Wall clock time and date at job start Mon Mar 30 2020 00:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52994 * 109.46950 * 275.02052 * 3 2 1 5 5 N 1.46904 * 112.85114 * 303.34105 * 4 3 2 6 6 C 1.46893 * 111.00311 * 291.87339 * 5 4 3 7 7 C 1.50698 * 109.47252 * 178.13635 * 6 5 4 8 8 C 1.38636 * 119.74863 * 90.00349 * 7 6 5 9 9 C 1.37613 * 120.24966 * 179.97438 * 8 7 6 10 10 C 1.40716 * 119.74528 * 0.27041 * 9 8 7 11 11 C 1.41401 * 120.24492 * 179.70095 * 10 9 8 12 12 H 1.07993 * 119.99911 * 150.07314 * 11 10 9 13 13 C 1.39948 * 119.99916 * 330.07418 * 11 10 9 14 14 N 1.30821 * 119.99869 * 162.76566 * 13 11 10 15 15 Si 1.86800 * 120.00059 * 342.76935 * 13 11 10 16 16 H 1.48507 * 109.46842 * 95.23176 * 15 13 11 17 17 H 1.48499 * 109.47156 * 215.23102 * 15 13 11 18 18 H 1.48498 * 109.47204 * 335.23321 * 15 13 11 19 19 C 1.40718 * 119.50827 * 359.47712 * 10 9 8 20 20 C 1.37616 * 119.74449 * 0.50547 * 19 10 9 21 21 C 1.53780 * 113.69383 * 74.61258 * 4 3 2 22 22 C 1.53783 * 87.07909 * 89.12695 * 21 4 3 23 23 C 1.53781 * 113.61285 * 172.15340 * 4 3 2 24 24 H 4.44642 * 5.63321 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.46495 * 155.02230 * 3 2 1 26 26 H 1.08997 * 109.46903 * 35.02175 * 3 2 1 27 27 H 1.00903 * 110.99456 * 55.82755 * 5 4 3 28 28 H 1.09009 * 109.47207 * 58.13899 * 6 5 4 29 29 H 1.08996 * 109.47417 * 298.14014 * 6 5 4 30 30 H 1.07997 * 119.87333 * 359.95158 * 8 7 6 31 31 H 1.08002 * 120.12742 * 179.97438 * 9 8 7 32 32 H 0.96999 * 120.00120 * 179.97438 * 14 13 11 33 33 H 1.08004 * 120.12413 * 180.25438 * 19 10 9 34 34 H 1.08004 * 119.87087 * 179.74987 * 20 19 10 35 35 H 1.09000 * 113.61638 * 203.67069 * 21 4 3 36 36 H 1.09001 * 113.61222 * 334.58160 * 21 4 3 37 37 H 1.09000 * 113.61772 * 270.88406 * 22 21 4 38 38 H 1.08997 * 113.61826 * 139.98418 * 22 21 4 39 39 H 1.09001 * 113.62076 * 25.34253 * 23 4 3 40 40 H 1.09001 * 113.61704 * 156.25082 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.1253 1.4369 5 7 2.6442 0.9323 2.3187 6 6 3.2030 2.2402 1.9515 7 6 2.6214 3.3041 2.8464 8 6 3.2563 3.6246 4.0364 9 6 2.7344 4.5948 4.8611 10 6 1.5488 5.2584 4.4952 11 6 0.9999 6.2526 5.3377 12 1 0.4337 7.0681 4.9127 13 6 1.1905 6.1798 6.7222 14 7 0.9911 7.2370 7.4664 15 14 1.7296 4.5729 7.5075 16 1 3.2062 4.5705 7.6661 17 1 1.0885 4.4335 8.8397 18 1 1.3229 3.4375 6.6411 19 6 0.9159 4.9286 3.2824 20 6 1.4559 3.9554 2.4731 21 6 3.0104 -1.5398 2.0226 22 6 4.4044 -1.8372 1.4454 23 6 4.6775 -0.3264 1.5352 24 1 -1.0499 -0.0002 0.0000 25 1 3.0088 0.9324 -0.4340 26 1 3.0097 -0.8408 -0.5898 27 1 1.6355 0.9543 2.3090 28 1 2.9549 2.4629 0.9137 29 1 4.2863 2.2186 2.0695 30 1 4.1636 3.1106 4.3175 31 1 3.2304 4.8427 5.7879 32 1 1.1228 7.1865 8.4261 33 1 0.0077 5.4346 2.9898 34 1 0.9696 3.6978 1.5437 35 1 2.9755 -1.5599 3.1118 36 1 2.2134 -2.1232 1.5616 37 1 4.3822 -2.2169 0.4239 38 1 5.0324 -2.4344 2.1064 39 1 5.2264 0.0696 0.6808 40 1 5.0983 -0.0149 2.4912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933294391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:05 Heat of formation + Delta-G solvation = 82.803590 kcal Electronic energy + Delta-G solvation = -19741.607463 eV Core-core repulsion = 16908.491858 eV Total energy + Delta-G solvation = -2833.115605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.87641 -37.85513 -34.55100 -33.69266 -32.97387 -30.42209 -29.67146 -28.51094 -26.46976 -25.66415 -23.50862 -22.42312 -21.41026 -19.96162 -19.03983 -17.63074 -17.38993 -16.32902 -15.60881 -15.24242 -15.05764 -14.43842 -13.93429 -13.85539 -13.65635 -13.49688 -13.23987 -12.76045 -12.30444 -12.27265 -11.96846 -11.81109 -11.49300 -11.24192 -11.05032 -10.89087 -10.75699 -10.47603 -10.29922 -10.23363 -10.16509 -10.02492 -9.72343 -9.51323 -9.10705 -8.14726 -7.66945 -7.47550 -6.91944 -4.45591 2.58418 2.73255 2.76332 2.81233 3.14667 3.25371 3.37238 4.02573 4.20057 4.37384 4.57125 4.63717 4.70089 4.84245 4.89521 5.30148 5.40653 5.47172 5.51501 5.66524 5.77003 5.79894 5.82469 5.84439 5.92115 5.99621 6.12192 6.17669 6.20268 6.31252 6.37656 6.59535 6.87978 6.93344 7.21410 7.37080 7.46485 7.56852 7.61340 7.72526 7.87473 7.92568 8.16486 8.38694 8.69294 8.83668 10.10605 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.004513 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.358046 B = 6203.262536 C = 6677.496024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.024 4.024 4 C 0.087 3.913 5 N -0.664 5.664 6 C 0.123 3.877 7 C -0.215 4.215 8 C -0.053 4.053 9 C -0.240 4.240 10 C 0.095 3.905 11 C -0.449 4.449 12 H 0.089 0.911 13 C 0.084 3.916 14 N -0.812 5.812 15 Si 0.912 3.088 16 H -0.271 1.271 17 H -0.293 1.293 18 H -0.243 1.243 19 C -0.210 4.210 20 C -0.075 4.075 21 C -0.121 4.121 22 C -0.143 4.143 23 C -0.121 4.121 24 H 0.216 0.784 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.342 0.658 28 H 0.021 0.979 29 H 0.065 0.935 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.284 0.716 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 -15.173 -10.706 19.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.184 4.184 3 C -0.063 4.063 4 C -0.005 4.005 5 N -0.294 5.294 6 C -0.005 4.005 7 C -0.216 4.216 8 C -0.072 4.072 9 C -0.259 4.259 10 C 0.092 3.908 11 C -0.478 4.478 12 H 0.107 0.893 13 C -0.134 4.134 14 N -0.436 5.436 15 Si 0.739 3.261 16 H -0.197 1.197 17 H -0.220 1.220 18 H -0.166 1.166 19 C -0.230 4.230 20 C -0.094 4.094 21 C -0.159 4.159 22 C -0.181 4.181 23 C -0.159 4.159 24 H 0.233 0.767 25 H 0.106 0.894 26 H 0.106 0.894 27 H 0.161 0.839 28 H 0.039 0.961 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.116 0.884 32 H 0.095 0.905 33 H 0.116 0.884 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.757 -15.099 -9.969 18.708 hybrid contribution -0.580 -0.235 -0.332 0.708 sum 4.177 -15.333 -10.300 18.938 Atomic orbital electron populations 1.24893 0.95935 1.01167 1.00358 1.22900 0.94313 1.00412 1.00755 1.19154 0.85336 1.03284 0.98515 1.22304 0.95810 0.93149 0.89258 1.61021 1.13263 1.04007 1.51088 1.20534 0.98352 0.86611 0.94977 1.18942 1.00383 1.03432 0.98858 1.20411 0.97702 0.95575 0.93535 1.21021 0.99176 1.04214 1.01515 1.17741 0.90177 0.90457 0.92381 1.19513 1.29518 1.07852 0.90915 0.89290 1.26153 0.91608 0.97952 0.97708 1.69692 1.36641 1.29613 1.07655 0.86299 0.78796 0.83438 0.77558 1.19747 1.22019 1.16563 1.20971 1.01211 1.02392 0.98395 1.20481 0.94978 0.96442 0.97456 1.22982 0.96696 0.94695 1.01552 1.22777 0.97680 0.96699 1.00960 1.22983 0.94461 0.95719 1.02713 0.76712 0.89411 0.89362 0.83926 0.96125 0.91688 0.88914 0.88362 0.90517 0.88393 0.89401 0.89091 0.91993 0.90503 0.91267 0.91736 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.42 19.25 29.55 0.57 -1.85 16 2 C -0.18 -2.30 12.03 -37.12 -0.45 -2.75 16 3 C -0.02 -0.27 4.84 -29.52 -0.14 -0.41 16 4 C 0.09 1.03 0.70 -130.79 -0.09 0.94 16 5 N -0.66 -10.07 6.32 -100.40 -0.63 -10.70 16 6 C 0.12 2.01 5.43 -4.98 -0.03 1.98 16 7 C -0.21 -4.36 5.40 -104.33 -0.56 -4.92 16 8 C -0.05 -1.17 9.67 -39.66 -0.38 -1.56 16 9 C -0.24 -5.89 7.13 -38.87 -0.28 -6.17 16 10 C 0.10 2.46 5.11 -106.82 -0.55 1.92 16 11 C -0.45 -12.38 9.58 -37.74 -0.36 -12.74 16 12 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 13 C 0.08 2.25 5.42 -17.34 -0.09 2.16 16 14 N -0.81 -22.01 13.93 55.55 0.77 -21.23 16 15 Si 0.91 21.39 24.49 -169.99 -4.16 17.23 16 16 H -0.27 -6.18 6.71 56.52 0.38 -5.81 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.24 -5.88 6.81 56.52 0.39 -5.50 16 19 C -0.21 -4.96 9.80 -38.87 -0.38 -5.34 16 20 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 21 C -0.12 -1.33 7.36 -25.92 -0.19 -1.52 16 22 C -0.14 -1.30 7.73 -25.92 -0.20 -1.50 16 23 C -0.12 -1.27 6.44 -25.92 -0.17 -1.44 16 24 H 0.22 1.85 7.80 -54.09 -0.42 1.43 16 25 H 0.09 0.98 7.04 -51.93 -0.37 0.61 16 26 H 0.09 0.81 7.31 -51.93 -0.38 0.43 16 27 H 0.34 5.57 7.75 -39.29 -0.30 5.27 16 28 H 0.02 0.32 6.76 -51.92 -0.35 -0.03 16 29 H 0.06 1.02 7.42 -51.93 -0.39 0.63 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.10 2.42 4.67 -52.49 -0.25 2.18 16 32 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 33 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 34 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 35 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.66 7.96 -51.93 -0.41 0.25 16 37 H 0.08 0.60 7.60 -51.93 -0.39 0.21 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 40 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 328.30 15.07 4.95 4.95 Total: -1.00 -27.98 328.30 -8.58 -36.56 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.82 Total: 8.36 kcal Atomic # 6 Polarization: -31.48 SS G_CDS: -3.69 Total: -35.16 kcal Atomic # 7 Polarization: -32.07 SS G_CDS: 0.14 Total: -31.93 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.16 Total: 17.23 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.98 -8.58 -36.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933294391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.366 kcal (2) G-P(sol) polarization free energy of solvation -27.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds