Wall clock time and date at job start Mon Mar 30 2020 01:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00221 * 2 1 4 4 H 1.48505 * 109.47260 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47248 * 300.00305 * 3 2 1 6 6 H 1.48503 * 109.46980 * 60.00046 * 3 2 1 7 7 C 1.37882 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99930 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99562 * 359.97438 * 7 2 1 10 10 O 1.42900 * 109.46985 * 180.02562 * 9 7 2 11 11 C 1.42900 * 114.00303 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47489 * 180.02562 * 11 10 9 13 13 N 1.46903 * 109.47152 * 69.98156 * 12 11 10 14 14 C 1.47102 * 111.06102 * 301.15815 * 13 12 11 15 15 C 1.53096 * 109.28119 * 177.62674 * 14 13 12 16 16 O 1.43017 * 109.25832 * 56.84991 * 15 14 13 17 17 C 1.43013 * 113.73857 * 301.32783 * 16 15 14 18 18 C 1.47019 * 111.00130 * 177.54458 * 13 12 11 19 19 H 1.08994 * 109.50334 * 62.45416 * 18 13 12 20 20 C 1.53008 * 109.50421 * 302.37008 * 18 13 12 21 21 C 1.53002 * 109.46990 * 77.05762 * 20 18 13 22 22 C 1.52998 * 117.49627 * 238.64627 * 21 20 18 23 23 C 1.53000 * 117.49868 * 170.02321 * 21 20 18 24 24 H 0.96994 * 119.99458 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47617 * 60.00158 * 9 7 2 26 26 H 1.08999 * 109.47082 * 299.99664 * 9 7 2 27 27 H 1.09002 * 109.47162 * 59.99610 * 11 10 9 28 28 H 1.09007 * 109.47192 * 299.99860 * 11 10 9 29 29 H 1.09003 * 109.47097 * 309.98468 * 12 11 10 30 30 H 1.09001 * 109.47539 * 189.98083 * 12 11 10 31 31 H 1.08996 * 109.49477 * 57.68757 * 14 13 12 32 32 H 1.09003 * 109.53228 * 297.58917 * 14 13 12 33 33 H 1.09002 * 109.50942 * 296.91895 * 15 14 13 34 34 H 1.09000 * 109.54127 * 176.80333 * 15 14 13 35 35 H 1.08998 * 109.50686 * 298.73484 * 17 16 15 36 36 H 1.09004 * 109.50775 * 178.60352 * 17 16 15 37 37 H 1.08993 * 109.46698 * 197.05826 * 20 18 13 38 38 H 1.08998 * 109.46891 * 317.06285 * 20 18 13 39 39 H 1.09002 * 115.54978 * 24.35724 * 21 20 18 40 40 H 1.08999 * 117.50392 * 0.02562 * 22 21 20 41 41 H 1.09007 * 117.49716 * 145.02259 * 22 21 20 42 42 H 1.08990 * 117.50060 * 214.97911 * 23 21 20 43 43 H 1.09003 * 117.49581 * 0.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5651 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0004 13 7 3.3286 -5.9667 1.3014 14 6 3.9366 -4.6588 1.5906 15 6 4.5819 -4.6970 2.9784 16 8 5.5373 -5.7602 3.0252 17 6 4.9797 -7.0480 2.7496 18 6 4.3385 -7.0335 1.3595 19 1 5.1051 -6.8502 0.6068 20 6 3.6711 -8.3839 1.0906 21 6 3.4054 -8.5319 -0.4089 22 6 1.9571 -8.7491 -0.8516 23 6 2.9579 -9.9047 -0.9149 24 1 -0.4849 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8903 26 1 0.6248 -2.5570 0.8897 27 1 0.9452 -4.9822 -0.8913 28 1 0.9447 -4.9827 0.8887 29 1 3.3723 -5.7454 -0.7873 30 1 2.1904 -6.9293 -0.1790 31 1 3.1672 -3.8870 1.5681 32 1 4.6969 -4.4368 0.8417 33 1 3.8132 -4.8651 3.7328 34 1 5.0827 -3.7488 3.1739 35 1 4.2226 -7.2843 3.4973 36 1 5.7682 -7.8000 2.7788 37 1 4.3284 -9.1868 1.4242 38 1 2.7276 -8.4373 1.6337 39 1 4.0480 -7.9402 -1.0608 40 1 1.1934 -8.7862 -0.0747 41 1 1.6465 -8.3001 -1.7951 42 1 3.3057 -10.2159 -1.8998 43 1 2.8523 -10.7023 -0.1794 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933212696.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:28 Heat of formation + Delta-G solvation = -78.994353 kcal Electronic energy + Delta-G solvation = -21757.545659 eV Core-core repulsion = 18610.105048 eV Total energy + Delta-G solvation = -3147.440610 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.09928 -38.77692 -38.56546 -36.29645 -34.89996 -33.29906 -31.38012 -29.31979 -28.30409 -26.87707 -24.58761 -23.94548 -23.56954 -22.56320 -21.41623 -21.00518 -18.62192 -17.79368 -17.50278 -17.11684 -16.63487 -16.42391 -16.39669 -16.25919 -15.69211 -15.42311 -14.96413 -14.77330 -14.64302 -13.73687 -13.44901 -13.29828 -13.22710 -13.03049 -12.74757 -12.72092 -12.54488 -12.44363 -12.31564 -12.24373 -11.98432 -11.80728 -11.52684 -11.27239 -11.03885 -10.87235 -10.59337 -10.48205 -10.07713 -9.34522 -8.32884 -6.44843 1.39135 1.39871 1.54495 2.33397 2.75736 2.91312 2.94812 3.01303 3.20563 3.60932 3.83141 3.97959 4.03986 4.08585 4.19676 4.25770 4.26419 4.36420 4.40402 4.48669 4.53742 4.68371 4.73716 4.75788 4.80265 4.81043 4.88874 4.92288 4.94916 5.03336 5.11975 5.15714 5.18850 5.29019 5.29318 5.40892 5.54260 5.95553 5.99335 6.11028 6.22003 6.51887 6.80873 7.27134 8.79590 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.021514 B = 0.004710 C = 0.004013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.165203 B = 5942.786444 C = 6975.053698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.060 0.940 9 C 0.209 3.791 10 O -0.399 6.399 11 C 0.053 3.947 12 C 0.051 3.949 13 N -0.527 5.527 14 C 0.015 3.985 15 C 0.069 3.931 16 O -0.404 6.404 17 C 0.066 3.934 18 C 0.048 3.952 19 H 0.034 0.966 20 C -0.074 4.074 21 C -0.164 4.164 22 C -0.194 4.194 23 C -0.163 4.163 24 H 0.270 0.730 25 H -0.017 1.017 26 H -0.014 1.014 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.021 0.979 30 H 0.140 0.860 31 H 0.097 0.903 32 H 0.015 0.985 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.015 -19.497 2.628 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.190 4.190 3 Si 0.803 3.197 4 H -0.189 1.189 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.581 4.581 8 H 0.078 0.922 9 C 0.134 3.866 10 O -0.319 6.319 11 C -0.024 4.024 12 C -0.076 4.076 13 N -0.253 5.253 14 C -0.113 4.113 15 C -0.008 4.008 16 O -0.323 6.323 17 C -0.011 4.011 18 C -0.061 4.061 19 H 0.052 0.948 20 C -0.111 4.111 21 C -0.182 4.182 22 C -0.231 4.231 23 C -0.199 4.199 24 H 0.079 0.921 25 H 0.001 0.999 26 H 0.003 0.997 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.039 0.961 30 H 0.157 0.843 31 H 0.115 0.885 32 H 0.033 0.967 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.138 0.862 37 H 0.115 0.885 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.117 0.883 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.907 -19.431 3.030 20.843 hybrid contribution -0.007 1.366 -1.031 1.711 sum 6.899 -18.065 1.999 19.441 Atomic orbital electron populations 1.70074 1.07723 1.28511 1.50614 1.25912 0.95886 1.03240 0.93978 0.85185 0.78675 0.77599 0.78254 1.18929 1.19804 1.19612 1.21372 0.93934 0.90775 1.52016 0.92157 1.19791 0.88680 0.84800 0.93348 1.87884 1.35083 1.14337 1.94577 1.22626 0.96120 0.83939 0.99717 1.22870 0.95499 0.99922 0.89336 1.62454 1.28515 1.03682 1.30661 1.23023 0.98836 0.92908 0.96525 1.22692 0.91874 0.90828 0.95429 1.87924 1.36222 1.16715 1.91413 1.22900 0.98924 0.85009 0.94237 1.22457 0.92818 0.92773 0.98026 0.94796 1.21170 1.01861 0.94623 0.93492 1.22438 0.97921 1.01027 0.96831 1.23171 0.92623 1.03790 1.03505 1.23132 1.02246 0.91436 1.03119 0.92091 0.99948 0.99654 0.93386 0.93684 0.96115 0.84307 0.88542 0.96664 0.92022 0.88200 0.91674 0.86201 0.88471 0.90350 0.89198 0.88008 0.88907 0.88330 0.87446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 2 C 0.01 0.48 5.46 84.66 0.46 0.95 16 3 Si 0.98 44.55 29.54 68.60 2.03 46.58 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.54 -32.28 9.43 25.60 0.24 -32.04 16 8 H 0.06 3.56 7.81 -2.91 -0.02 3.54 16 9 C 0.21 11.74 5.69 71.23 0.41 12.14 16 10 O -0.40 -19.30 7.06 -148.98 -1.05 -20.36 16 11 C 0.05 2.02 5.93 71.98 0.43 2.45 16 12 C 0.05 1.57 4.34 86.30 0.37 1.94 16 13 N -0.53 -16.07 4.60 -869.75 -4.00 -20.07 16 14 C 0.02 0.54 4.86 86.30 0.42 0.96 16 15 C 0.07 2.10 7.01 72.01 0.50 2.60 16 16 O -0.40 -11.76 10.83 -148.98 -1.61 -13.37 16 17 C 0.07 1.46 6.22 72.01 0.45 1.91 16 18 C 0.05 1.15 2.20 44.93 0.10 1.25 16 19 H 0.03 0.92 7.85 -2.39 -0.02 0.90 16 20 C -0.07 -1.29 4.82 30.60 0.15 -1.14 16 21 C -0.16 -2.91 3.80 -10.79 -0.04 -2.95 16 22 C -0.19 -3.27 7.77 30.59 0.24 -3.04 16 23 C -0.16 -2.26 10.25 30.60 0.31 -1.94 16 24 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 25 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 26 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 28 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 29 H 0.02 0.70 7.98 -2.39 -0.02 0.68 16 30 H 0.14 3.48 2.91 -2.39 -0.01 3.47 16 31 H 0.10 4.16 5.20 -2.39 -0.01 4.14 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 2.91 8.14 -2.39 -0.02 2.90 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.12 1.97 8.14 -2.38 -0.02 1.95 16 37 H 0.10 1.24 8.03 -2.39 -0.02 1.22 16 38 H 0.08 1.41 7.87 -2.39 -0.02 1.39 16 39 H 0.09 1.86 7.51 -2.39 -0.02 1.85 16 40 H 0.10 1.67 8.03 -2.39 -0.02 1.65 16 41 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -66.58 333.62 0.65 -65.93 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.96 Total: 13.89 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 4.04 Total: -16.91 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -3.71 Total: -75.76 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -2.66 Total: -33.73 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.58 0.65 -65.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933212696.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.061 kcal (2) G-P(sol) polarization free energy of solvation -66.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds