Wall clock time and date at job start Mon Mar 30 2020 01:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00016 * 2 1 4 4 H 1.48503 * 109.47299 * 240.00588 * 3 2 1 5 5 H 1.48501 * 109.46959 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47111 * 120.00594 * 3 2 1 7 7 C 1.37872 * 120.00178 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00095 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00112 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47378 * 300.00497 * 9 7 2 11 11 O 1.42903 * 109.47052 * 60.00034 * 9 7 2 12 12 C 1.52993 * 109.47604 * 180.02562 * 9 7 2 13 13 N 1.46899 * 109.47350 * 180.02562 * 12 9 7 14 14 C 1.46845 * 110.99856 * 294.20501 * 13 12 9 15 15 C 1.53037 * 109.55232 * 174.25156 * 14 13 12 16 16 C 1.53130 * 109.29270 * 59.11887 * 15 14 13 17 17 H 1.08992 * 109.53157 * 182.41089 * 16 15 14 18 18 O 1.42904 * 109.52960 * 62.26509 * 16 15 14 19 19 C 1.53155 * 109.11129 * 302.30858 * 16 15 14 20 20 H 1.09004 * 109.54206 * 177.76289 * 19 16 15 21 21 C 1.53015 * 109.31610 * 298.06261 * 19 16 15 22 22 C 1.52991 * 109.50050 * 179.50854 * 21 19 16 23 23 C 1.52999 * 109.46659 * 299.95536 * 22 21 19 24 24 C 1.52748 * 109.37522 * 60.03872 * 23 22 21 25 25 C 1.46837 * 110.99865 * 170.01510 * 13 12 9 26 26 H 1.09002 * 109.43879 * 65.91031 * 25 13 12 27 27 H 0.97002 * 120.00052 * 359.97438 * 1 2 3 28 28 H 0.96710 * 113.99941 * 60.00169 * 11 9 7 29 29 H 1.09007 * 109.46934 * 59.99939 * 12 9 7 30 30 H 1.09000 * 109.47155 * 300.00629 * 12 9 7 31 31 H 1.08995 * 109.45803 * 54.23140 * 14 13 12 32 32 H 1.08995 * 109.44642 * 294.26801 * 14 13 12 33 33 H 1.09001 * 109.50429 * 299.17649 * 15 14 13 34 34 H 1.08999 * 109.50351 * 179.06044 * 15 14 13 35 35 H 0.96700 * 113.99553 * 60.14987 * 18 16 15 36 36 H 1.09005 * 109.47136 * 299.51876 * 21 19 16 37 37 H 1.09004 * 109.46716 * 59.49994 * 21 19 16 38 38 H 1.08999 * 109.47307 * 59.95577 * 22 21 19 39 39 H 1.09002 * 109.47023 * 179.97438 * 22 21 19 40 40 H 1.08997 * 109.47583 * 180.02562 * 23 22 21 41 41 H 1.09000 * 109.47789 * 300.04547 * 23 22 21 42 42 H 1.09000 * 109.29594 * 179.97438 * 24 23 22 43 43 H 1.09002 * 109.49921 * 60.04084 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2126 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1670 12 6 2.2453 -3.6620 -0.0005 13 7 1.5108 -4.9342 -0.0012 14 6 0.7605 -5.1092 1.2489 15 6 -0.1023 -6.3698 1.1562 16 6 0.7986 -7.5822 0.9050 17 1 0.1846 -8.4761 0.7956 18 8 1.6933 -7.7491 2.0067 19 6 1.6020 -7.3526 -0.3786 20 1 2.2751 -8.1941 -0.5429 21 6 0.6400 -7.2210 -1.5612 22 6 1.4377 -6.9792 -2.8440 23 6 2.2506 -5.6906 -2.7037 24 6 3.2113 -5.8235 -1.5236 25 6 2.4170 -6.0649 -0.2389 26 1 3.1055 -6.1606 0.6007 27 1 -0.4850 0.8401 0.0004 28 1 0.9210 -2.5291 -1.9985 29 1 2.8720 -3.6043 0.8895 30 1 2.8720 -3.6042 -0.8905 31 1 0.1203 -4.2424 1.4126 32 1 1.4584 -5.2074 2.0804 33 1 -0.8107 -6.2663 0.3342 34 1 -0.6462 -6.5081 2.0907 35 1 1.2508 -7.8961 2.8539 36 1 0.0600 -8.1385 -1.6616 37 1 -0.0345 -6.3821 -1.3892 38 1 2.1126 -7.8177 -3.0158 39 1 0.7520 -6.8860 -3.6862 40 1 2.8187 -5.5179 -3.6178 41 1 1.5758 -4.8522 -2.5312 42 1 3.7900 -4.9051 -1.4251 43 1 3.8861 -6.6618 -1.6964 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931506452.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:12 Heat of formation + Delta-G solvation = -133.251823 kcal Electronic energy + Delta-G solvation = -22861.670998 eV Core-core repulsion = 19711.877607 eV Total energy + Delta-G solvation = -3149.793391 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.45892 -38.09751 -37.45122 -35.77530 -34.20375 -33.59620 -31.16928 -30.62905 -29.31018 -26.75395 -24.91600 -24.08716 -23.03470 -21.84343 -21.32204 -19.41898 -18.78546 -17.67923 -16.82633 -16.72947 -16.59297 -16.46907 -16.09565 -15.66186 -15.34550 -14.89372 -14.54908 -14.47890 -13.99560 -13.76316 -13.24469 -13.11649 -13.01516 -12.97049 -12.77531 -12.76722 -12.45401 -12.30094 -12.18972 -11.99930 -11.92440 -11.60123 -11.28189 -11.05340 -10.93297 -10.74194 -10.55512 -10.53795 -10.02786 -8.94861 -8.12290 -6.38060 1.39498 1.41045 1.49204 2.38298 3.04258 3.13621 3.35984 3.74306 3.82433 3.97153 4.11384 4.17599 4.28549 4.35117 4.38659 4.47420 4.53598 4.60069 4.65708 4.69016 4.70718 4.77622 4.90667 4.92406 4.95125 5.01791 5.06726 5.11481 5.23388 5.24723 5.40565 5.46481 5.51210 5.56674 5.61928 5.74889 5.82785 6.07227 6.30473 6.44364 6.75485 6.92035 7.35819 7.64991 8.91641 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025181 B = 0.005804 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.688863 B = 4822.929828 C = 5245.578025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.028 3.972 3 Si 0.957 3.043 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.591 4.591 8 H 0.054 0.946 9 C 0.245 3.755 10 H 0.016 0.984 11 O -0.564 6.564 12 C 0.046 3.954 13 N -0.511 5.511 14 C 0.061 3.939 15 C -0.140 4.140 16 C 0.110 3.890 17 H 0.078 0.922 18 O -0.582 6.582 19 C -0.065 4.065 20 H 0.082 0.918 21 C -0.103 4.103 22 C -0.106 4.106 23 C -0.112 4.112 24 C -0.113 4.113 25 C 0.092 3.908 26 H 0.018 0.982 27 H 0.261 0.739 28 H 0.349 0.651 29 H 0.006 0.994 30 H 0.076 0.924 31 H 0.047 0.953 32 H 0.019 0.981 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.390 0.610 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.049 0.951 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.370 -17.061 -1.587 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.174 4.174 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.629 4.629 8 H 0.072 0.928 9 C 0.187 3.813 10 H 0.034 0.966 11 O -0.366 6.366 12 C -0.082 4.082 13 N -0.235 5.235 14 C -0.067 4.067 15 C -0.178 4.178 16 C 0.052 3.948 17 H 0.096 0.904 18 O -0.390 6.390 19 C -0.084 4.084 20 H 0.100 0.900 21 C -0.140 4.140 22 C -0.144 4.144 23 C -0.150 4.150 24 C -0.151 4.151 25 C -0.016 4.016 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.193 0.807 29 H 0.025 0.975 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.239 0.761 36 H 0.092 0.908 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.833 -16.917 -1.970 17.130 hybrid contribution 0.985 1.399 1.140 2.056 sum 2.818 -15.518 -0.830 15.794 Atomic orbital electron populations 1.70210 1.07547 1.27326 1.48348 1.25851 0.95471 1.02701 0.93395 0.85657 0.78426 0.78710 0.79029 1.19135 1.20850 1.19627 1.22036 0.93362 0.93089 1.54395 0.92772 1.19060 0.87578 0.89725 0.84985 0.96597 1.86505 1.38287 1.96420 1.15425 1.22739 0.96085 0.90257 0.99137 1.61916 1.26676 1.00949 1.33991 1.21911 0.96416 0.98193 0.90219 1.22281 0.98208 0.94226 1.03111 1.21898 0.90204 0.96101 0.86618 0.90406 1.86478 1.37738 1.95182 1.19638 1.21142 0.97304 0.96070 0.93857 0.90018 1.21451 0.97494 1.01836 0.93248 1.21406 0.98640 0.97161 0.97150 1.21357 0.97999 0.98941 0.96666 1.21607 0.97659 1.01253 0.94588 1.21516 0.92763 0.91074 0.96237 0.96395 0.93016 0.80667 0.97546 0.90587 0.93442 0.96267 0.90375 0.89946 0.76099 0.90833 0.92039 0.91289 0.91602 0.91997 0.92603 0.93237 0.90527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.38 12.84 21.45 0.28 -54.11 16 2 C 0.03 1.61 5.40 84.65 0.46 2.07 16 3 Si 0.96 44.02 29.54 68.60 2.03 46.05 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.59 -33.25 8.76 25.60 0.22 -33.02 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.24 12.82 2.70 29.85 0.08 12.90 16 10 H 0.02 0.96 6.43 -2.39 -0.02 0.94 16 11 O -0.56 -29.85 12.60 -148.98 -1.88 -31.73 16 12 C 0.05 1.98 4.19 86.30 0.36 2.34 16 13 N -0.51 -18.64 2.89 -871.24 -2.51 -21.15 16 14 C 0.06 2.18 5.16 86.33 0.45 2.63 16 15 C -0.14 -3.74 5.44 30.65 0.17 -3.57 16 16 C 0.11 2.54 3.30 30.69 0.10 2.64 16 17 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 18 O -0.58 -13.83 12.17 -148.98 -1.81 -15.64 16 19 C -0.06 -1.62 2.24 -10.73 -0.02 -1.64 16 20 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 21 C -0.10 -2.41 4.74 30.60 0.15 -2.26 16 22 C -0.11 -2.36 5.92 30.59 0.18 -2.18 16 23 C -0.11 -3.01 5.75 30.51 0.18 -2.83 16 24 C -0.11 -3.19 4.90 30.50 0.15 -3.04 16 25 C 0.09 2.86 1.90 44.92 0.09 2.94 16 26 H 0.02 0.63 7.75 -2.39 -0.02 0.61 16 27 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 28 H 0.35 16.75 9.04 -74.05 -0.67 16.09 16 29 H 0.01 0.29 8.12 -2.38 -0.02 0.27 16 30 H 0.08 3.16 5.64 -2.39 -0.01 3.15 16 31 H 0.05 2.02 6.22 -2.39 -0.01 2.00 16 32 H 0.02 0.71 7.76 -2.39 -0.02 0.69 16 33 H 0.08 2.19 6.54 -2.39 -0.02 2.17 16 34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.39 6.01 9.08 -74.06 -0.67 5.34 16 36 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.06 1.79 5.95 -2.38 -0.01 1.78 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.06 1.85 7.53 -2.39 -0.02 1.83 16 42 H 0.05 1.53 6.11 -2.39 -0.01 1.52 16 43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -66.57 319.10 -1.69 -68.26 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: -0.33 Total: 31.35 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: 2.55 Total: -23.03 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -2.24 Total: -75.26 kcal Atomic # 8 Polarization: -43.68 SS G_CDS: -3.69 Total: -47.37 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -66.57 -1.69 -68.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931506452.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.995 kcal (2) G-P(sol) polarization free energy of solvation -66.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds