Wall clock time and date at job start Mon Mar 30 2020 01:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00095 * 2 1 4 4 H 1.48497 * 109.47384 * 269.99975 * 3 2 1 5 5 H 1.48507 * 109.47272 * 30.00207 * 3 2 1 6 6 H 1.48501 * 109.47079 * 149.99878 * 3 2 1 7 7 C 1.37878 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00115 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00160 * 359.72614 * 7 2 1 10 10 H 1.09003 * 109.47052 * 300.27563 * 9 7 2 11 11 O 1.42904 * 109.47128 * 60.27311 * 9 7 2 12 12 C 1.52992 * 109.47573 * 180.27514 * 9 7 2 13 13 N 1.46903 * 109.47645 * 179.21699 * 12 9 7 14 14 C 1.46868 * 110.99518 * 294.95491 * 13 12 9 15 15 C 1.53019 * 109.59585 * 174.30155 * 14 13 12 16 16 C 1.53149 * 109.33160 * 59.03560 * 15 14 13 17 17 H 1.09003 * 109.53442 * 182.45209 * 16 15 14 18 18 O 1.42908 * 109.53365 * 62.29706 * 16 15 14 19 19 C 1.53079 * 109.08917 * 302.41357 * 16 15 14 20 20 H 1.09000 * 109.49635 * 297.78858 * 19 16 15 21 21 C 1.52963 * 109.59970 * 177.65892 * 19 16 15 22 22 C 1.53024 * 109.40300 * 180.02562 * 21 19 16 23 23 C 1.52985 * 109.51903 * 59.94507 * 22 21 19 24 24 C 1.53022 * 109.53484 * 300.14106 * 23 22 21 25 25 C 1.46809 * 111.00018 * 170.83301 * 13 12 9 26 26 H 1.09005 * 109.44101 * 65.93928 * 25 13 12 27 27 H 0.97001 * 120.00116 * 359.97438 * 1 2 3 28 28 H 0.96694 * 113.99993 * 60.00174 * 11 9 7 29 29 H 1.09007 * 109.46808 * 299.21474 * 12 9 7 30 30 H 1.08997 * 109.47206 * 59.20982 * 12 9 7 31 31 H 1.08999 * 109.45227 * 294.34111 * 14 13 12 32 32 H 1.08999 * 109.45631 * 54.29148 * 14 13 12 33 33 H 1.08996 * 109.50126 * 178.99405 * 15 14 13 34 34 H 1.08999 * 109.49650 * 299.08179 * 15 14 13 35 35 H 0.96701 * 113.99699 * 59.99619 * 18 16 15 36 36 H 1.09003 * 109.48583 * 300.05269 * 21 19 16 37 37 H 1.09000 * 109.48440 * 60.07781 * 21 19 16 38 38 H 1.09000 * 109.46369 * 179.97438 * 22 21 19 39 39 H 1.09000 * 109.45871 * 299.94624 * 22 21 19 40 40 H 1.08997 * 109.46337 * 60.15995 * 23 22 21 41 41 H 1.09002 * 109.46145 * 180.11920 * 23 22 21 42 42 H 1.09006 * 109.48110 * 179.91894 * 24 23 22 43 43 H 1.09000 * 109.47945 * 299.93708 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0074 10 1 0.6243 -2.5522 0.8976 11 8 0.4294 -2.5810 -1.1590 12 6 2.2451 -3.6621 0.0135 13 7 1.5107 -4.9341 0.0390 14 6 0.7596 -5.0830 1.2923 15 6 -0.1025 -6.3455 1.2271 16 6 0.7983 -7.5633 1.0007 17 1 0.1840 -8.4592 0.9103 18 8 1.6936 -7.7073 2.1052 19 6 1.6017 -7.3594 -0.2862 20 1 0.9195 -7.2868 -1.1333 21 6 2.5484 -8.5429 -0.4930 22 6 3.3495 -8.3342 -1.7800 23 6 4.1618 -7.0423 -1.6727 24 6 3.2151 -5.8587 -1.4618 25 6 2.4172 -6.0693 -0.1727 26 1 3.1041 -6.1473 0.6701 27 1 -0.4850 0.8400 0.0004 28 1 0.9215 -2.5400 -1.9904 29 1 2.8625 -3.6170 -0.8838 30 1 2.8810 -3.5918 0.8959 31 1 1.4569 -5.1623 2.1262 32 1 0.1184 -4.2134 1.4368 33 1 -0.6456 -6.4641 2.1646 34 1 -0.8117 -6.2597 0.4038 35 1 1.2515 -7.8341 2.9559 36 1 3.2314 -8.6144 0.3535 37 1 1.9689 -9.4627 -0.5712 38 1 4.0249 -9.1769 -1.9281 39 1 2.6658 -8.2639 -2.6259 40 1 4.8477 -7.1136 -0.8285 41 1 4.7304 -6.8935 -2.5907 42 1 3.7949 -4.9389 -1.3840 43 1 2.5301 -5.7862 -2.3065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931506449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:06 Heat of formation + Delta-G solvation = -114.912533 kcal Electronic energy + Delta-G solvation = -22448.108029 eV Core-core repulsion = 19299.109890 eV Total energy + Delta-G solvation = -3148.998140 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.06137 -36.61121 -36.38107 -34.52092 -32.12405 -31.98672 -29.98569 -29.61375 -27.68918 -24.94373 -23.58446 -22.72883 -21.69020 -19.94605 -19.60577 -19.46597 -16.95507 -16.67934 -15.62303 -15.03481 -14.95880 -14.58906 -14.43862 -14.20173 -13.75803 -13.59901 -13.43436 -13.18706 -12.89341 -12.43760 -12.14706 -11.79922 -11.67555 -11.30187 -11.10694 -11.01855 -10.94705 -10.90543 -10.82327 -10.75691 -10.47254 -10.39905 -10.12762 -10.00160 -9.58670 -9.41262 -8.85267 -8.51936 -8.01683 -7.48323 -5.96630 -4.14522 3.29559 3.36465 3.39215 4.26817 4.39630 4.50351 4.77076 4.83125 4.94326 5.15687 5.28319 5.29376 5.31133 5.45070 5.47127 5.66801 5.69626 5.71583 5.81167 5.86949 5.94953 6.01365 6.09566 6.14237 6.24180 6.26534 6.29311 6.33681 6.43098 6.47008 6.49525 6.53907 6.61236 6.78162 6.93367 7.67988 7.71075 7.78137 7.85234 7.96912 8.26416 8.89816 9.51201 9.67955 11.07478 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.005256 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.456632 B = 5326.051067 C = 5914.152430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.888 3.112 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.573 4.573 8 H 0.053 0.947 9 C 0.238 3.762 10 H 0.053 0.947 11 O -0.554 6.554 12 C 0.028 3.972 13 N -0.523 5.523 14 C 0.061 3.939 15 C -0.147 4.147 16 C 0.107 3.893 17 H 0.049 0.951 18 O -0.563 6.563 19 C -0.068 4.068 20 H 0.086 0.914 21 C -0.109 4.109 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.117 4.117 25 C 0.096 3.904 26 H 0.039 0.961 27 H 0.259 0.741 28 H 0.341 0.659 29 H 0.069 0.931 30 H 0.022 0.978 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.371 0.629 36 H 0.068 0.932 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.067 0.933 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.488 -16.745 0.145 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.611 4.611 8 H 0.072 0.928 9 C 0.179 3.821 10 H 0.070 0.930 11 O -0.355 6.355 12 C -0.099 4.099 13 N -0.247 5.247 14 C -0.067 4.067 15 C -0.185 4.185 16 C 0.049 3.951 17 H 0.067 0.933 18 O -0.368 6.368 19 C -0.086 4.086 20 H 0.104 0.896 21 C -0.147 4.147 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.155 4.155 25 C -0.013 4.013 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.184 0.816 29 H 0.087 0.913 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.217 0.783 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.940 -16.590 -0.242 16.851 hybrid contribution 1.078 1.002 0.824 1.686 sum 4.018 -15.589 0.582 16.109 Atomic orbital electron populations 1.70084 1.05892 1.26297 1.47256 1.25014 0.94662 0.99001 0.93918 0.86699 0.79961 0.83654 0.78196 1.20526 1.21156 1.19920 1.21678 0.93125 0.91719 1.54611 0.92832 1.19314 0.87795 0.88545 0.86397 0.92967 1.86551 1.37721 1.96324 1.14945 1.23126 0.97357 0.89799 0.99642 1.61964 1.26809 1.01639 1.34259 1.21940 0.96623 0.97606 0.90490 1.22280 0.98547 0.95569 1.02154 1.21890 0.90290 0.95862 0.87082 0.93309 1.86523 1.36727 1.95723 1.17853 1.21200 0.97050 0.94754 0.95646 0.89601 1.21489 0.98269 0.96992 0.97916 1.21542 0.98718 0.97375 0.97969 1.21522 0.97886 0.94827 1.01263 1.21710 0.97961 0.97755 0.98048 1.21463 0.92869 0.90364 0.96606 0.94283 0.93070 0.81567 0.91277 0.95963 0.95394 0.89889 0.91906 0.90197 0.78255 0.91366 0.92525 0.92468 0.92058 0.92361 0.92177 0.91466 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.64 12.84 55.43 0.71 -24.92 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 7 C -0.57 -15.89 8.76 -34.44 -0.30 -16.20 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.24 6.08 2.69 -27.89 -0.08 6.00 16 10 H 0.05 1.47 6.37 -51.93 -0.33 1.14 16 11 O -0.55 -14.55 12.62 -35.23 -0.44 -14.99 16 12 C 0.03 0.59 4.26 -3.83 -0.02 0.58 16 13 N -0.52 -9.70 4.39 -226.67 -0.99 -10.70 16 14 C 0.06 1.09 5.15 -3.83 -0.02 1.07 16 15 C -0.15 -2.07 5.79 -26.64 -0.15 -2.22 16 16 C 0.11 1.36 3.27 -26.61 -0.09 1.27 16 17 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 18 O -0.56 -7.07 11.42 -35.23 -0.40 -7.47 16 19 C -0.07 -0.92 1.97 -90.58 -0.18 -1.10 16 20 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 21 C -0.11 -1.27 5.05 -26.74 -0.13 -1.41 16 22 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 23 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 24 C -0.12 -1.71 4.83 -26.69 -0.13 -1.84 16 25 C 0.10 1.52 1.56 -67.71 -0.11 1.41 16 26 H 0.04 0.69 7.74 -51.93 -0.40 0.29 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.34 8.12 9.04 45.56 0.41 8.53 16 29 H 0.07 1.42 5.71 -51.92 -0.30 1.13 16 30 H 0.02 0.49 8.13 -51.93 -0.42 0.06 16 31 H 0.03 0.50 7.77 -51.93 -0.40 0.10 16 32 H 0.08 1.68 6.17 -51.93 -0.32 1.36 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.37 3.21 9.08 45.56 0.41 3.62 16 36 H 0.07 0.87 7.64 -51.93 -0.40 0.48 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.05 6.14 -51.93 -0.32 0.73 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -31.03 323.97 -8.72 -39.75 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.83 Total: 10.40 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -1.62 Total: -13.28 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: -0.28 Total: -35.62 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.85 Total: -22.46 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.03 -8.72 -39.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931506449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.163 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds