Wall clock time and date at job start Mon Mar 30 2020 01:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00095 * 2 1 4 4 H 1.48497 * 109.47384 * 269.99975 * 3 2 1 5 5 H 1.48507 * 109.47272 * 30.00207 * 3 2 1 6 6 H 1.48501 * 109.47079 * 149.99878 * 3 2 1 7 7 C 1.37878 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00115 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00160 * 359.72614 * 7 2 1 10 10 H 1.09003 * 109.47052 * 300.27563 * 9 7 2 11 11 O 1.42904 * 109.47128 * 60.27311 * 9 7 2 12 12 C 1.52992 * 109.47573 * 180.27514 * 9 7 2 13 13 N 1.46903 * 109.47645 * 179.21699 * 12 9 7 14 14 C 1.46868 * 110.99518 * 294.95491 * 13 12 9 15 15 C 1.53019 * 109.59585 * 174.30155 * 14 13 12 16 16 C 1.53149 * 109.33160 * 59.03560 * 15 14 13 17 17 H 1.09003 * 109.53442 * 182.45209 * 16 15 14 18 18 O 1.42908 * 109.53365 * 62.29706 * 16 15 14 19 19 C 1.53079 * 109.08917 * 302.41357 * 16 15 14 20 20 H 1.09000 * 109.49635 * 297.78858 * 19 16 15 21 21 C 1.52963 * 109.59970 * 177.65892 * 19 16 15 22 22 C 1.53024 * 109.40300 * 180.02562 * 21 19 16 23 23 C 1.52985 * 109.51903 * 59.94507 * 22 21 19 24 24 C 1.53022 * 109.53484 * 300.14106 * 23 22 21 25 25 C 1.46809 * 111.00018 * 170.83301 * 13 12 9 26 26 H 1.09005 * 109.44101 * 65.93928 * 25 13 12 27 27 H 0.97001 * 120.00116 * 359.97438 * 1 2 3 28 28 H 0.96694 * 113.99993 * 60.00174 * 11 9 7 29 29 H 1.09007 * 109.46808 * 299.21474 * 12 9 7 30 30 H 1.08997 * 109.47206 * 59.20982 * 12 9 7 31 31 H 1.08999 * 109.45227 * 294.34111 * 14 13 12 32 32 H 1.08999 * 109.45631 * 54.29148 * 14 13 12 33 33 H 1.08996 * 109.50126 * 178.99405 * 15 14 13 34 34 H 1.08999 * 109.49650 * 299.08179 * 15 14 13 35 35 H 0.96701 * 113.99699 * 59.99619 * 18 16 15 36 36 H 1.09003 * 109.48583 * 300.05269 * 21 19 16 37 37 H 1.09000 * 109.48440 * 60.07781 * 21 19 16 38 38 H 1.09000 * 109.46369 * 179.97438 * 22 21 19 39 39 H 1.09000 * 109.45871 * 299.94624 * 22 21 19 40 40 H 1.08997 * 109.46337 * 60.15995 * 23 22 21 41 41 H 1.09002 * 109.46145 * 180.11920 * 23 22 21 42 42 H 1.09006 * 109.48110 * 179.91894 * 24 23 22 43 43 H 1.09000 * 109.47945 * 299.93708 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0074 10 1 0.6243 -2.5522 0.8976 11 8 0.4294 -2.5810 -1.1590 12 6 2.2451 -3.6621 0.0135 13 7 1.5107 -4.9341 0.0390 14 6 0.7596 -5.0830 1.2923 15 6 -0.1025 -6.3455 1.2271 16 6 0.7983 -7.5633 1.0007 17 1 0.1840 -8.4592 0.9103 18 8 1.6936 -7.7073 2.1052 19 6 1.6017 -7.3594 -0.2862 20 1 0.9195 -7.2868 -1.1333 21 6 2.5484 -8.5429 -0.4930 22 6 3.3495 -8.3342 -1.7800 23 6 4.1618 -7.0423 -1.6727 24 6 3.2151 -5.8587 -1.4618 25 6 2.4172 -6.0693 -0.1727 26 1 3.1041 -6.1473 0.6701 27 1 -0.4850 0.8400 0.0004 28 1 0.9215 -2.5400 -1.9904 29 1 2.8625 -3.6170 -0.8838 30 1 2.8810 -3.5918 0.8959 31 1 1.4569 -5.1623 2.1262 32 1 0.1184 -4.2134 1.4368 33 1 -0.6456 -6.4641 2.1646 34 1 -0.8117 -6.2597 0.4038 35 1 1.2515 -7.8341 2.9559 36 1 3.2314 -8.6144 0.3535 37 1 1.9689 -9.4627 -0.5712 38 1 4.0249 -9.1769 -1.9281 39 1 2.6658 -8.2639 -2.6259 40 1 4.8477 -7.1136 -0.8285 41 1 4.7304 -6.8935 -2.5907 42 1 3.7949 -4.9389 -1.3840 43 1 2.5301 -5.7862 -2.3065 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931506449.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:06 Heat of formation + Delta-G solvation = -139.336917 kcal Electronic energy + Delta-G solvation = -22449.167150 eV Core-core repulsion = 19299.109890 eV Total energy + Delta-G solvation = -3150.057260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.26972 -38.18107 -37.51883 -36.15433 -34.22298 -33.26085 -31.11844 -30.99746 -29.39507 -26.74237 -24.90253 -23.96401 -23.11564 -21.45741 -20.74792 -20.67674 -19.03899 -17.73078 -16.95813 -16.64685 -16.52734 -16.10791 -16.00006 -15.65650 -15.14928 -14.98309 -14.77782 -14.61607 -14.14400 -13.80364 -13.63393 -13.21588 -12.96669 -12.83987 -12.82262 -12.71060 -12.39492 -12.27795 -12.09040 -11.99557 -11.95688 -11.91364 -11.40380 -11.18755 -11.00960 -10.73882 -10.55677 -10.53540 -10.05541 -9.04997 -8.13795 -6.39986 1.39313 1.39726 1.50714 2.37611 2.99622 3.12189 3.43647 3.70765 3.77734 3.86423 4.09873 4.23163 4.23963 4.29711 4.33406 4.35081 4.41727 4.51969 4.59951 4.65233 4.67163 4.70164 4.87842 4.91194 4.96731 4.99924 5.02617 5.15010 5.16889 5.29466 5.30918 5.33356 5.37465 5.41059 5.60145 5.64374 5.76434 6.03898 6.26298 6.41138 6.73631 6.94180 7.34179 7.62233 8.90686 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.026373 B = 0.005256 C = 0.004733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.456632 B = 5326.051067 C = 5914.152430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.590 4.590 8 H 0.055 0.945 9 C 0.241 3.759 10 H 0.018 0.982 11 O -0.567 6.567 12 C 0.047 3.953 13 N -0.529 5.529 14 C 0.062 3.938 15 C -0.141 4.141 16 C 0.113 3.887 17 H 0.079 0.921 18 O -0.576 6.576 19 C -0.069 4.069 20 H 0.083 0.917 21 C -0.102 4.102 22 C -0.116 4.116 23 C -0.112 4.112 24 C -0.116 4.116 25 C 0.098 3.902 26 H 0.021 0.979 27 H 0.261 0.739 28 H 0.351 0.649 29 H 0.076 0.924 30 H 0.009 0.991 31 H 0.022 0.978 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.389 0.611 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -18.397 -0.360 18.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.784 3.216 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.628 4.628 8 H 0.073 0.927 9 C 0.183 3.817 10 H 0.036 0.964 11 O -0.370 6.370 12 C -0.081 4.081 13 N -0.253 5.253 14 C -0.067 4.067 15 C -0.179 4.179 16 C 0.054 3.946 17 H 0.097 0.903 18 O -0.384 6.384 19 C -0.088 4.088 20 H 0.101 0.899 21 C -0.140 4.140 22 C -0.153 4.153 23 C -0.150 4.150 24 C -0.154 4.154 25 C -0.010 4.010 26 H 0.039 0.961 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.094 0.906 30 H 0.027 0.973 31 H 0.040 0.960 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.238 0.762 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.812 -18.264 -0.738 18.672 hybrid contribution 0.788 1.505 1.013 1.978 sum 4.600 -16.758 0.274 17.380 Atomic orbital electron populations 1.70223 1.07640 1.27347 1.48380 1.25881 0.95482 1.02830 0.93307 0.85559 0.78634 0.78811 0.78560 1.19587 1.20739 1.19145 1.22048 0.93394 0.92967 1.54403 0.92650 1.19126 0.87665 0.89899 0.85003 0.96446 1.86493 1.38493 1.96454 1.15593 1.22726 0.96016 0.90071 0.99302 1.61959 1.27158 1.01454 1.34689 1.21907 0.96399 0.98350 0.90006 1.22262 0.98138 0.94302 1.03177 1.21850 0.90000 0.95938 0.86776 0.90328 1.86491 1.37360 1.95684 1.18873 1.21237 0.97227 0.94028 0.96291 0.89873 1.21440 0.97870 0.96715 0.97926 1.21546 0.98909 0.97190 0.97675 1.21498 0.97424 0.94286 1.01833 1.21695 0.98078 0.98483 0.97108 1.21533 0.92584 0.90447 0.96449 0.96133 0.92964 0.80478 0.90614 0.97263 0.96011 0.93467 0.89568 0.90946 0.76232 0.92366 0.90482 0.90410 0.91553 0.92667 0.90751 0.93160 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.83 12.84 21.45 0.28 -54.56 16 2 C 0.03 1.57 5.40 84.65 0.46 2.03 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.59 -33.49 8.76 25.60 0.22 -33.26 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.24 12.86 2.69 29.85 0.08 12.94 16 10 H 0.02 1.06 6.37 -2.39 -0.02 1.05 16 11 O -0.57 -30.80 12.62 -148.98 -1.88 -32.68 16 12 C 0.05 2.06 4.26 86.30 0.37 2.43 16 13 N -0.53 -20.13 4.39 -871.05 -3.82 -23.96 16 14 C 0.06 2.26 5.15 86.32 0.44 2.70 16 15 C -0.14 -3.82 5.79 30.65 0.18 -3.65 16 16 C 0.11 2.60 3.27 30.67 0.10 2.70 16 17 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 18 O -0.58 -13.26 11.42 -148.98 -1.70 -14.96 16 19 C -0.07 -1.75 1.97 -10.76 -0.02 -1.77 16 20 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 21 C -0.10 -2.09 5.05 30.59 0.15 -1.93 16 22 C -0.12 -2.17 5.92 30.60 0.18 -1.99 16 23 C -0.11 -2.49 5.92 30.60 0.18 -2.31 16 24 C -0.12 -3.33 4.83 30.62 0.15 -3.18 16 25 C 0.10 3.09 1.56 44.97 0.07 3.16 16 26 H 0.02 0.73 7.74 -2.38 -0.02 0.71 16 27 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 28 H 0.35 17.13 9.04 -74.06 -0.67 16.46 16 29 H 0.08 3.21 5.71 -2.38 -0.01 3.19 16 30 H 0.01 0.42 8.13 -2.39 -0.02 0.40 16 31 H 0.02 0.81 7.77 -2.39 -0.02 0.79 16 32 H 0.05 2.04 6.17 -2.39 -0.01 2.03 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.39 5.79 9.08 -74.06 -0.67 5.12 16 36 H 0.06 1.34 7.64 -2.39 -0.02 1.32 16 37 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.05 1.58 6.14 -2.38 -0.01 1.57 16 43 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -68.00 323.97 -2.88 -70.88 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.34 Total: 31.23 kcal Atomic # 6 Polarization: -24.69 SS G_CDS: 2.57 Total: -22.13 kcal Atomic # 7 Polarization: -74.97 SS G_CDS: -3.55 Total: -78.52 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -3.58 Total: -47.64 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -68.00 -2.88 -70.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931506449.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.457 kcal (2) G-P(sol) polarization free energy of solvation -68.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds