Wall clock time and date at job start Mon Mar 30 2020 01:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99544 * 2 1 4 4 H 1.48495 * 109.46901 * 239.99550 * 3 2 1 5 5 H 1.48496 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46695 * 120.00171 * 3 2 1 7 7 C 1.37870 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99926 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00460 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47062 * 300.00068 * 9 7 2 11 11 O 1.42892 * 109.47226 * 59.99950 * 9 7 2 12 12 C 1.53001 * 109.47325 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.46984 * 173.10356 * 12 9 7 14 14 C 1.46869 * 111.00179 * 73.26948 * 13 12 9 15 15 C 1.53035 * 109.65799 * 185.66277 * 14 13 12 16 16 C 1.53137 * 109.32289 * 301.06824 * 15 14 13 17 17 H 1.09001 * 109.53855 * 297.55348 * 16 15 14 18 18 O 1.42896 * 109.53513 * 177.39754 * 16 15 14 19 19 C 1.53077 * 109.15805 * 57.47442 * 16 15 14 20 20 H 1.09004 * 109.49558 * 62.17005 * 19 16 15 21 21 C 1.52968 * 109.60572 * 182.38595 * 19 16 15 22 22 C 1.53025 * 109.39565 * 179.97438 * 21 19 16 23 23 C 1.52990 * 109.52167 * 300.05397 * 22 21 19 24 24 C 1.53021 * 109.53856 * 59.85216 * 23 22 21 25 25 C 1.46814 * 110.99951 * 197.39855 * 13 12 9 26 26 H 1.09007 * 109.35819 * 294.02572 * 25 13 12 27 27 H 0.96996 * 120.00609 * 0.02562 * 1 2 3 28 28 H 0.96703 * 114.00346 * 60.00132 * 11 9 7 29 29 H 1.08999 * 109.46698 * 53.10125 * 12 9 7 30 30 H 1.08996 * 109.47247 * 293.10774 * 12 9 7 31 31 H 1.08995 * 109.44734 * 305.74284 * 14 13 12 32 32 H 1.09002 * 109.44684 * 65.69149 * 14 13 12 33 33 H 1.08993 * 109.55749 * 181.07380 * 15 14 13 34 34 H 1.08998 * 109.43148 * 60.98478 * 15 14 13 35 35 H 0.96706 * 114.00163 * 60.15531 * 18 16 15 36 36 H 1.09003 * 109.48125 * 299.92800 * 21 19 16 37 37 H 1.08997 * 109.48496 * 59.97379 * 21 19 16 38 38 H 1.09000 * 109.46123 * 180.02562 * 22 21 19 39 39 H 1.09000 * 109.46505 * 60.07372 * 22 21 19 40 40 H 1.08993 * 109.46453 * 299.83270 * 23 22 21 41 41 H 1.09000 * 109.44357 * 179.86212 * 23 22 21 42 42 H 1.09004 * 109.48387 * 180.08664 * 24 23 22 43 43 H 1.09005 * 109.49333 * 60.06126 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6241 -2.5575 0.8880 11 8 0.4300 -2.5742 -1.1688 12 6 2.2453 -3.6621 -0.0015 13 7 1.5183 -4.9278 0.1637 14 6 0.7979 -5.2852 -1.0652 15 6 -0.0588 -6.5287 -0.8165 16 6 0.8424 -7.6846 -0.3731 17 1 1.5457 -7.9252 -1.1704 18 8 0.0406 -8.8309 -0.0813 19 6 1.6143 -7.2672 0.8812 20 1 0.9119 -7.0626 1.6893 21 6 2.5622 -8.3927 1.2989 22 6 3.3315 -7.9702 2.5525 23 6 4.1392 -6.7055 2.2546 24 6 3.1916 -5.5806 1.8325 25 6 2.4254 -6.0053 0.5780 26 1 3.1315 -6.2124 -0.2262 27 1 -0.4851 0.8400 -0.0004 28 1 0.9224 -2.5282 -1.9998 29 1 2.9497 -3.5376 0.8210 30 1 2.7887 -3.6757 -0.9462 31 1 0.1564 -4.4562 -1.3640 32 1 1.5153 -5.4934 -1.8590 33 1 -0.5779 -6.8037 -1.7346 34 1 -0.7885 -6.3160 -0.0353 35 1 -0.4786 -9.1492 -0.8324 36 1 1.9858 -9.2929 1.5126 37 1 3.2655 -8.5943 0.4910 38 1 4.0077 -8.7714 2.8508 39 1 2.6277 -7.7698 3.3603 40 1 4.8453 -6.9068 1.4491 41 1 4.6847 -6.4043 3.1489 42 1 3.7681 -4.6805 1.6190 43 1 2.4861 -5.3778 2.6383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931506451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:11 Heat of formation + Delta-G solvation = -115.117071 kcal Electronic energy + Delta-G solvation = -22304.028157 eV Core-core repulsion = 19155.021148 eV Total energy + Delta-G solvation = -3149.007009 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.03794 -36.81801 -36.47226 -34.65552 -32.17922 -32.12106 -29.99650 -29.55304 -27.81440 -24.77959 -23.53865 -22.60439 -21.69603 -19.99200 -19.77642 -19.64807 -17.06517 -16.96627 -15.71090 -15.04070 -14.80188 -14.56950 -14.36332 -14.31796 -14.00895 -13.55137 -13.37441 -13.27433 -12.96217 -12.49698 -12.13542 -11.81738 -11.70097 -11.37050 -11.29537 -11.00562 -10.94799 -10.84269 -10.82537 -10.78778 -10.55963 -10.42520 -10.13310 -9.95141 -9.58633 -9.55068 -9.00335 -8.55247 -8.11770 -7.53434 -5.99264 -4.17743 3.29044 3.34698 3.36099 4.20943 4.30899 4.45890 4.74504 4.89200 4.94923 5.16400 5.22742 5.27713 5.39012 5.41869 5.43395 5.59282 5.62301 5.67060 5.79803 5.83223 5.89936 6.02552 6.07620 6.11446 6.20414 6.23845 6.25648 6.30925 6.37464 6.39575 6.50333 6.50742 6.69461 6.75329 7.00668 7.57805 7.68366 7.77695 7.77964 8.00072 8.22743 8.85594 9.37185 9.58909 11.04701 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025613 B = 0.005223 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.936117 B = 5359.207211 C = 6229.276151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.888 3.112 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.573 4.573 8 H 0.053 0.947 9 C 0.238 3.762 10 H 0.064 0.936 11 O -0.559 6.559 12 C 0.027 3.973 13 N -0.527 5.527 14 C 0.042 3.958 15 C -0.146 4.146 16 C 0.108 3.892 17 H 0.045 0.955 18 O -0.568 6.568 19 C -0.067 4.067 20 H 0.084 0.916 21 C -0.108 4.108 22 C -0.119 4.119 23 C -0.118 4.118 24 C -0.116 4.116 25 C 0.092 3.908 26 H 0.029 0.971 27 H 0.261 0.739 28 H 0.340 0.660 29 H 0.076 0.924 30 H 0.019 0.981 31 H 0.121 0.879 32 H 0.016 0.984 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.373 0.627 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.548 -15.646 -0.073 16.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.612 4.612 8 H 0.071 0.929 9 C 0.180 3.820 10 H 0.082 0.918 11 O -0.362 6.362 12 C -0.100 4.100 13 N -0.251 5.251 14 C -0.085 4.085 15 C -0.185 4.185 16 C 0.049 3.951 17 H 0.063 0.937 18 O -0.373 6.373 19 C -0.086 4.086 20 H 0.102 0.898 21 C -0.146 4.146 22 C -0.156 4.156 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.017 4.017 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.184 0.816 29 H 0.094 0.906 30 H 0.037 0.963 31 H 0.139 0.861 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.219 0.781 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.822 -15.427 1.356 15.951 hybrid contribution 1.390 0.844 -1.659 2.323 sum 5.212 -14.583 -0.304 15.489 Atomic orbital electron populations 1.70069 1.05889 1.26494 1.46890 1.25013 0.94665 0.99014 0.93852 0.86750 0.79728 0.83311 0.78642 1.20254 1.21209 1.20158 1.21590 0.93052 0.91593 1.54920 0.92851 1.19384 0.88078 0.88541 0.85996 0.91788 1.86527 1.38971 1.95225 1.15438 1.23178 0.97701 0.89902 0.99226 1.62004 1.28001 1.02388 1.32752 1.22513 0.97299 0.98788 0.89918 1.22312 0.99180 0.95459 1.01501 1.21936 0.91602 0.84850 0.96702 0.93693 1.86495 1.62536 1.47136 1.41109 1.21118 0.96534 0.93876 0.97088 0.89796 1.21504 0.97649 0.98111 0.97364 1.21548 0.98830 0.97242 0.98022 1.21540 0.97845 0.95272 1.00901 1.21702 0.98177 0.97879 0.97638 1.21545 0.92758 0.91085 0.96338 0.95262 0.92953 0.81635 0.90583 0.96252 0.86128 0.96616 0.92006 0.90365 0.78114 0.91337 0.92692 0.92401 0.91875 0.92421 0.91986 0.91053 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.22 12.84 55.43 0.71 -24.51 16 2 C 0.08 2.24 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.57 -15.52 8.76 -34.44 -0.30 -15.82 16 8 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 9 C 0.24 5.92 3.02 -27.88 -0.08 5.83 16 10 H 0.06 1.82 8.14 -51.93 -0.42 1.39 16 11 O -0.56 -13.79 9.69 -35.23 -0.34 -14.13 16 12 C 0.03 0.55 4.54 -3.83 -0.02 0.53 16 13 N -0.53 -9.57 4.45 -226.70 -1.01 -10.58 16 14 C 0.04 0.72 5.17 -3.82 -0.02 0.70 16 15 C -0.15 -2.12 5.72 -26.64 -0.15 -2.27 16 16 C 0.11 1.44 2.95 -26.62 -0.08 1.36 16 17 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 18 O -0.57 -7.05 12.77 -35.23 -0.45 -7.50 16 19 C -0.07 -0.95 1.87 -90.58 -0.17 -1.12 16 20 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 21 C -0.11 -1.32 5.09 -26.73 -0.14 -1.45 16 22 C -0.12 -1.33 5.92 -26.72 -0.16 -1.49 16 23 C -0.12 -1.38 5.92 -26.73 -0.16 -1.54 16 24 C -0.12 -1.68 4.88 -26.72 -0.13 -1.81 16 25 C 0.09 1.41 1.69 -67.74 -0.11 1.30 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.34 7.52 9.04 45.56 0.41 7.93 16 29 H 0.08 1.53 5.35 -51.93 -0.28 1.25 16 30 H 0.02 0.39 8.03 -51.93 -0.42 -0.03 16 31 H 0.12 2.33 5.09 -51.93 -0.26 2.07 16 32 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.37 3.06 9.09 45.56 0.41 3.48 16 36 H 0.07 0.84 7.77 -51.93 -0.40 0.44 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.07 1.09 5.98 -51.93 -0.31 0.78 16 43 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 323.78 15.07 4.88 4.88 Total: -1.00 -29.95 323.78 -8.73 -38.68 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.88 Total: 10.77 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -1.62 Total: -13.62 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.30 Total: -35.09 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.79 Total: -21.63 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.95 -8.73 -38.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931506451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.435 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds