Wall clock time and date at job start Mon Mar 30 2020 00:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52994 * 109.46950 * 275.02052 * 3 2 1 5 5 N 1.46904 * 112.85114 * 303.34105 * 4 3 2 6 6 C 1.46893 * 111.00311 * 291.87339 * 5 4 3 7 7 C 1.50698 * 109.47252 * 178.13635 * 6 5 4 8 8 C 1.38636 * 119.74863 * 90.00349 * 7 6 5 9 9 C 1.37613 * 120.24966 * 179.97438 * 8 7 6 10 10 C 1.40716 * 119.74528 * 0.27041 * 9 8 7 11 11 C 1.41401 * 120.24492 * 179.70095 * 10 9 8 12 12 H 1.07993 * 119.99911 * 150.07314 * 11 10 9 13 13 C 1.39948 * 119.99916 * 330.07418 * 11 10 9 14 14 N 1.30821 * 119.99869 * 162.76566 * 13 11 10 15 15 Si 1.86800 * 120.00059 * 342.76935 * 13 11 10 16 16 H 1.48507 * 109.46842 * 95.23176 * 15 13 11 17 17 H 1.48499 * 109.47156 * 215.23102 * 15 13 11 18 18 H 1.48498 * 109.47204 * 335.23321 * 15 13 11 19 19 C 1.40718 * 119.50827 * 359.47712 * 10 9 8 20 20 C 1.37616 * 119.74449 * 0.50547 * 19 10 9 21 21 C 1.53780 * 113.69383 * 74.61258 * 4 3 2 22 22 C 1.53783 * 87.07909 * 89.12695 * 21 4 3 23 23 C 1.53781 * 113.61285 * 172.15340 * 4 3 2 24 24 H 4.44642 * 5.63321 * 180.02562 * 4 1 2 25 25 H 1.08998 * 109.46495 * 155.02230 * 3 2 1 26 26 H 1.08997 * 109.46903 * 35.02175 * 3 2 1 27 27 H 1.00903 * 110.99456 * 55.82755 * 5 4 3 28 28 H 1.09009 * 109.47207 * 58.13899 * 6 5 4 29 29 H 1.08996 * 109.47417 * 298.14014 * 6 5 4 30 30 H 1.07997 * 119.87333 * 359.95158 * 8 7 6 31 31 H 1.08002 * 120.12742 * 179.97438 * 9 8 7 32 32 H 0.96999 * 120.00120 * 179.97438 * 14 13 11 33 33 H 1.08004 * 120.12413 * 180.25438 * 19 10 9 34 34 H 1.08004 * 119.87087 * 179.74987 * 20 19 10 35 35 H 1.09000 * 113.61638 * 203.67069 * 21 4 3 36 36 H 1.09001 * 113.61222 * 334.58160 * 21 4 3 37 37 H 1.09000 * 113.61772 * 270.88406 * 22 21 4 38 38 H 1.08997 * 113.61826 * 139.98418 * 22 21 4 39 39 H 1.09001 * 113.62076 * 25.34253 * 23 4 3 40 40 H 1.09001 * 113.61704 * 156.25082 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1560 -0.1253 1.4369 5 7 2.6442 0.9323 2.3187 6 6 3.2030 2.2402 1.9515 7 6 2.6214 3.3041 2.8464 8 6 3.2563 3.6246 4.0364 9 6 2.7344 4.5948 4.8611 10 6 1.5488 5.2584 4.4952 11 6 0.9999 6.2526 5.3377 12 1 0.4337 7.0681 4.9127 13 6 1.1905 6.1798 6.7222 14 7 0.9911 7.2370 7.4664 15 14 1.7296 4.5729 7.5075 16 1 3.2062 4.5705 7.6661 17 1 1.0885 4.4335 8.8397 18 1 1.3229 3.4375 6.6411 19 6 0.9159 4.9286 3.2824 20 6 1.4559 3.9554 2.4731 21 6 3.0104 -1.5398 2.0226 22 6 4.4044 -1.8372 1.4454 23 6 4.6775 -0.3264 1.5352 24 1 -1.0499 -0.0002 0.0000 25 1 3.0088 0.9324 -0.4340 26 1 3.0097 -0.8408 -0.5898 27 1 1.6355 0.9543 2.3090 28 1 2.9549 2.4629 0.9137 29 1 4.2863 2.2186 2.0695 30 1 4.1636 3.1106 4.3175 31 1 3.2304 4.8427 5.7879 32 1 1.1228 7.1865 8.4261 33 1 0.0077 5.4346 2.9898 34 1 0.9696 3.6978 1.5437 35 1 2.9755 -1.5599 3.1118 36 1 2.2134 -2.1232 1.5616 37 1 4.3822 -2.2169 0.4239 38 1 5.0324 -2.4344 2.1064 39 1 5.2264 0.0696 0.6808 40 1 5.0983 -0.0149 2.4912 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933294391.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:55:04 Heat of formation + Delta-G solvation = 67.597851 kcal Electronic energy + Delta-G solvation = -19742.266833 eV Core-core repulsion = 16908.491858 eV Total energy + Delta-G solvation = -2833.774976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.81351 -39.60561 -36.07633 -34.96320 -34.29859 -32.05809 -31.49526 -29.48604 -27.96032 -26.61056 -24.89263 -23.63316 -23.13496 -21.72249 -19.87622 -19.35616 -18.50133 -17.63733 -17.14538 -16.39613 -16.15010 -15.78985 -15.63781 -15.25754 -15.08847 -14.63839 -14.53534 -14.09119 -14.05115 -13.76558 -13.29525 -13.11659 -12.86173 -12.63370 -12.53811 -12.28576 -12.08897 -11.81746 -11.74966 -11.46699 -11.35894 -11.13276 -11.07642 -10.98232 -10.89326 -9.49303 -9.45153 -9.17467 -8.90321 -6.49819 0.76276 0.88290 1.25279 1.39195 1.48359 1.86815 1.92556 2.11957 2.56670 3.32587 3.42410 3.64308 3.75139 3.89533 4.00073 4.04411 4.20626 4.26255 4.43180 4.50626 4.58042 4.64846 4.73949 4.76478 4.88357 4.95867 5.00260 5.06032 5.09206 5.10163 5.14910 5.19289 5.33637 5.43622 5.56611 5.62487 5.76640 5.90920 6.06778 6.24768 6.28807 6.42582 6.50898 6.72707 6.75024 6.84549 8.18659 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.004513 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.358046 B = 6203.262536 C = 6677.496024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.209 4.209 3 C -0.022 4.022 4 C 0.083 3.917 5 N -0.673 5.673 6 C 0.130 3.870 7 C -0.190 4.190 8 C -0.062 4.062 9 C -0.250 4.250 10 C 0.073 3.927 11 C -0.489 4.489 12 H 0.054 0.946 13 C 0.049 3.951 14 N -0.853 5.853 15 Si 0.967 3.033 16 H -0.259 1.259 17 H -0.278 1.278 18 H -0.256 1.256 19 C -0.222 4.222 20 C -0.074 4.074 21 C -0.124 4.124 22 C -0.130 4.130 23 C -0.121 4.121 24 H 0.237 0.763 25 H 0.089 0.911 26 H 0.110 0.890 27 H 0.334 0.666 28 H 0.033 0.967 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.094 0.906 32 H 0.293 0.707 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -18.289 -12.477 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.210 4.210 3 C -0.060 4.060 4 C -0.009 4.009 5 N -0.303 5.303 6 C 0.002 3.998 7 C -0.192 4.192 8 C -0.080 4.080 9 C -0.270 4.270 10 C 0.070 3.930 11 C -0.519 4.519 12 H 0.073 0.927 13 C -0.165 4.165 14 N -0.480 5.480 15 Si 0.791 3.209 16 H -0.185 1.185 17 H -0.205 1.205 18 H -0.180 1.180 19 C -0.241 4.241 20 C -0.092 4.092 21 C -0.162 4.162 22 C -0.167 4.167 23 C -0.159 4.159 24 H 0.253 0.747 25 H 0.107 0.893 26 H 0.128 0.872 27 H 0.152 0.848 28 H 0.051 0.949 29 H 0.096 0.904 30 H 0.137 0.863 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.330 -18.218 -11.748 22.583 hybrid contribution -1.053 0.593 -0.028 1.209 sum 5.277 -17.626 -11.776 21.844 Atomic orbital electron populations 1.25609 0.96907 1.00664 0.99742 1.23407 0.95206 1.00982 1.01361 1.19186 0.84618 1.04245 0.97955 1.22467 0.96750 0.92273 0.89379 1.60968 1.12729 1.03939 1.52648 1.20469 0.98847 0.86076 0.94449 1.19491 0.98882 1.02635 0.98144 1.20749 0.98668 0.95008 0.93615 1.21131 0.98868 1.04915 1.02039 1.17872 0.91051 0.90878 0.93161 1.19496 1.31669 1.08586 0.92144 0.92733 1.26768 0.91632 1.00444 0.97646 1.69716 1.38895 1.31029 1.08355 0.85474 0.79107 0.79381 0.76987 1.18468 1.20460 1.17989 1.21166 1.01533 1.03192 0.98257 1.20786 0.95187 0.95224 0.98038 1.22967 0.98174 0.94266 1.00769 1.22754 0.96054 0.95878 1.02038 1.22983 0.93297 0.96868 1.02711 0.74694 0.89326 0.87240 0.84831 0.94868 0.90354 0.86308 0.88831 0.89660 0.88356 0.86514 0.90514 0.91874 0.88655 0.90477 0.90276 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.46 19.25 74.32 1.43 -3.03 16 2 C -0.21 -4.66 12.03 31.13 0.37 -4.29 16 3 C -0.02 -0.40 4.84 28.79 0.14 -0.26 16 4 C 0.08 1.69 0.70 4.05 0.00 1.69 16 5 N -0.67 -18.36 6.32 -471.55 -2.98 -21.34 16 6 C 0.13 3.75 5.43 85.56 0.46 4.21 16 7 C -0.19 -7.18 5.40 -19.68 -0.11 -7.29 16 8 C -0.06 -2.57 9.67 22.22 0.21 -2.36 16 9 C -0.25 -12.17 7.13 22.73 0.16 -12.01 16 10 C 0.07 3.84 5.11 -21.29 -0.11 3.73 16 11 C -0.49 -28.41 9.58 23.46 0.22 -28.19 16 12 H 0.05 3.40 8.06 -2.91 -0.02 3.37 16 13 C 0.05 2.72 5.42 85.26 0.46 3.18 16 14 N -0.85 -48.20 13.93 21.83 0.30 -47.89 16 15 Si 0.97 44.70 24.49 68.60 1.68 46.38 16 16 H -0.26 -11.35 6.71 99.48 0.67 -10.68 16 17 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.26 -12.24 6.81 99.48 0.68 -11.56 16 19 C -0.22 -10.51 9.80 22.73 0.22 -10.29 16 20 C -0.07 -2.96 9.67 22.22 0.21 -2.74 16 21 C -0.12 -2.36 7.36 31.12 0.23 -2.13 16 22 C -0.13 -1.85 7.73 31.12 0.24 -1.61 16 23 C -0.12 -2.09 6.44 31.12 0.20 -1.89 16 24 H 0.24 3.48 7.80 -4.42 -0.03 3.45 16 25 H 0.09 1.63 7.04 -2.39 -0.02 1.62 16 26 H 0.11 1.55 7.31 -2.39 -0.02 1.54 16 27 H 0.33 9.99 7.75 -89.69 -0.70 9.30 16 28 H 0.03 0.90 6.76 -2.38 -0.02 0.89 16 29 H 0.08 2.11 7.42 -2.39 -0.02 2.10 16 30 H 0.12 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.09 4.58 4.67 -2.91 -0.01 4.57 16 32 H 0.29 14.86 8.30 -92.71 -0.77 14.09 16 33 H 0.10 4.53 8.06 -2.91 -0.02 4.50 16 34 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 35 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.06 1.18 7.96 -2.39 -0.02 1.16 16 37 H 0.10 1.04 7.60 -2.39 -0.02 1.03 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.08 1.15 8.10 -2.39 -0.02 1.13 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -62.04 328.30 3.64 -58.41 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.26 Total: 27.71 kcal Atomic # 6 Polarization: -67.64 SS G_CDS: 4.37 Total: -63.27 kcal Atomic # 7 Polarization: -66.55 SS G_CDS: -2.67 Total: -69.23 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.68 Total: 46.38 kcal Total: -62.04 3.64 -58.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933294391.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.003 kcal (2) G-P(sol) polarization free energy of solvation -62.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds