.8301 -1.0138
18 8 5.9758 -4.4032 -2.2622
19 6 5.9233 -6.3233 -0.7957
20 8 5.5508 -6.8354 0.4854
21 6 7.3985 -6.5705 -1.1527
22 6 6.9431 -7.9085 -1.7631
23 6 5.5633 -7.2593 -1.9615
24 6 4.0226 -2.6366 0.0016
25 1 -0.4850 0.8400 -0.0004
26 1 3.6276 -0.9688 -2.1400
27 1 3.6967 0.5629 -1.2348
28 1 5.9495 -0.0082 -0.4044
29 1 5.9218 -0.0622 -2.1840
30 1 7.0941 -2.0392 -1.2371
31 1 5.6197 -2.5172 -2.1120
32 1 7.1074 -3.9759 0.0691
33 1 5.7097 -4.4137 1.0805
34 1 6.9403 -4.4162 -2.3302
35 1 5.8259 -7.7497 0.6387
36 1 7.7938 -5.8680 -1.8864
37 1 8.0453 -6.6840 -0.2827
38 1 6.9391 -8.7332 -1.0503
39 1 7.4464 -8.1588 -2.6970
40 1 4.7307 -7.9280 -1.7435
41 1 5.4559 -6.7453 -2.9168
42 1 3.6467 -3.1553 -0.8802
43 1 3.6718 -3.1456 0.8994
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000930924655.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:41:01
Heat of formation + Delta-G solvation = -69.851983 kcal
Electronic energy + Delta-G solvation = -22294.352601 eV
Core-core repulsion = 19147.308434 eV
Total energy + Delta-G solvation = -3147.044167 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.38 seconds
Orbital eigenvalues (eV)
-40.65107 -38.52350 -36.26976 -34.49323 -33.49425 -32.05581 -30.20003 -28.89806
-26.20868 -25.25745 -24.78181 -22.94793 -21.37924 -21.00058 -19.83090 -18.72558
-17.47522 -16.78596 -16.57548 -15.70882 -15.50339 -14.98054 -14.84291 -14.24619
-13.95369 -13.66796 -13.38856 -13.23086 -12.90897 -12.65685 -12.52558 -12.26589
-12.04515 -11.67394 -11.27633 -11.23307 -11.17038 -11.07760 -10.95056 -10.82353
-10.33761 -10.10391 -9.95449 -9.87314 -9.81542 -9.48738 -9.01443 -8.83444
-8.43492 -7.49929 -5.99584 -3.97942 3.34851 3.45296 3.49841 3.78680
4.17018 4.20455 4.34748 4.40509 4.49815 4.51625 4.66892 5.14242
5.26590 5.31546 5.32740 5.38790 5.50026 5.55530 5.62978 5.68675
5.70660 5.75041 5.89123 6.03444 6.12110 6.12966 6.24513 6.30108
6.45235 6.47513 6.67574 6.73941 6.92118 6.96091 7.30985 7.36657
7.48707 7.57194 7.74268 7.75427 7.96613 8.60725 9.04090 9.63774
11.13818
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.032683 B = 0.004937 C = 0.004616
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 856.510106 B = 5670.186920 C = 6064.754833
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.904 5.904
2 C 0.070 3.930
3 Si 0.888 3.112
4 H -0.281 1.281
5 H -0.299 1.299
6 H -0.264 1.264
7 C -0.511 4.511
8 H 0.072 0.928
9 C 0.020 3.980
10 H 0.033 0.967
11 C -0.120 4.120
12 C -0.121 4.121
13 C 0.048 3.952
14 N -0.536 5.536
15 C 0.035 3.965
16 C 0.090 3.910
17 H 0.114 0.886
18 O -0.541 6.541
19 C 0.087 3.913
20 O -0.532 6.532
21 C -0.173 4.173
22 C -0.145 4.145
23 C -0.167 4.167
24 C 0.074 3.926
25 H 0.262 0.738
26 H 0.056 0.944
27 H 0.044 0.956
28 H 0.057 0.943
29 H 0.050 0.950
30 H 0.052 0.948
31 H 0.066 0.934
32 H 0.066 0.934
33 H 0.089 0.911
34 H 0.366 0.634
35 H 0.376 0.624
36 H 0.089 0.911
37 H 0.076 0.924
38 H 0.078 0.922
39 H 0.071 0.929
40 H 0.072 0.928
41 H 0.098 0.902
42 H 0.030 0.970
43 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 16.948 -13.644 -3.598 22.053
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.131 4.131
3 Si 0.719 3.281
4 H -0.208 1.208
5 H -0.227 1.227
6 H -0.188 1.188
7 C -0.550 4.550
8 H 0.090 0.910
9 C 0.001 3.999
10 H 0.051 0.949
11 C -0.158 4.158
12 C -0.159 4.159
13 C -0.080 4.080
14 N -0.259 5.259
15 C -0.094 4.094
16 C 0.029 3.971
17 H 0.132 0.868
18 O -0.348 6.348
19 C 0.044 3.956
20 O -0.337 6.337
21 C -0.210 4.210
22 C -0.183 4.183
23 C -0.205 4.205
24 C -0.053 4.053
25 H 0.072 0.928
26 H 0.074 0.926
27 H 0.062 0.938
28 H 0.076 0.924
29 H 0.069 0.931
30 H 0.071 0.929
31 H 0.084 0.916
32 H 0.085 0.915
33 H 0.107 0.893
34 H 0.215 0.785
35 H 0.223 0.777
36 H 0.107 0.893
37 H 0.094 0.906
38 H 0.097 0.903
39 H 0.090 0.910
40 H 0.091 0.909
41 H 0.117 0.883
42 H 0.049 0.951
43 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 16.063 -12.564 -3.238 20.649
hybrid contribution 0.926 -0.290 -0.702 1.198
sum 16.989 -12.854 -3.940 21.665
Atomic orbital electron populations
1.69905 1.06300 1.26829 1.51242 1.24980 0.94648 0.99018 0.94482
0.86818 0.80001 0.83469 0.77807 1.20770 1.22725 1.18849 1.21021
0.88885 0.94435 1.50636 0.91015 1.19155 0.95849 0.91280 0.93634
0.94857 1.21993 0.92770 0.99952 1.01085 1.21668 0.97988 0.95854
1.00342 1.22300 0.97890 0.95150 0.92619 1.62249 1.10447 1.15309
1.37879 1.22743 0.99259 0.88840 0.98607 1.22455 1.00791 0.89101
0.84735 0.86810 1.86730 1.26060 1.85890 1.36122 1.22954 0.93748
0.95123 0.83775 1.86524 1.81457 1.32860 1.32845 1.23722 0.97592
0.98136 1.01588 1.22871 0.97402 0.96609 1.01381 1.23697 0.97279
0.98940 1.00550 1.22104 0.83969 0.99545 0.99652 0.92785 0.92571
0.93807 0.92380 0.93089 0.92924 0.91630 0.91508 0.89286 0.78522
0.77664 0.89290 0.90577 0.90320 0.90983 0.90904 0.88317 0.95146
0.91727
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16
2 C 0.07 2.07 5.45 -17.82 -0.10 1.97 16
3 Si 0.89 22.78 24.36 -169.99 -4.14 18.64 16
4 H -0.28 -7.01 6.89 56.52 0.39 -6.63 16
5 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16
6 H -0.26 -6.55 6.53 56.52 0.37 -6.18 16
7 C -0.51 -14.74 9.14 -34.44 -0.31 -15.06 16
8 H 0.07 2.22 7.99 -52.49 -0.42 1.81 16
9 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16
10 H 0.03 0.86 7.19 -51.93 -0.37 0.49 16
11 C -0.12 -2.72 4.74 -26.60 -0.13 -2.85 16
12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.40 16
13 C 0.05 0.79 4.61 -3.84 -0.02 0.78 16
14 N -0.54 -9.52 4.86 -234.68 -1.14 -10.66 16
15 C 0.03 0.49 5.01 -3.83 -0.02 0.47 16
16 C 0.09 1.19 2.59 -26.73 -0.07 1.12 16
17 H 0.11 1.85 6.23 -51.93 -0.32 1.53 16
18 O -0.54 -6.73 9.11 -35.23 -0.32 -7.05 16
19 C 0.09 0.90 1.35 -89.81 -0.12 0.78 16
20 O -0.53 -5.82 12.77 -35.23 -0.45 -6.27 16
21 C -0.17 -1.36 7.15 -25.83 -0.18 -1.55 16
22 C -0.15 -1.05 7.76 -25.82 -0.20 -1.25 16
23 C -0.17 -1.58 7.32 -25.92 -0.19 -1.77 16
24 C 0.07 1.56 4.06 -3.83 -0.02 1.55 16
25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16
26 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16
27 H 0.04 1.04 3.37 -51.93 -0.17 0.87 16
28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16
30 H 0.05 0.74 8.06 -51.93 -0.42 0.33 16
31 H 0.07 1.11 5.54 -51.93 -0.29 0.82 16
32 H 0.07 0.83 8.02 -51.93 -0.42 0.41 16
33 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16
34 H 0.37 3.30 6.88 45.56 0.31 3.61 16
35 H 0.38 2.60 8.33 45.56 0.38 2.98 16
36 H 0.09 0.63 6.03 -51.93 -0.31 0.32 16
37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16
38 H 0.08 0.47 7.80 -51.93 -0.40 0.06 16
39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16
40 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16
41 H 0.10 1.02 7.53 -51.93 -0.39 0.63 16
42 H 0.03 0.66 6.49 -51.93 -0.34 0.32 16
43 H 0.06 1.39 8.12 -51.93 -0.42 0.97 16
LS Contribution 315.04 15.07 4.75 4.75
Total: -1.00 -32.26 315.04 -7.92 -40.17
By element:
Atomic # 1 Polarization: 11.55 SS G_CDS: -5.70 Total: 5.85 kcal
Atomic # 6 Polarization: -16.20 SS G_CDS: -1.69 Total: -17.89 kcal
Atomic # 7 Polarization: -37.83 SS G_CDS: -0.37 Total: -38.20 kcal
Atomic # 8 Polarization: -12.55 SS G_CDS: -0.77 Total: -13.32 kcal
Atomic # 14 Polarization: 22.78 SS G_CDS: -4.14 Total: 18.64 kcal
Total LS contribution 4.75 Total: 4.75 kcal
Total: -32.26 -7.92 -40.17 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000930924655.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.679 kcal
(2) G-P(sol) polarization free energy of solvation -32.255 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.934 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.173 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.852 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds