Wall clock time and date at job start Mon Mar 30 2020 01:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00016 * 2 1 4 4 H 1.48503 * 109.47299 * 240.00588 * 3 2 1 5 5 H 1.48501 * 109.46959 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47111 * 120.00594 * 3 2 1 7 7 C 1.37872 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00095 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00112 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47378 * 300.00497 * 9 7 2 11 11 O 1.42903 * 109.47052 * 60.00034 * 9 7 2 12 12 C 1.52993 * 109.47604 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.47350 * 180.02562 * 12 9 7 14 14 C 1.46845 * 110.99856 * 294.20501 * 13 12 9 15 15 C 1.53037 * 109.55232 * 174.25156 * 14 13 12 16 16 C 1.53130 * 109.29270 * 59.11887 * 15 14 13 17 17 H 1.08992 * 109.53157 * 182.41089 * 16 15 14 18 18 O 1.42904 * 109.52960 * 62.26509 * 16 15 14 19 19 C 1.53155 * 109.11129 * 302.30858 * 16 15 14 20 20 H 1.09004 * 109.54206 * 177.76289 * 19 16 15 21 21 C 1.53015 * 109.31610 * 298.06261 * 19 16 15 22 22 C 1.52991 * 109.50050 * 179.50854 * 21 19 16 23 23 C 1.52999 * 109.46659 * 299.95536 * 22 21 19 24 24 C 1.52748 * 109.37522 * 60.03872 * 23 22 21 25 25 C 1.46837 * 110.99865 * 170.01510 * 13 12 9 26 26 H 1.09002 * 109.43879 * 65.91031 * 25 13 12 27 27 H 0.97002 * 120.00052 * 359.97438 * 1 2 3 28 28 H 0.96710 * 113.99941 * 60.00169 * 11 9 7 29 29 H 1.09007 * 109.46934 * 59.99939 * 12 9 7 30 30 H 1.09000 * 109.47155 * 300.00629 * 12 9 7 31 31 H 1.08995 * 109.45803 * 54.23140 * 14 13 12 32 32 H 1.08995 * 109.44642 * 294.26801 * 14 13 12 33 33 H 1.09001 * 109.50429 * 299.17649 * 15 14 13 34 34 H 1.08999 * 109.50351 * 179.06044 * 15 14 13 35 35 H 0.96700 * 113.99553 * 60.14987 * 18 16 15 36 36 H 1.09005 * 109.47136 * 299.51876 * 21 19 16 37 37 H 1.09004 * 109.46716 * 59.49994 * 21 19 16 38 38 H 1.08999 * 109.47307 * 59.95577 * 22 21 19 39 39 H 1.09002 * 109.47023 * 179.97438 * 22 21 19 40 40 H 1.08997 * 109.47583 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47789 * 300.04547 * 23 22 21 42 42 H 1.09000 * 109.29594 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.49921 * 60.04084 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6620 -0.0005 13 7 1.5108 -4.9342 -0.0012 14 6 0.7605 -5.1092 1.2489 15 6 -0.1023 -6.3698 1.1562 16 6 0.7986 -7.5822 0.9050 17 1 0.1846 -8.4761 0.7956 18 8 1.6933 -7.7491 2.0067 19 6 1.6020 -7.3526 -0.3786 20 1 2.2751 -8.1941 -0.5429 21 6 0.6400 -7.2210 -1.5612 22 6 1.4377 -6.9792 -2.8440 23 6 2.2506 -5.6906 -2.7037 24 6 3.2113 -5.8235 -1.5236 25 6 2.4170 -6.0649 -0.2389 26 1 3.1055 -6.1606 0.6007 27 1 -0.4850 0.8401 0.0004 28 1 0.9210 -2.5291 -1.9985 29 1 2.8720 -3.6043 0.8895 30 1 2.8720 -3.6042 -0.8905 31 1 0.1203 -4.2424 1.4126 32 1 1.4584 -5.2074 2.0804 33 1 -0.8107 -6.2663 0.3342 34 1 -0.6462 -6.5081 2.0907 35 1 1.2508 -7.8961 2.8539 36 1 0.0600 -8.1385 -1.6616 37 1 -0.0345 -6.3821 -1.3892 38 1 2.1126 -7.8177 -3.0158 39 1 0.7520 -6.8860 -3.6862 40 1 2.8187 -5.5179 -3.6178 41 1 1.5758 -4.8522 -2.5312 42 1 3.7900 -4.9051 -1.4251 43 1 3.8861 -6.6618 -1.6964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931506452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:13 Heat of formation + Delta-G solvation = -110.295999 kcal Electronic energy + Delta-G solvation = -22860.675559 eV Core-core repulsion = 19711.877607 eV Total energy + Delta-G solvation = -3148.797952 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.23528 -36.70933 -36.00876 -34.24279 -32.42855 -32.01399 -29.94882 -29.22329 -27.66372 -24.99372 -23.58904 -22.71023 -21.77304 -20.41576 -19.89289 -18.11392 -16.85537 -16.61120 -15.58803 -15.32581 -15.07360 -14.78715 -14.53993 -14.01047 -13.88720 -13.41294 -13.19188 -12.88958 -12.75925 -12.33550 -11.98307 -11.84993 -11.70315 -11.35591 -11.07784 -11.01643 -10.96875 -10.84022 -10.73598 -10.61933 -10.43359 -10.20347 -10.03655 -9.81532 -9.62084 -9.38544 -8.85981 -8.50997 -8.02104 -7.43488 -5.96577 -4.14383 3.30702 3.35967 3.37820 4.21839 4.38473 4.56614 4.86813 4.92069 5.10025 5.23189 5.26529 5.31111 5.43384 5.58941 5.64125 5.73235 5.79835 5.84044 5.89260 5.94598 5.96109 6.04144 6.13544 6.17724 6.28283 6.31550 6.41934 6.49260 6.53426 6.55549 6.59323 6.67454 6.73236 6.90015 6.94740 7.68296 7.70699 7.79309 7.85489 7.97572 8.26584 8.89671 9.50825 9.67578 11.07364 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.005804 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.688863 B = 4822.929828 C = 5245.578025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.887 3.113 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.574 4.574 8 H 0.052 0.948 9 C 0.240 3.760 10 H 0.052 0.948 11 O -0.552 6.552 12 C 0.026 3.974 13 N -0.513 5.513 14 C 0.061 3.939 15 C -0.148 4.148 16 C 0.106 3.894 17 H 0.049 0.951 18 O -0.567 6.567 19 C -0.066 4.066 20 H 0.068 0.932 21 C -0.107 4.107 22 C -0.109 4.109 23 C -0.114 4.114 24 C -0.115 4.115 25 C 0.093 3.907 26 H 0.037 0.963 27 H 0.260 0.740 28 H 0.340 0.660 29 H 0.021 0.979 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.027 0.973 33 H 0.083 0.917 34 H 0.060 0.940 35 H 0.372 0.628 36 H 0.048 0.952 37 H 0.087 0.913 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.668 -15.345 -0.897 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.125 4.125 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.612 4.612 8 H 0.071 0.929 9 C 0.181 3.819 10 H 0.070 0.930 11 O -0.354 6.354 12 C -0.101 4.101 13 N -0.238 5.238 14 C -0.067 4.067 15 C -0.186 4.186 16 C 0.047 3.953 17 H 0.067 0.933 18 O -0.372 6.372 19 C -0.085 4.085 20 H 0.087 0.913 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.152 4.152 24 C -0.153 4.153 25 C -0.016 4.016 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.183 0.817 29 H 0.039 0.961 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.045 0.955 33 H 0.101 0.899 34 H 0.079 0.921 35 H 0.219 0.781 36 H 0.067 0.933 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.124 -15.183 -1.289 15.279 hybrid contribution 1.210 0.889 0.894 1.747 sum 2.333 -14.295 -0.395 14.489 Atomic orbital electron populations 1.70070 1.05858 1.26387 1.47166 1.25004 0.94659 0.98952 0.93932 0.86771 0.79744 0.83388 0.78640 1.20168 1.21233 1.20286 1.21645 0.93082 0.91768 1.54711 0.92928 1.19277 0.87748 0.88488 0.86343 0.93042 1.86561 1.37651 1.96304 1.14876 1.23145 0.97434 0.89876 0.99627 1.61943 1.26618 1.01396 1.33833 1.21943 0.96638 0.97486 0.90638 1.22318 0.98621 0.95580 1.02091 1.21913 0.90468 0.95916 0.86986 0.93345 1.86514 1.36941 1.95194 1.18530 1.21103 0.97107 0.97406 0.92848 0.91327 1.21500 0.97873 1.01715 0.93367 1.21411 0.98459 0.97682 0.97123 1.21409 0.98374 0.98922 0.96489 1.21606 0.97527 1.01175 0.94944 1.21432 0.92969 0.90843 0.96362 0.94483 0.93029 0.81679 0.96066 0.91191 0.89914 0.95476 0.89884 0.92087 0.78139 0.93310 0.89448 0.93238 0.92379 0.93227 0.89512 0.91602 0.92689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.40 12.84 55.43 0.71 -24.69 16 2 C 0.08 2.26 5.40 -17.82 -0.10 2.16 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.57 -15.75 8.76 -34.44 -0.30 -16.05 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.24 6.00 2.70 -27.89 -0.08 5.92 16 10 H 0.05 1.43 6.43 -51.93 -0.33 1.10 16 11 O -0.55 -14.08 12.60 -35.23 -0.44 -14.52 16 12 C 0.03 0.55 4.19 -3.83 -0.02 0.53 16 13 N -0.51 -9.13 2.89 -226.73 -0.65 -9.78 16 14 C 0.06 1.06 5.16 -3.83 -0.02 1.04 16 15 C -0.15 -2.04 5.44 -26.64 -0.14 -2.19 16 16 C 0.11 1.35 3.30 -26.58 -0.09 1.27 16 17 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 18 O -0.57 -7.37 12.17 -35.23 -0.43 -7.80 16 19 C -0.07 -0.90 2.24 -90.52 -0.20 -1.10 16 20 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 21 C -0.11 -1.39 4.74 -26.73 -0.13 -1.52 16 22 C -0.11 -1.36 5.92 -26.74 -0.16 -1.52 16 23 C -0.11 -1.61 5.75 -26.86 -0.15 -1.76 16 24 C -0.11 -1.68 4.90 -26.88 -0.13 -1.81 16 25 C 0.09 1.46 1.90 -67.75 -0.13 1.33 16 26 H 0.04 0.65 7.75 -51.93 -0.40 0.25 16 27 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 28 H 0.34 7.89 9.04 45.56 0.41 8.30 16 29 H 0.02 0.46 8.12 -51.92 -0.42 0.03 16 30 H 0.07 1.41 5.64 -51.93 -0.29 1.12 16 31 H 0.08 1.64 6.22 -51.93 -0.32 1.32 16 32 H 0.03 0.48 7.76 -51.93 -0.40 0.08 16 33 H 0.08 1.20 6.54 -51.93 -0.34 0.86 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.37 3.32 9.08 45.56 0.41 3.73 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.09 1.32 5.95 -51.93 -0.31 1.01 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.44 7.53 -51.93 -0.39 1.05 16 42 H 0.07 1.03 6.11 -51.93 -0.32 0.71 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -30.32 319.10 -8.30 -38.62 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.63 Total: 10.80 kcal Atomic # 6 Polarization: -12.05 SS G_CDS: -1.64 Total: -13.69 kcal Atomic # 7 Polarization: -34.53 SS G_CDS: 0.06 Total: -34.47 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.87 Total: -22.32 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.32 -8.30 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931506452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.672 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds