Wall clock time and date at job start Mon Mar 30 2020 01:34:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31515 * 1
3 3 Si 1.86804 * 120.00016 * 2 1
4 4 H 1.48503 * 109.47299 * 240.00588 * 3 2 1
5 5 H 1.48501 * 109.46959 * 0.02562 * 3 2 1
6 6 H 1.48502 * 109.47111 * 120.00594 * 3 2 1
7 7 C 1.37872 * 120.00178 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00095 * 179.97438 * 7 2 1
9 9 C 1.50700 * 120.00112 * 359.97438 * 7 2 1
10 10 H 1.09000 * 109.47378 * 300.00497 * 9 7 2
11 11 O 1.42903 * 109.47052 * 60.00034 * 9 7 2
12 12 C 1.52993 * 109.47604 * 180.02562 * 9 7 2
13 13 N 1.46899 * 109.47350 * 180.02562 * 12 9 7
14 14 C 1.46845 * 110.99856 * 294.20501 * 13 12 9
15 15 C 1.53037 * 109.55232 * 174.25156 * 14 13 12
16 16 C 1.53130 * 109.29270 * 59.11887 * 15 14 13
17 17 H 1.08992 * 109.53157 * 182.41089 * 16 15 14
18 18 O 1.42904 * 109.52960 * 62.26509 * 16 15 14
19 19 C 1.53155 * 109.11129 * 302.30858 * 16 15 14
20 20 H 1.09004 * 109.54206 * 177.76289 * 19 16 15
21 21 C 1.53015 * 109.31610 * 298.06261 * 19 16 15
22 22 C 1.52991 * 109.50050 * 179.50854 * 21 19 16
23 23 C 1.52999 * 109.46659 * 299.95536 * 22 21 19
24 24 C 1.52748 * 109.37522 * 60.03872 * 23 22 21
25 25 C 1.46837 * 110.99865 * 170.01510 * 13 12 9
26 26 H 1.09002 * 109.43879 * 65.91031 * 25 13 12
27 27 H 0.97002 * 120.00052 * 359.97438 * 1 2 3
28 28 H 0.96710 * 113.99941 * 60.00169 * 11 9 7
29 29 H 1.09007 * 109.46934 * 59.99939 * 12 9 7
30 30 H 1.09000 * 109.47155 * 300.00629 * 12 9 7
31 31 H 1.08995 * 109.45803 * 54.23140 * 14 13 12
32 32 H 1.08995 * 109.44642 * 294.26801 * 14 13 12
33 33 H 1.09001 * 109.50429 * 299.17649 * 15 14 13
34 34 H 1.08999 * 109.50351 * 179.06044 * 15 14 13
35 35 H 0.96700 * 113.99553 * 60.14987 * 18 16 15
36 36 H 1.09005 * 109.47136 * 299.51876 * 21 19 16
37 37 H 1.09004 * 109.46716 * 59.49994 * 21 19 16
38 38 H 1.08999 * 109.47307 * 59.95577 * 22 21 19
39 39 H 1.09002 * 109.47023 * 179.97438 * 22 21 19
40 40 H 1.08997 * 109.47583 * 180.02562 * 23 22 21
41 41 H 1.09000 * 109.47789 * 300.04547 * 23 22 21
42 42 H 1.09000 * 109.29594 * 179.97438 * 24 23 22
43 43 H 1.09002 * 109.49921 * 60.04084 * 24 23 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6178 0.0000
4 1 3.1028 1.6965 -1.2126
5 1 1.2841 2.7465 0.0006
6 1 3.1030 1.6964 1.2124
7 6 2.0045 -1.1940 -0.0005
8 1 3.0846 -1.1940 -0.0010
9 6 1.2511 -2.4991 -0.0005
10 1 0.6247 -2.5571 0.8896
11 8 0.4291 -2.5746 -1.1670
12 6 2.2453 -3.6620 -0.0005
13 7 1.5108 -4.9342 -0.0012
14 6 0.7605 -5.1092 1.2489
15 6 -0.1023 -6.3698 1.1562
16 6 0.7986 -7.5822 0.9050
17 1 0.1846 -8.4761 0.7956
18 8 1.6933 -7.7491 2.0067
19 6 1.6020 -7.3526 -0.3786
20 1 2.2751 -8.1941 -0.5429
21 6 0.6400 -7.2210 -1.5612
22 6 1.4377 -6.9792 -2.8440
23 6 2.2506 -5.6906 -2.7037
24 6 3.2113 -5.8235 -1.5236
25 6 2.4170 -6.0649 -0.2389
26 1 3.1055 -6.1606 0.6007
27 1 -0.4850 0.8401 0.0004
28 1 0.9210 -2.5291 -1.9985
29 1 2.8720 -3.6043 0.8895
30 1 2.8720 -3.6042 -0.8905
31 1 0.1203 -4.2424 1.4126
32 1 1.4584 -5.2074 2.0804
33 1 -0.8107 -6.2663 0.3342
34 1 -0.6462 -6.5081 2.0907
35 1 1.2508 -7.8961 2.8539
36 1 0.0600 -8.1385 -1.6616
37 1 -0.0345 -6.3821 -1.3892
38 1 2.1126 -7.8177 -3.0158
39 1 0.7520 -6.8860 -3.6862
40 1 2.8187 -5.5179 -3.6178
41 1 1.5758 -4.8522 -2.5312
42 1 3.7900 -4.9051 -1.4251
43 1 3.8861 -6.6618 -1.6964
RHF calculation, no. of doubly occupied orbitals= 52
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000931506452.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:34:12
Heat of formation + Delta-G solvation = -133.251823 kcal
Electronic energy + Delta-G solvation = -22861.670998 eV
Core-core repulsion = 19711.877607 eV
Total energy + Delta-G solvation = -3149.793391 eV
No. of doubly occupied orbitals = 52
Molecular weight
(most abundant/longest-lived isotopes) = 269.178 amu
Computer time = 0.48 seconds
Orbital eigenvalues (eV)
-41.45892 -38.09751 -37.45122 -35.77530 -34.20375 -33.59620 -31.16928 -30.62905
-29.31018 -26.75395 -24.91600 -24.08716 -23.03470 -21.84343 -21.32204 -19.41898
-18.78546 -17.67923 -16.82633 -16.72947 -16.59297 -16.46907 -16.09565 -15.66186
-15.34550 -14.89372 -14.54908 -14.47890 -13.99560 -13.76316 -13.24469 -13.11649
-13.01516 -12.97049 -12.77531 -12.76722 -12.45401 -12.30094 -12.18972 -11.99930
-11.92440 -11.60123 -11.28189 -11.05340 -10.93297 -10.74194 -10.55512 -10.53795
-10.02786 -8.94861 -8.12290 -6.38060 1.39498 1.41045 1.49204 2.38298
3.04258 3.13621 3.35984 3.74306 3.82433 3.97153 4.11384 4.17599
4.28549 4.35117 4.38659 4.47420 4.53598 4.60069 4.65708 4.69016
4.70718 4.77622 4.90667 4.92406 4.95125 5.01791 5.06726 5.11481
5.23388 5.24723 5.40565 5.46481 5.51210 5.56674 5.61928 5.74889
5.82785 6.07227 6.30473 6.44364 6.75485 6.92035 7.35819 7.64991
8.91641
Molecular weight = 269.18amu
Principal moments of inertia in cm(-1)
A = 0.025181 B = 0.005804 C = 0.005337
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1111.688863 B = 4822.929828 C = 5245.578025
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.897 5.897
2 C 0.028 3.972
3 Si 0.957 3.043
4 H -0.267 1.267
5 H -0.283 1.283
6 H -0.271 1.271
7 C -0.591 4.591
8 H 0.054 0.946
9 C 0.245 3.755
10 H 0.016 0.984
11 O -0.564 6.564
12 C 0.046 3.954
13 N -0.511 5.511
14 C 0.061 3.939
15 C -0.140 4.140
16 C 0.110 3.890
17 H 0.078 0.922
18 O -0.582 6.582
19 C -0.065 4.065
20 H 0.082 0.918
21 C -0.103 4.103
22 C -0.106 4.106
23 C -0.112 4.112
24 C -0.113 4.113
25 C 0.092 3.908
26 H 0.018 0.982
27 H 0.261 0.739
28 H 0.349 0.651
29 H 0.006 0.994
30 H 0.076 0.924
31 H 0.047 0.953
32 H 0.019 0.981
33 H 0.078 0.922
34 H 0.082 0.918
35 H 0.390 0.610
36 H 0.073 0.927
37 H 0.061 0.939
38 H 0.068 0.932
39 H 0.065 0.935
40 H 0.061 0.939
41 H 0.055 0.945
42 H 0.049 0.951
43 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.370 -17.061 -1.587 17.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.534 5.534
2 C -0.174 4.174
3 Si 0.782 3.218
4 H -0.191 1.191
5 H -0.209 1.209
6 H -0.196 1.196
7 C -0.629 4.629
8 H 0.072 0.928
9 C 0.187 3.813
10 H 0.034 0.966
11 O -0.366 6.366
12 C -0.082 4.082
13 N -0.235 5.235
14 C -0.067 4.067
15 C -0.178 4.178
16 C 0.052 3.948
17 H 0.096 0.904
18 O -0.390 6.390
19 C -0.084 4.084
20 H 0.100 0.900
21 C -0.140 4.140
22 C -0.144 4.144
23 C -0.150 4.150
24 C -0.151 4.151
25 C -0.016 4.016
26 H 0.036 0.964
27 H 0.070 0.930
28 H 0.193 0.807
29 H 0.025 0.975
30 H 0.094 0.906
31 H 0.066 0.934
32 H 0.037 0.963
33 H 0.096 0.904
34 H 0.101 0.899
35 H 0.239 0.761
36 H 0.092 0.908
37 H 0.080 0.920
38 H 0.087 0.913
39 H 0.084 0.916
40 H 0.080 0.920
41 H 0.074 0.926
42 H 0.068 0.932
43 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges 1.833 -16.917 -1.970 17.130
hybrid contribution 0.985 1.399 1.140 2.056
sum 2.818 -15.518 -0.830 15.794
Atomic orbital electron populations
1.70210 1.07547 1.27326 1.48348 1.25851 0.95471 1.02701 0.93395
0.85657 0.78426 0.78710 0.79029 1.19135 1.20850 1.19627 1.22036
0.93362 0.93089 1.54395 0.92772 1.19060 0.87578 0.89725 0.84985
0.96597 1.86505 1.38287 1.96420 1.15425 1.22739 0.96085 0.90257
0.99137 1.61916 1.26676 1.00949 1.33991 1.21911 0.96416 0.98193
0.90219 1.22281 0.98208 0.94226 1.03111 1.21898 0.90204 0.96101
0.86618 0.90406 1.86478 1.37738 1.95182 1.19638 1.21142 0.97304
0.96070 0.93857 0.90018 1.21451 0.97494 1.01836 0.93248 1.21406
0.98640 0.97161 0.97150 1.21357 0.97999 0.98941 0.96666 1.21607
0.97659 1.01253 0.94588 1.21516 0.92763 0.91074 0.96237 0.96395
0.93016 0.80667 0.97546 0.90587 0.93442 0.96267 0.90375 0.89946
0.76099 0.90833 0.92039 0.91289 0.91602 0.91997 0.92603 0.93237
0.90527
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -54.38 12.84 21.45 0.28 -54.11 16
2 C 0.03 1.61 5.40 84.65 0.46 2.07 16
3 Si 0.96 44.02 29.54 68.60 2.03 46.05 16
4 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16
6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16
7 C -0.59 -33.25 8.76 25.60 0.22 -33.02 16
8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16
9 C 0.24 12.82 2.70 29.85 0.08 12.90 16
10 H 0.02 0.96 6.43 -2.39 -0.02 0.94 16
11 O -0.56 -29.85 12.60 -148.98 -1.88 -31.73 16
12 C 0.05 1.98 4.19 86.30 0.36 2.34 16
13 N -0.51 -18.64 2.89 -871.24 -2.51 -21.15 16
14 C 0.06 2.18 5.16 86.33 0.45 2.63 16
15 C -0.14 -3.74 5.44 30.65 0.17 -3.57 16
16 C 0.11 2.54 3.30 30.69 0.10 2.64 16
17 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16
18 O -0.58 -13.83 12.17 -148.98 -1.81 -15.64 16
19 C -0.06 -1.62 2.24 -10.73 -0.02 -1.64 16
20 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16
21 C -0.10 -2.41 4.74 30.60 0.15 -2.26 16
22 C -0.11 -2.36 5.92 30.59 0.18 -2.18 16
23 C -0.11 -3.01 5.75 30.51 0.18 -2.83 16
24 C -0.11 -3.19 4.90 30.50 0.15 -3.04 16
25 C 0.09 2.86 1.90 44.92 0.09 2.94 16
26 H 0.02 0.63 7.75 -2.39 -0.02 0.61 16
27 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16
28 H 0.35 16.75 9.04 -74.05 -0.67 16.09 16
29 H 0.01 0.29 8.12 -2.38 -0.02 0.27 16
30 H 0.08 3.16 5.64 -2.39 -0.01 3.15 16
31 H 0.05 2.02 6.22 -2.39 -0.01 2.00 16
32 H 0.02 0.71 7.76 -2.39 -0.02 0.69 16
33 H 0.08 2.19 6.54 -2.39 -0.02 2.17 16
34 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
35 H 0.39 6.01 9.08 -74.06 -0.67 5.34 16
36 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16
37 H 0.06 1.79 5.95 -2.38 -0.01 1.78 16
38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16
39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16
40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16
41 H 0.06 1.85 7.53 -2.39 -0.02 1.83 16
42 H 0.05 1.53 6.11 -2.39 -0.01 1.52 16
43 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16
Total: -1.00 -66.57 319.10 -1.69 -68.26
By element:
Atomic # 1 Polarization: 31.68 SS G_CDS: -0.33 Total: 31.35 kcal
Atomic # 6 Polarization: -25.58 SS G_CDS: 2.55 Total: -23.03 kcal
Atomic # 7 Polarization: -73.02 SS G_CDS: -2.24 Total: -75.26 kcal
Atomic # 8 Polarization: -43.68 SS G_CDS: -3.69 Total: -47.37 kcal
Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal
Total: -66.57 -1.69 -68.26 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000931506452.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -64.995 kcal
(2) G-P(sol) polarization free energy of solvation -66.570 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.565 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.687 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.257 kcal
(6) G-S(sol) free energy of system = (1) + (5) -133.252 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.48 seconds