Wall clock time and date at job start Mon Mar 30 2020 01:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99935 * 2 1 4 4 H 1.48497 * 109.46955 * 269.99965 * 3 2 1 5 5 H 1.48502 * 109.46954 * 29.99734 * 3 2 1 6 6 H 1.48496 * 109.47180 * 149.99762 * 3 2 1 7 7 C 1.37869 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00509 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46866 * 300.00189 * 9 7 2 11 11 O 1.42896 * 109.46796 * 59.99861 * 9 7 2 12 12 C 1.53001 * 109.47312 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46887 * 180.66620 * 12 9 7 14 14 C 1.46847 * 111.00113 * 169.66705 * 13 12 9 15 15 C 1.53031 * 109.52543 * 185.83903 * 14 13 12 16 16 C 1.53120 * 109.27859 * 300.81733 * 15 14 13 17 17 O 1.42898 * 109.52503 * 297.75467 * 16 15 14 18 18 C 1.52998 * 109.52729 * 177.55971 * 16 15 14 19 19 C 1.53772 * 113.61915 * 159.45561 * 18 16 15 20 20 C 1.53956 * 87.02199 * 220.05303 * 19 18 16 21 21 C 1.53779 * 87.11198 * 25.35950 * 20 19 18 22 22 C 1.53119 * 109.15946 * 57.65667 * 16 15 14 23 23 C 1.46846 * 110.99872 * 293.87484 * 13 12 9 24 24 H 0.97007 * 120.00493 * 0.02562 * 1 2 3 25 25 H 0.96701 * 114.00296 * 60.00424 * 11 9 7 26 26 H 1.09000 * 109.46666 * 300.66361 * 12 9 7 27 27 H 1.08994 * 109.47091 * 60.66485 * 12 9 7 28 28 H 1.09003 * 109.46318 * 305.85811 * 14 13 12 29 29 H 1.08999 * 109.46370 * 65.82097 * 14 13 12 30 30 H 1.09003 * 109.50437 * 180.87925 * 15 14 13 31 31 H 1.09002 * 109.53952 * 60.77965 * 15 14 13 32 32 H 0.96694 * 114.00510 * 59.67560 * 17 16 15 33 33 H 1.09002 * 112.85141 * 290.65936 * 18 16 15 34 34 H 1.09006 * 113.61159 * 334.56682 * 19 18 16 35 35 H 1.08997 * 113.61891 * 105.47364 * 19 18 16 36 36 H 1.09005 * 113.53320 * 270.81361 * 20 19 18 37 37 H 1.08996 * 113.67064 * 139.93952 * 20 19 18 38 38 H 1.08997 * 113.61513 * 220.08960 * 21 20 19 39 39 H 1.09001 * 113.61042 * 89.19246 * 21 20 19 40 40 H 1.08996 * 109.50768 * 182.40463 * 22 16 15 41 41 H 1.09001 * 109.53677 * 62.30230 * 22 16 15 42 42 H 1.09001 * 109.46230 * 294.17752 * 23 13 12 43 43 H 1.09000 * 109.46585 * 54.14897 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 8 0.4290 -2.5756 -1.1647 12 6 2.2453 -3.6621 0.0027 13 7 1.5108 -4.9342 -0.0122 14 6 2.4179 -6.0627 -0.2576 15 6 1.6036 -7.3493 -0.4112 16 6 0.7932 -7.5900 0.8655 17 8 1.6828 -7.7682 1.9694 18 6 -0.0695 -8.8421 0.6951 19 6 -0.5268 -9.4610 2.0264 20 6 -0.2607 -10.8357 1.3863 21 6 0.7461 -10.1256 0.4661 22 6 -0.1077 -6.3794 1.1246 23 6 0.7562 -5.1208 1.2336 24 1 -0.4851 0.8401 -0.0004 25 1 0.9208 -2.5308 -1.9961 26 1 2.8797 -3.5983 -0.8813 27 1 2.8640 -3.6102 0.8985 28 1 2.9852 -5.8808 -1.1704 29 1 3.1049 -6.1657 0.5823 30 1 2.2782 -8.1891 -0.5778 31 1 0.9261 -7.2528 -1.2596 32 1 2.2624 -7.0118 2.1336 33 1 -0.8778 -8.7046 -0.0231 34 1 0.1338 -9.2339 2.8632 35 1 -1.5773 -9.2803 2.2539 36 1 -1.1224 -11.2439 0.8580 37 1 0.1992 -11.5531 2.0658 38 1 0.7218 -10.4805 -0.5642 39 1 1.7553 -10.0805 0.8755 40 1 -0.6559 -6.5261 2.0552 41 1 -0.8127 -6.2666 0.3009 42 1 1.4510 -5.2282 2.0665 43 1 0.1164 -4.2548 1.4039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932813954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:43 Heat of formation + Delta-G solvation = -85.740684 kcal Electronic energy + Delta-G solvation = -21878.175684 eV Core-core repulsion = 18730.442531 eV Total energy + Delta-G solvation = -3147.733153 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.30506 -37.96373 -36.08518 -34.62614 -32.08947 -31.68286 -30.74792 -28.38737 -26.23525 -25.67296 -24.07298 -22.91649 -22.03322 -20.23967 -19.48237 -19.21884 -17.21625 -16.76114 -15.64405 -15.30201 -14.88568 -14.74438 -14.58358 -14.40100 -14.05594 -13.63005 -13.47334 -12.83363 -12.52457 -12.42972 -12.29620 -12.14398 -11.62844 -11.57605 -11.34338 -11.14854 -11.08859 -10.98626 -10.89302 -10.75046 -10.50874 -10.47928 -10.38933 -10.06023 -9.65832 -9.47229 -8.94606 -8.56892 -8.09622 -7.64383 -6.00635 -4.19182 3.27001 3.34122 3.36386 4.23259 4.29703 4.47120 4.48284 4.66731 4.75755 4.80673 4.99605 5.16282 5.22143 5.27352 5.40095 5.53443 5.61540 5.65347 5.67835 5.81574 5.84557 5.85346 5.90914 5.95793 6.01682 6.06599 6.13920 6.22334 6.27093 6.34526 6.41477 6.46535 6.54855 6.59183 6.80761 7.53913 7.61023 7.72021 7.78091 7.87821 8.20200 8.84761 9.46577 9.62891 11.03399 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047643 B = 0.003865 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.559510 B = 7242.113985 C = 7374.631097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.575 4.575 8 H 0.054 0.946 9 C 0.237 3.763 10 H 0.054 0.946 11 O -0.553 6.553 12 C 0.031 3.969 13 N -0.525 5.525 14 C 0.051 3.949 15 C -0.136 4.136 16 C 0.144 3.856 17 O -0.560 6.560 18 C -0.097 4.097 19 C -0.129 4.129 20 C -0.145 4.145 21 C -0.130 4.130 22 C -0.137 4.137 23 C 0.054 3.946 24 H 0.260 0.740 25 H 0.342 0.658 26 H 0.063 0.937 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.022 0.978 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.372 0.628 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.022 0.978 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.524 -17.774 1.576 17.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.614 4.614 8 H 0.072 0.928 9 C 0.179 3.821 10 H 0.071 0.929 11 O -0.355 6.355 12 C -0.097 4.097 13 N -0.250 5.250 14 C -0.078 4.078 15 C -0.174 4.174 16 C 0.103 3.897 17 O -0.368 6.368 18 C -0.116 4.116 19 C -0.166 4.166 20 C -0.182 4.182 21 C -0.167 4.167 22 C -0.175 4.175 23 C -0.074 4.074 24 H 0.070 0.930 25 H 0.185 0.815 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.221 0.779 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.079 0.921 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.040 0.960 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.234 -18.269 1.692 18.349 hybrid contribution 1.898 1.647 0.215 2.523 sum 2.132 -16.622 1.907 16.867 Atomic orbital electron populations 1.70081 1.05900 1.26396 1.47004 1.25017 0.94682 0.99061 0.93856 0.86682 0.79936 0.83578 0.78218 1.20509 1.21117 1.19905 1.21660 0.93127 0.91675 1.54913 0.92789 1.19309 0.87760 0.88492 0.86501 0.92878 1.86555 1.37691 1.96298 1.14959 1.23081 0.97290 0.89853 0.99445 1.61933 1.26673 1.01759 1.34645 1.22097 0.94075 0.91318 1.00265 1.22177 0.99657 0.96849 0.98691 1.21019 0.89138 0.93913 0.85579 1.86413 1.53778 1.45233 1.51355 1.22546 0.97743 0.92567 0.98694 1.22859 1.00927 0.95288 0.97522 1.22841 0.99360 0.96832 0.99211 1.22855 0.98893 0.95723 0.99261 1.22197 0.98704 0.93905 1.02666 1.22097 0.96833 0.98686 0.89824 0.92996 0.81477 0.91864 0.95671 0.90918 0.95967 0.91394 0.90319 0.77939 0.88462 0.89004 0.92128 0.90680 0.91847 0.92063 0.89613 0.91300 0.90206 0.96014 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.32 12.84 55.43 0.71 -24.61 16 2 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 3 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.58 -15.68 8.76 -34.44 -0.30 -15.98 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.24 5.94 2.69 -27.88 -0.08 5.86 16 10 H 0.05 1.46 6.47 -51.93 -0.34 1.13 16 11 O -0.55 -14.34 12.58 -35.23 -0.44 -14.78 16 12 C 0.03 0.62 4.57 -3.82 -0.02 0.60 16 13 N -0.53 -9.18 4.51 -234.67 -1.06 -10.24 16 14 C 0.05 0.73 5.23 -3.84 -0.02 0.71 16 15 C -0.14 -1.70 4.89 -26.65 -0.13 -1.83 16 16 C 0.14 1.78 0.63 -90.50 -0.06 1.72 16 17 O -0.56 -7.10 11.06 -35.23 -0.39 -7.49 16 18 C -0.10 -1.07 3.05 -89.81 -0.27 -1.35 16 19 C -0.13 -1.37 7.49 -25.83 -0.19 -1.56 16 20 C -0.15 -1.36 8.09 -25.83 -0.21 -1.57 16 21 C -0.13 -1.32 6.71 -25.92 -0.17 -1.49 16 22 C -0.14 -1.93 5.09 -26.65 -0.14 -2.06 16 23 C 0.05 0.89 5.06 -3.83 -0.02 0.87 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.34 8.01 9.04 45.56 0.41 8.42 16 26 H 0.06 1.25 7.98 -51.93 -0.41 0.84 16 27 H 0.03 0.51 8.12 -51.93 -0.42 0.08 16 28 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 29 H 0.02 0.30 6.84 -51.93 -0.36 -0.05 16 30 H 0.07 0.78 7.60 -51.93 -0.39 0.39 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.37 4.41 5.86 45.56 0.27 4.68 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.09 1.09 7.04 -51.93 -0.37 0.73 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.95 7.72 -51.93 -0.40 0.54 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 41 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.02 0.34 6.85 -51.93 -0.36 -0.02 16 43 H 0.09 1.72 6.24 -51.93 -0.32 1.40 16 LS Contribution 328.45 15.07 4.95 4.95 Total: -1.00 -29.64 328.45 -8.98 -38.62 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -6.03 Total: 11.45 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: -1.70 Total: -13.95 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: -0.35 Total: -34.85 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.83 Total: -22.27 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.64 -8.98 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932813954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.119 kcal (2) G-P(sol) polarization free energy of solvation -29.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds