Wall clock time and date at job start Mon Mar 30 2020 01:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99935 * 2 1 4 4 H 1.48497 * 109.46955 * 269.99965 * 3 2 1 5 5 H 1.48502 * 109.46954 * 29.99734 * 3 2 1 6 6 H 1.48496 * 109.47180 * 149.99762 * 3 2 1 7 7 C 1.37869 * 119.99811 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00048 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00509 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46866 * 300.00189 * 9 7 2 11 11 O 1.42896 * 109.46796 * 59.99861 * 9 7 2 12 12 C 1.53001 * 109.47312 * 180.02562 * 9 7 2 13 13 N 1.46898 * 109.46887 * 180.66620 * 12 9 7 14 14 C 1.46847 * 111.00113 * 169.66705 * 13 12 9 15 15 C 1.53031 * 109.52543 * 185.83903 * 14 13 12 16 16 C 1.53120 * 109.27859 * 300.81733 * 15 14 13 17 17 O 1.42898 * 109.52503 * 297.75467 * 16 15 14 18 18 C 1.52998 * 109.52729 * 177.55971 * 16 15 14 19 19 C 1.53772 * 113.61915 * 159.45561 * 18 16 15 20 20 C 1.53956 * 87.02199 * 220.05303 * 19 18 16 21 21 C 1.53779 * 87.11198 * 25.35950 * 20 19 18 22 22 C 1.53119 * 109.15946 * 57.65667 * 16 15 14 23 23 C 1.46846 * 110.99872 * 293.87484 * 13 12 9 24 24 H 0.97007 * 120.00493 * 0.02562 * 1 2 3 25 25 H 0.96701 * 114.00296 * 60.00424 * 11 9 7 26 26 H 1.09000 * 109.46666 * 300.66361 * 12 9 7 27 27 H 1.08994 * 109.47091 * 60.66485 * 12 9 7 28 28 H 1.09003 * 109.46318 * 305.85811 * 14 13 12 29 29 H 1.08999 * 109.46370 * 65.82097 * 14 13 12 30 30 H 1.09003 * 109.50437 * 180.87925 * 15 14 13 31 31 H 1.09002 * 109.53952 * 60.77965 * 15 14 13 32 32 H 0.96694 * 114.00510 * 59.67560 * 17 16 15 33 33 H 1.09002 * 112.85141 * 290.65936 * 18 16 15 34 34 H 1.09006 * 113.61159 * 334.56682 * 19 18 16 35 35 H 1.08997 * 113.61891 * 105.47364 * 19 18 16 36 36 H 1.09005 * 113.53320 * 270.81361 * 20 19 18 37 37 H 1.08996 * 113.67064 * 139.93952 * 20 19 18 38 38 H 1.08997 * 113.61513 * 220.08960 * 21 20 19 39 39 H 1.09001 * 113.61042 * 89.19246 * 21 20 19 40 40 H 1.08996 * 109.50768 * 182.40463 * 22 16 15 41 41 H 1.09001 * 109.53677 * 62.30230 * 22 16 15 42 42 H 1.09001 * 109.46230 * 294.17752 * 23 13 12 43 43 H 1.09000 * 109.46585 * 54.14897 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6247 -2.5563 0.8920 11 8 0.4290 -2.5756 -1.1647 12 6 2.2453 -3.6621 0.0027 13 7 1.5108 -4.9342 -0.0122 14 6 2.4179 -6.0627 -0.2576 15 6 1.6036 -7.3493 -0.4112 16 6 0.7932 -7.5900 0.8655 17 8 1.6828 -7.7682 1.9694 18 6 -0.0695 -8.8421 0.6951 19 6 -0.5268 -9.4610 2.0264 20 6 -0.2607 -10.8357 1.3863 21 6 0.7461 -10.1256 0.4661 22 6 -0.1077 -6.3794 1.1246 23 6 0.7562 -5.1208 1.2336 24 1 -0.4851 0.8401 -0.0004 25 1 0.9208 -2.5308 -1.9961 26 1 2.8797 -3.5983 -0.8813 27 1 2.8640 -3.6102 0.8985 28 1 2.9852 -5.8808 -1.1704 29 1 3.1049 -6.1657 0.5823 30 1 2.2782 -8.1891 -0.5778 31 1 0.9261 -7.2528 -1.2596 32 1 2.2624 -7.0118 2.1336 33 1 -0.8778 -8.7046 -0.0231 34 1 0.1338 -9.2339 2.8632 35 1 -1.5773 -9.2803 2.2539 36 1 -1.1224 -11.2439 0.8580 37 1 0.1992 -11.5531 2.0658 38 1 0.7218 -10.4805 -0.5642 39 1 1.7553 -10.0805 0.8755 40 1 -0.6559 -6.5261 2.0552 41 1 -0.8127 -6.2666 0.3009 42 1 1.4510 -5.2282 2.0665 43 1 0.1164 -4.2548 1.4039 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932813954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:43 Heat of formation + Delta-G solvation = -107.741669 kcal Electronic energy + Delta-G solvation = -21879.129719 eV Core-core repulsion = 18730.442531 eV Total energy + Delta-G solvation = -3148.687188 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.35510 -39.14029 -37.60247 -36.08249 -34.21596 -32.94581 -31.94065 -30.07956 -27.66981 -26.52325 -25.65188 -24.15449 -23.22425 -21.92705 -20.53740 -20.17016 -19.09562 -18.01736 -16.71723 -16.64695 -16.46603 -16.24287 -15.97549 -15.65810 -15.58963 -15.18417 -14.97171 -14.28098 -13.87371 -13.36436 -13.27842 -13.22746 -13.12632 -12.96161 -12.84687 -12.69802 -12.51835 -12.48354 -12.23201 -12.12410 -12.03088 -11.87854 -11.30397 -11.23840 -11.01587 -10.71922 -10.61385 -10.45258 -10.06815 -9.08227 -8.13175 -6.39339 1.40478 1.40648 1.51513 2.38080 3.01212 3.13285 3.29186 3.55763 3.74607 3.82601 3.97220 3.98142 4.11185 4.20858 4.22771 4.32704 4.41749 4.47926 4.50056 4.60404 4.67838 4.83847 4.87603 4.91481 4.93861 5.00574 5.04593 5.05904 5.13287 5.14872 5.19484 5.23120 5.31565 5.45590 5.60784 5.73704 5.76113 6.01451 6.21373 6.33322 6.74298 6.74766 7.35203 7.63514 8.91153 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.047643 B = 0.003865 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.559510 B = 7242.113985 C = 7374.631097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.026 3.974 3 Si 0.960 3.040 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.589 4.589 8 H 0.059 0.941 9 C 0.238 3.762 10 H 0.019 0.981 11 O -0.569 6.569 12 C 0.048 3.952 13 N -0.536 5.536 14 C 0.050 3.950 15 C -0.128 4.128 16 C 0.150 3.850 17 O -0.562 6.562 18 C -0.101 4.101 19 C -0.132 4.132 20 C -0.138 4.138 21 C -0.126 4.126 22 C -0.129 4.129 23 C 0.056 3.944 24 H 0.261 0.739 25 H 0.352 0.648 26 H 0.070 0.930 27 H 0.025 0.975 28 H 0.078 0.922 29 H 0.034 0.966 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.375 0.625 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.032 0.968 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.745 -19.053 1.222 19.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.177 4.177 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.189 1.189 7 C -0.628 4.628 8 H 0.077 0.923 9 C 0.180 3.820 10 H 0.037 0.963 11 O -0.373 6.373 12 C -0.080 4.080 13 N -0.261 5.261 14 C -0.077 4.077 15 C -0.166 4.166 16 C 0.110 3.890 17 O -0.370 6.370 18 C -0.119 4.119 19 C -0.169 4.169 20 C -0.175 4.175 21 C -0.163 4.163 22 C -0.167 4.167 23 C -0.072 4.072 24 H 0.070 0.930 25 H 0.196 0.804 26 H 0.088 0.912 27 H 0.043 0.957 28 H 0.096 0.904 29 H 0.052 0.948 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.224 0.776 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.473 -19.568 1.336 19.669 hybrid contribution 1.495 2.018 0.343 2.535 sum 2.968 -17.549 1.679 17.878 Atomic orbital electron populations 1.70225 1.07674 1.27314 1.48434 1.25895 0.95468 1.02906 0.93405 0.85560 0.78693 0.78845 0.78471 1.19751 1.20974 1.18919 1.22072 0.93535 0.92889 1.54257 0.92300 1.19166 0.87779 0.90058 0.85029 0.96344 1.86502 1.38616 1.96454 1.15680 1.22670 0.95871 0.89718 0.99693 1.61844 1.27331 1.01761 1.35123 1.22182 0.93990 0.90635 1.00923 1.22131 0.99637 0.96380 0.98454 1.20973 0.88901 0.93657 0.85487 1.86428 1.53769 1.45379 1.51422 1.22603 0.97934 0.92228 0.99173 1.22841 1.00796 0.96360 0.96915 1.22833 0.99576 0.96170 0.98944 1.22816 0.98426 0.95000 1.00069 1.22136 0.98472 0.93594 1.02519 1.22015 0.96754 0.98395 0.90010 0.93031 0.80419 0.91169 0.95702 0.90403 0.94771 0.89541 0.90780 0.77594 0.88004 0.90330 0.91830 0.89442 0.91339 0.90919 0.90381 0.90847 0.91248 0.94989 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.19 12.84 21.44 0.28 -53.92 16 2 C 0.03 1.44 5.40 84.65 0.46 1.90 16 3 Si 0.96 43.33 29.54 68.60 2.03 45.36 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 7 C -0.59 -32.38 8.76 25.60 0.22 -32.15 16 8 H 0.06 3.11 7.74 -2.91 -0.02 3.08 16 9 C 0.24 12.18 2.69 29.85 0.08 12.26 16 10 H 0.02 1.08 6.47 -2.39 -0.02 1.07 16 11 O -0.57 -30.20 12.58 -148.98 -1.87 -32.08 16 12 C 0.05 1.96 4.57 86.30 0.39 2.35 16 13 N -0.54 -18.56 4.51 -896.37 -4.04 -22.60 16 14 C 0.05 1.35 5.23 86.32 0.45 1.80 16 15 C -0.13 -2.94 4.89 30.64 0.15 -2.79 16 16 C 0.15 3.49 0.63 -10.71 -0.01 3.48 16 17 O -0.56 -13.27 11.06 -148.98 -1.65 -14.91 16 18 C -0.10 -2.04 3.05 -10.27 -0.03 -2.07 16 19 C -0.13 -2.58 7.49 31.18 0.23 -2.35 16 20 C -0.14 -2.25 8.09 31.18 0.25 -2.00 16 21 C -0.13 -2.22 6.71 31.12 0.21 -2.01 16 22 C -0.13 -3.60 5.09 30.65 0.16 -3.45 16 23 C 0.06 1.89 5.06 86.33 0.44 2.33 16 24 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 25 H 0.35 16.69 9.04 -74.06 -0.67 16.02 16 26 H 0.07 2.72 7.98 -2.39 -0.02 2.70 16 27 H 0.02 0.99 8.12 -2.39 -0.02 0.98 16 28 H 0.08 2.03 8.01 -2.39 -0.02 2.01 16 29 H 0.03 0.85 6.84 -2.39 -0.02 0.84 16 30 H 0.09 1.72 7.60 -2.39 -0.02 1.70 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.37 8.24 5.86 -74.06 -0.43 7.81 16 33 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.08 1.76 7.04 -2.38 -0.02 1.75 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.52 7.72 -2.39 -0.02 1.50 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.95 16 41 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.03 1.00 6.85 -2.39 -0.02 0.98 16 43 H 0.05 2.09 6.24 -2.39 -0.01 2.08 16 Total: -1.00 -63.52 328.45 -2.36 -65.88 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: -0.10 Total: 34.97 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 3.01 Total: -22.70 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -3.77 Total: -76.52 kcal Atomic # 8 Polarization: -43.47 SS G_CDS: -3.52 Total: -46.99 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -63.52 -2.36 -65.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932813954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.858 kcal (2) G-P(sol) polarization free energy of solvation -63.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds