Wall clock time and date at job start Mon Mar 30 2020 01:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99544 * 2 1 4 4 H 1.48495 * 109.46901 * 239.99550 * 3 2 1 5 5 H 1.48496 * 109.47261 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46695 * 120.00171 * 3 2 1 7 7 C 1.37870 * 119.99852 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99926 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00460 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47062 * 300.00068 * 9 7 2 11 11 O 1.42892 * 109.47226 * 59.99950 * 9 7 2 12 12 C 1.53001 * 109.47325 * 180.02562 * 9 7 2 13 13 N 1.46895 * 109.46984 * 173.10356 * 12 9 7 14 14 C 1.46869 * 111.00179 * 73.26948 * 13 12 9 15 15 C 1.53035 * 109.65799 * 185.66277 * 14 13 12 16 16 C 1.53137 * 109.32289 * 301.06824 * 15 14 13 17 17 H 1.09001 * 109.53855 * 297.55348 * 16 15 14 18 18 O 1.42896 * 109.53513 * 177.39754 * 16 15 14 19 19 C 1.53077 * 109.15805 * 57.47442 * 16 15 14 20 20 H 1.09004 * 109.49558 * 62.17005 * 19 16 15 21 21 C 1.52968 * 109.60572 * 182.38595 * 19 16 15 22 22 C 1.53025 * 109.39565 * 179.97438 * 21 19 16 23 23 C 1.52990 * 109.52167 * 300.05397 * 22 21 19 24 24 C 1.53021 * 109.53856 * 59.85216 * 23 22 21 25 25 C 1.46814 * 110.99951 * 197.39855 * 13 12 9 26 26 H 1.09007 * 109.35819 * 294.02572 * 25 13 12 27 27 H 0.96996 * 120.00609 * 0.02562 * 1 2 3 28 28 H 0.96703 * 114.00346 * 60.00132 * 11 9 7 29 29 H 1.08999 * 109.46698 * 53.10125 * 12 9 7 30 30 H 1.08996 * 109.47247 * 293.10774 * 12 9 7 31 31 H 1.08995 * 109.44734 * 305.74284 * 14 13 12 32 32 H 1.09002 * 109.44684 * 65.69149 * 14 13 12 33 33 H 1.08993 * 109.55749 * 181.07380 * 15 14 13 34 34 H 1.08998 * 109.43148 * 60.98478 * 15 14 13 35 35 H 0.96706 * 114.00163 * 60.15531 * 18 16 15 36 36 H 1.09003 * 109.48125 * 299.92800 * 21 19 16 37 37 H 1.08997 * 109.48496 * 59.97379 * 21 19 16 38 38 H 1.09000 * 109.46123 * 180.02562 * 22 21 19 39 39 H 1.09000 * 109.46505 * 60.07372 * 22 21 19 40 40 H 1.08993 * 109.46453 * 299.83270 * 23 22 21 41 41 H 1.09000 * 109.44357 * 179.86212 * 23 22 21 42 42 H 1.09004 * 109.48387 * 180.08664 * 24 23 22 43 43 H 1.09005 * 109.49333 * 60.06126 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6241 -2.5575 0.8880 11 8 0.4300 -2.5742 -1.1688 12 6 2.2453 -3.6621 -0.0015 13 7 1.5183 -4.9278 0.1637 14 6 0.7979 -5.2852 -1.0652 15 6 -0.0588 -6.5287 -0.8165 16 6 0.8424 -7.6846 -0.3731 17 1 1.5457 -7.9252 -1.1704 18 8 0.0406 -8.8309 -0.0813 19 6 1.6143 -7.2672 0.8812 20 1 0.9119 -7.0626 1.6893 21 6 2.5622 -8.3927 1.2989 22 6 3.3315 -7.9702 2.5525 23 6 4.1392 -6.7055 2.2546 24 6 3.1916 -5.5806 1.8325 25 6 2.4254 -6.0053 0.5780 26 1 3.1315 -6.2124 -0.2262 27 1 -0.4851 0.8400 -0.0004 28 1 0.9224 -2.5282 -1.9998 29 1 2.9497 -3.5376 0.8210 30 1 2.7887 -3.6757 -0.9462 31 1 0.1564 -4.4562 -1.3640 32 1 1.5153 -5.4934 -1.8590 33 1 -0.5779 -6.8037 -1.7346 34 1 -0.7885 -6.3160 -0.0353 35 1 -0.4786 -9.1492 -0.8324 36 1 1.9858 -9.2929 1.5126 37 1 3.2655 -8.5943 0.4910 38 1 4.0077 -8.7714 2.8508 39 1 2.6277 -7.7698 3.3603 40 1 4.8453 -6.9068 1.4491 41 1 4.6847 -6.4043 3.1489 42 1 3.7681 -4.6805 1.6190 43 1 2.4861 -5.3778 2.6383 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931506451.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:10 Heat of formation + Delta-G solvation = -138.202967 kcal Electronic energy + Delta-G solvation = -22305.029237 eV Core-core repulsion = 19155.021148 eV Total energy + Delta-G solvation = -3150.008089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.25168 -38.33880 -37.60070 -36.19741 -34.23846 -33.40891 -31.15061 -30.87064 -29.48680 -26.57968 -24.72645 -23.77452 -23.22698 -21.57076 -20.87441 -20.80371 -19.00590 -18.06626 -17.00329 -16.62839 -16.46590 -16.39628 -15.79909 -15.39820 -15.31103 -14.90950 -14.71135 -14.60559 -14.33264 -13.78812 -13.52468 -13.27620 -13.07262 -12.93729 -12.78174 -12.64563 -12.40034 -12.33144 -12.11730 -12.00590 -11.92839 -11.89323 -11.43765 -11.08046 -11.04223 -10.74850 -10.71360 -10.66321 -9.92899 -9.04232 -8.11395 -6.37676 1.41301 1.42859 1.50975 2.39213 3.00038 3.13993 3.27289 3.64816 3.80057 3.87146 4.10203 4.17304 4.22422 4.29333 4.32432 4.33583 4.39248 4.47287 4.53834 4.61785 4.64213 4.70921 4.83077 4.87275 4.98849 5.01226 5.11638 5.15706 5.24811 5.27091 5.29710 5.35265 5.39081 5.43054 5.57214 5.64493 5.77559 6.05203 6.33756 6.41679 6.75733 6.90967 7.34518 7.55308 8.92536 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025613 B = 0.005223 C = 0.004494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.936117 B = 5359.207211 C = 6229.276151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.587 4.587 8 H 0.059 0.941 9 C 0.241 3.759 10 H 0.018 0.982 11 O -0.569 6.569 12 C 0.046 3.954 13 N -0.544 5.544 14 C 0.043 3.957 15 C -0.140 4.140 16 C 0.116 3.884 17 H 0.060 0.940 18 O -0.575 6.575 19 C -0.067 4.067 20 H 0.059 0.941 21 C -0.101 4.101 22 C -0.117 4.117 23 C -0.111 4.111 24 C -0.116 4.116 25 C 0.094 3.906 26 H 0.035 0.965 27 H 0.261 0.739 28 H 0.351 0.649 29 H 0.077 0.923 30 H 0.024 0.976 31 H 0.093 0.907 32 H 0.027 0.973 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.392 0.608 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.319 -17.042 -0.562 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.175 4.175 3 Si 0.783 3.217 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.625 4.625 8 H 0.077 0.923 9 C 0.184 3.816 10 H 0.036 0.964 11 O -0.373 6.373 12 C -0.082 4.082 13 N -0.268 5.268 14 C -0.084 4.084 15 C -0.178 4.178 16 C 0.057 3.943 17 H 0.078 0.922 18 O -0.383 6.383 19 C -0.086 4.086 20 H 0.077 0.923 21 C -0.139 4.139 22 C -0.154 4.154 23 C -0.149 4.149 24 C -0.154 4.154 25 C -0.014 4.014 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.196 0.804 29 H 0.095 0.905 30 H 0.042 0.958 31 H 0.111 0.889 32 H 0.045 0.955 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.597 -16.850 0.854 17.776 hybrid contribution 0.769 1.231 -1.512 2.096 sum 6.366 -15.619 -0.658 16.879 Atomic orbital electron populations 1.70218 1.07674 1.27354 1.48386 1.25877 0.95430 1.02823 0.93381 0.85628 0.78359 0.78576 0.79092 1.19163 1.21118 1.19383 1.21996 0.93484 0.92726 1.54269 0.92291 1.19137 0.87822 0.90106 0.84564 0.96384 1.86487 1.39432 1.95467 1.15898 1.22760 0.96303 0.89680 0.99414 1.61915 1.28764 1.02542 1.33621 1.22409 0.97282 0.98950 0.89761 1.22263 0.98636 0.94949 1.01982 1.21779 0.91515 0.84603 0.96429 0.92243 1.86459 1.62812 1.46404 1.42625 1.21086 0.96569 0.94052 0.96865 0.92265 1.21456 0.97363 0.97032 0.98083 1.21547 0.98932 0.97559 0.97381 1.21506 0.97330 0.94325 1.01732 1.21694 0.98206 0.98767 0.96750 1.21602 0.92553 0.90617 0.96656 0.94726 0.93051 0.80427 0.90491 0.95828 0.88881 0.95507 0.89531 0.92686 0.75832 0.91180 0.91624 0.90121 0.92566 0.91417 0.90775 0.92187 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.21 12.84 21.45 0.28 -53.93 16 2 C 0.03 1.53 5.40 84.65 0.46 1.99 16 3 Si 0.96 43.32 29.54 68.60 2.03 45.35 16 4 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 7 C -0.59 -32.23 8.76 25.60 0.22 -32.00 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.24 12.47 3.02 29.85 0.09 12.56 16 10 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 11 O -0.57 -29.02 9.69 -148.98 -1.44 -30.47 16 12 C 0.05 1.91 4.54 86.30 0.39 2.30 16 13 N -0.54 -20.01 4.45 -871.13 -3.87 -23.89 16 14 C 0.04 1.47 5.17 86.32 0.45 1.92 16 15 C -0.14 -3.94 5.72 30.65 0.18 -3.77 16 16 C 0.12 2.86 2.95 30.67 0.09 2.95 16 17 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 18 O -0.58 -12.93 12.77 -148.98 -1.90 -14.84 16 19 C -0.07 -1.81 1.87 -10.77 -0.02 -1.83 16 20 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 21 C -0.10 -2.21 5.09 30.59 0.16 -2.05 16 22 C -0.12 -2.32 5.92 30.60 0.18 -2.14 16 23 C -0.11 -2.36 5.92 30.60 0.18 -2.18 16 24 C -0.12 -3.31 4.88 30.60 0.15 -3.16 16 25 C 0.09 2.82 1.69 44.95 0.08 2.89 16 26 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 27 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 28 H 0.35 15.88 9.04 -74.06 -0.67 15.21 16 29 H 0.08 3.14 5.35 -2.39 -0.01 3.13 16 30 H 0.02 0.95 8.03 -2.39 -0.02 0.93 16 31 H 0.09 3.69 5.09 -2.39 -0.01 3.68 16 32 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.39 5.34 9.09 -74.05 -0.67 4.66 16 36 H 0.07 1.53 7.77 -2.39 -0.02 1.52 16 37 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 1.82 5.98 -2.38 -0.01 1.81 16 43 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -65.38 323.78 -2.66 -68.04 By element: Atomic # 1 Polarization: 32.59 SS G_CDS: -0.34 Total: 32.24 kcal Atomic # 6 Polarization: -25.12 SS G_CDS: 2.60 Total: -22.52 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: -3.60 Total: -77.82 kcal Atomic # 8 Polarization: -41.96 SS G_CDS: -3.35 Total: -45.30 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -65.38 -2.66 -68.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931506451.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.163 kcal (2) G-P(sol) polarization free energy of solvation -65.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds