Wall clock time and date at job start Mon Mar 30 2020 01:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48505 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47248 * 300.00305 * 3 2 1 6 6 H 1.48503 * 109.46980 * 60.00046 * 3 2 1 7 7 C 1.37882 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99562 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46985 * 180.02562 * 9 7 2 11 11 C 1.42900 * 114.00303 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47489 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.47152 * 69.98156 * 12 11 10 14 14 C 1.47102 * 111.06102 * 301.15815 * 13 12 11 15 15 C 1.53096 * 109.28119 * 177.62674 * 14 13 12 16 16 O 1.43017 * 109.25832 * 56.84991 * 15 14 13 17 17 C 1.43013 * 113.73857 * 301.32783 * 16 15 14 18 18 C 1.47019 * 111.00130 * 177.54458 * 13 12 11 19 19 H 1.08994 * 109.50334 * 62.45416 * 18 13 12 20 20 C 1.53008 * 109.50421 * 302.37008 * 18 13 12 21 21 C 1.53002 * 109.46990 * 77.05762 * 20 18 13 22 22 C 1.52998 * 117.49627 * 238.64627 * 21 20 18 23 23 C 1.53000 * 117.49868 * 170.02321 * 21 20 18 24 24 H 0.96994 * 119.99458 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47617 * 60.00158 * 9 7 2 26 26 H 1.08999 * 109.47082 * 299.99664 * 9 7 2 27 27 H 1.09002 * 109.47162 * 59.99610 * 11 10 9 28 28 H 1.09007 * 109.47192 * 299.99860 * 11 10 9 29 29 H 1.09003 * 109.47097 * 309.98468 * 12 11 10 30 30 H 1.09001 * 109.47539 * 189.98083 * 12 11 10 31 31 H 1.08996 * 109.49477 * 57.68757 * 14 13 12 32 32 H 1.09003 * 109.53228 * 297.58917 * 14 13 12 33 33 H 1.09002 * 109.50942 * 296.91895 * 15 14 13 34 34 H 1.09000 * 109.54127 * 176.80333 * 15 14 13 35 35 H 1.08998 * 109.50686 * 298.73484 * 17 16 15 36 36 H 1.09004 * 109.50775 * 178.60352 * 17 16 15 37 37 H 1.08993 * 109.46698 * 197.05826 * 20 18 13 38 38 H 1.08998 * 109.46891 * 317.06285 * 20 18 13 39 39 H 1.09002 * 115.54978 * 24.35724 * 21 20 18 40 40 H 1.08999 * 117.50392 * 0.02562 * 22 21 20 41 41 H 1.09007 * 117.49716 * 145.02259 * 22 21 20 42 42 H 1.08990 * 117.50060 * 214.97911 * 23 21 20 43 43 H 1.09003 * 117.49581 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.3286 -5.9667 1.3014 14 6 3.9366 -4.6588 1.5906 15 6 4.5819 -4.6970 2.9784 16 8 5.5373 -5.7602 3.0252 17 6 4.9797 -7.0480 2.7496 18 6 4.3385 -7.0335 1.3595 19 1 5.1051 -6.8502 0.6068 20 6 3.6711 -8.3839 1.0906 21 6 3.4054 -8.5319 -0.4089 22 6 1.9571 -8.7491 -0.8516 23 6 2.9579 -9.9047 -0.9149 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 0.9452 -4.9822 -0.8913 28 1 0.9447 -4.9827 0.8887 29 1 3.3723 -5.7454 -0.7873 30 1 2.1904 -6.9293 -0.1790 31 1 3.1672 -3.8870 1.5681 32 1 4.6969 -4.4368 0.8417 33 1 3.8132 -4.8651 3.7328 34 1 5.0827 -3.7488 3.1739 35 1 4.2226 -7.2843 3.4973 36 1 5.7682 -7.8000 2.7788 37 1 4.3284 -9.1868 1.4242 38 1 2.7276 -8.4373 1.6337 39 1 4.0480 -7.9402 -1.0608 40 1 1.1934 -8.7862 -0.0747 41 1 1.6465 -8.3001 -1.7951 42 1 3.3057 -10.2159 -1.8998 43 1 2.8523 -10.7023 -0.1794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933212696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:28 Heat of formation + Delta-G solvation = -59.032169 kcal Electronic energy + Delta-G solvation = -21756.680034 eV Core-core repulsion = 18610.105048 eV Total energy + Delta-G solvation = -3146.574985 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.96087 -37.76197 -36.97437 -35.01238 -32.80422 -32.12897 -29.90594 -27.54854 -27.05843 -25.51697 -23.08901 -22.57931 -22.27699 -21.34341 -20.56581 -19.83544 -16.51987 -16.44166 -16.07588 -15.71242 -15.52063 -15.17656 -15.03141 -14.68775 -14.35787 -14.17654 -13.76709 -13.26579 -12.99442 -12.54689 -12.15131 -12.00567 -11.84449 -11.64597 -11.40369 -11.37207 -11.17086 -10.95373 -10.87501 -10.78833 -10.66210 -10.35699 -10.19208 -10.08265 -9.62784 -9.38366 -9.08674 -8.76068 -8.15525 -8.03798 -6.12860 -4.14775 3.27684 3.34582 3.40556 3.60015 3.98213 4.06429 4.33459 4.45871 4.70379 4.75704 4.91024 4.95419 5.16254 5.23916 5.24070 5.31683 5.41026 5.47400 5.54760 5.63121 5.66337 5.67227 5.74228 5.77511 5.81159 5.93590 5.95854 5.98417 6.11897 6.14097 6.24378 6.34533 6.42210 6.73291 7.09835 7.25857 7.32121 7.39816 7.44940 7.77244 8.13271 8.54439 8.98780 9.50498 10.98602 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.004710 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.165203 B = 5942.786444 C = 6975.053698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.193 3.807 10 O -0.393 6.393 11 C 0.061 3.939 12 C 0.039 3.961 13 N -0.525 5.525 14 C 0.009 3.991 15 C 0.062 3.938 16 O -0.392 6.392 17 C 0.071 3.929 18 C 0.048 3.952 19 H 0.047 0.953 20 C -0.083 4.083 21 C -0.150 4.150 22 C -0.182 4.182 23 C -0.182 4.182 24 H 0.263 0.737 25 H 0.004 0.996 26 H 0.006 0.994 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.034 0.966 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.114 -18.194 2.173 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.552 4.552 8 H 0.084 0.916 9 C 0.119 3.881 10 O -0.313 6.313 11 C -0.017 4.017 12 C -0.088 4.088 13 N -0.251 5.251 14 C -0.118 4.118 15 C -0.015 4.015 16 O -0.310 6.310 17 C -0.006 4.006 18 C -0.061 4.061 19 H 0.065 0.935 20 C -0.120 4.120 21 C -0.168 4.168 22 C -0.219 4.219 23 C -0.219 4.219 24 H 0.073 0.927 25 H 0.022 0.978 26 H 0.024 0.976 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.148 0.852 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.003 -18.095 2.576 19.238 hybrid contribution 0.293 1.082 -0.872 1.421 sum 6.296 -17.013 1.704 18.220 Atomic orbital electron populations 1.69972 1.06106 1.27036 1.50555 1.24943 0.94941 0.99408 0.95127 0.86318 0.80046 0.82722 0.77640 1.19488 1.20883 1.20814 1.21082 0.93984 0.89372 1.50799 0.91585 1.20197 0.88849 0.83675 0.95418 1.87864 1.35534 1.13347 1.94545 1.22326 0.94728 0.85193 0.99429 1.22855 0.96586 0.99946 0.89423 1.62415 1.27675 1.03941 1.31105 1.23251 1.00486 0.92532 0.95570 1.22802 0.91676 0.90104 0.96905 1.87940 1.35926 1.15760 1.91392 1.22620 0.97645 0.85713 0.94644 1.22334 0.93586 0.92413 0.97798 0.93535 1.21203 1.01605 0.95809 0.93402 1.22481 0.97853 0.99446 0.97023 1.23103 0.92717 1.02600 1.03453 1.23088 1.04270 0.92069 1.02496 0.92715 0.97846 0.97647 0.94143 0.93598 0.94819 0.87302 0.85172 0.94411 0.92660 0.88567 0.92600 0.89163 0.91029 0.90404 0.87895 0.88322 0.88609 0.89051 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -14.85 9.43 -34.44 -0.32 -15.17 16 8 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.19 5.18 5.69 36.00 0.20 5.39 16 10 O -0.39 -9.09 7.06 -35.23 -0.25 -9.34 16 11 C 0.06 1.13 5.93 37.16 0.22 1.35 16 12 C 0.04 0.60 4.34 -3.82 -0.02 0.58 16 13 N -0.53 -8.04 4.60 -226.26 -1.04 -9.08 16 14 C 0.01 0.15 4.86 -3.66 -0.02 0.13 16 15 C 0.06 0.95 7.01 37.21 0.26 1.21 16 16 O -0.39 -5.94 10.83 -35.23 -0.38 -6.32 16 17 C 0.07 0.87 6.22 37.21 0.23 1.10 16 18 C 0.05 0.61 2.20 -67.59 -0.15 0.46 16 19 H 0.05 0.65 7.85 -51.93 -0.41 0.24 16 20 C -0.08 -0.83 4.82 -26.73 -0.13 -0.96 16 21 C -0.15 -1.48 3.80 -90.62 -0.34 -1.82 16 22 C -0.18 -1.70 7.77 -26.73 -0.21 -1.91 16 23 C -0.18 -1.52 10.25 -26.73 -0.27 -1.80 16 24 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 25 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 26 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.56 7.98 -51.93 -0.41 0.14 16 30 H 0.11 1.41 2.91 -51.93 -0.15 1.26 16 31 H 0.13 2.67 5.20 -51.93 -0.27 2.40 16 32 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.60 8.03 -51.93 -0.42 0.18 16 38 H 0.08 0.81 7.87 -51.93 -0.41 0.41 16 39 H 0.10 1.12 7.51 -51.93 -0.39 0.73 16 40 H 0.10 0.91 8.03 -51.93 -0.42 0.50 16 41 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 42 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 333.62 15.07 5.03 5.03 Total: -1.00 -30.45 333.62 -9.06 -39.52 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.49 Total: -0.63 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.64 Total: -9.91 kcal Atomic # 7 Polarization: -34.71 SS G_CDS: -0.30 Total: -35.02 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.63 Total: -15.66 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.45 -9.06 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933212696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.516 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds