Wall clock time and date at job start Mon Mar 30 2020 01:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00210 * 2 1 4 4 H 1.48497 * 109.47446 * 240.00430 * 3 2 1 5 5 H 1.48502 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46876 * 120.00225 * 3 2 1 7 7 C 1.37880 * 119.99656 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47170 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47410 * 180.29356 * 10 9 7 12 12 C 1.47019 * 110.99548 * 66.68203 * 11 10 9 13 13 C 1.53096 * 109.25355 * 177.60752 * 12 11 10 14 14 O 1.43017 * 109.26034 * 56.85080 * 13 12 11 15 15 C 1.43019 * 113.73681 * 301.32887 * 14 13 12 16 16 C 1.47012 * 110.99843 * 303.05415 * 11 10 9 17 17 H 1.08989 * 109.50892 * 62.45496 * 16 11 10 18 18 C 1.53003 * 109.50277 * 302.32083 * 16 11 10 19 19 C 1.52998 * 109.47230 * 175.05211 * 18 16 11 20 20 H 1.09004 * 110.27602 * 56.43838 * 19 18 16 21 21 C 1.54946 * 110.31117 * 178.53179 * 19 18 16 22 22 C 1.55413 * 100.89293 * 155.28830 * 21 19 18 23 23 C 1.54382 * 102.31111 * 325.99130 * 22 21 19 24 24 O 1.43238 * 107.58812 * 21.28396 * 23 22 21 25 25 H 0.96999 * 119.99834 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47013 * 60.00426 * 9 7 2 27 27 H 1.08995 * 109.47434 * 300.00086 * 9 7 2 28 28 H 1.08994 * 109.47219 * 60.29287 * 10 9 7 29 29 H 1.09006 * 109.47453 * 300.29622 * 10 9 7 30 30 H 1.08996 * 109.50977 * 297.54024 * 12 11 10 31 31 H 1.09000 * 109.50792 * 57.67746 * 12 11 10 32 32 H 1.08999 * 109.50821 * 176.78391 * 13 12 11 33 33 H 1.09004 * 109.51157 * 296.91218 * 13 12 11 34 34 H 1.09000 * 109.50608 * 178.60089 * 15 14 13 35 35 H 1.08996 * 109.50533 * 298.73124 * 15 14 13 36 36 H 1.09004 * 109.47301 * 295.04978 * 18 16 11 37 37 H 1.09001 * 109.47021 * 55.05332 * 18 16 11 38 38 H 1.09003 * 111.12468 * 273.27588 * 21 19 18 39 39 H 1.08990 * 111.12610 * 37.44166 * 21 19 18 40 40 H 1.08997 * 110.88425 * 207.75560 * 22 21 19 41 41 H 1.08998 * 110.93623 * 84.24569 * 22 21 19 42 42 H 1.09005 * 109.83423 * 261.77470 * 23 22 21 43 43 H 1.08999 * 109.91072 * 140.83917 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0076 12 6 0.7817 -5.1146 -1.2716 13 6 0.0809 -6.4757 -1.2604 14 8 -0.7816 -6.5529 -0.1221 15 6 -0.1044 -6.3822 1.1259 16 6 0.5945 -5.0201 1.1389 17 1 -0.1508 -4.2279 1.0693 18 6 1.3867 -4.8648 2.4386 19 6 0.4202 -4.8305 3.6241 20 1 -0.2014 -5.7259 3.6308 21 6 1.2051 -4.7106 4.9547 22 6 0.1323 -4.0583 5.8707 23 6 -0.6354 -3.1519 4.8846 24 8 -0.4015 -3.6537 3.5635 25 1 -0.4850 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8683 -3.6074 0.8920 29 1 2.8754 -3.6015 -0.8879 30 1 0.0393 -4.3239 -1.3796 31 1 1.4827 -5.0731 -2.1052 32 1 -0.5072 -6.5898 -2.1710 33 1 0.8267 -7.2688 -1.2064 34 1 -0.8265 -6.4285 1.9411 35 1 0.6360 -7.1725 1.2494 36 1 2.0695 -5.7071 2.5508 37 1 1.9570 -3.9364 2.4078 38 1 1.4981 -5.6920 5.3277 39 1 2.0723 -4.0602 4.8419 40 1 0.6008 -3.4666 6.6571 41 1 -0.5274 -4.8140 6.2969 42 1 -0.2692 -2.1281 4.9614 43 1 -1.7020 -3.1807 5.1075 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933670718.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:42 Heat of formation + Delta-G solvation = -119.077688 kcal Electronic energy + Delta-G solvation = -22281.044651 eV Core-core repulsion = 19131.865897 eV Total energy + Delta-G solvation = -3149.178754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14333 -40.01546 -37.45837 -35.10144 -34.26108 -32.97588 -31.71958 -30.52391 -28.31968 -26.96585 -25.51426 -24.13900 -23.18645 -22.49784 -21.87870 -20.16266 -18.65487 -17.99538 -17.32248 -17.20055 -16.79105 -16.58682 -16.06338 -15.86133 -15.54247 -15.27840 -14.88642 -14.63734 -14.35084 -14.13430 -13.79533 -13.30866 -13.26885 -12.91395 -12.80359 -12.64086 -12.58315 -12.55421 -12.32528 -12.08635 -11.90151 -11.71229 -11.57688 -11.53923 -11.36912 -11.13370 -10.59761 -10.53009 -10.34591 -9.19891 -8.21177 -6.34384 1.34505 1.38485 1.46279 2.36913 2.85466 2.95019 3.00341 3.10599 3.62707 3.77971 3.88164 4.00833 4.08847 4.12796 4.21397 4.24751 4.32860 4.36772 4.43571 4.57314 4.60360 4.69258 4.73903 4.76447 4.83621 4.86406 4.89999 4.92918 4.97032 4.99822 5.04356 5.18885 5.26715 5.34039 5.46732 5.57678 5.72864 5.96904 6.11211 6.20908 6.25362 6.29066 6.83605 7.34622 8.89647 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.012452 B = 0.007619 C = 0.005276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.148482 B = 3673.955334 C = 5305.411562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.001 4.001 3 Si 0.965 3.035 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.008 3.992 10 C 0.069 3.931 11 N -0.523 5.523 12 C 0.012 3.988 13 C 0.071 3.929 14 O -0.408 6.408 15 C 0.075 3.925 16 C 0.051 3.949 17 H 0.015 0.985 18 C -0.103 4.103 19 C 0.073 3.927 20 H 0.086 0.914 21 C -0.145 4.145 22 C -0.143 4.143 23 C 0.038 3.962 24 O -0.413 6.413 25 H 0.261 0.739 26 H -0.022 1.022 27 H -0.006 1.006 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.009 0.991 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.106 0.894 37 H 0.051 0.949 38 H 0.114 0.886 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 -14.552 8.907 17.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.030 4.030 10 C -0.058 4.058 11 N -0.246 5.246 12 C -0.117 4.117 13 C -0.006 4.006 14 O -0.326 6.326 15 C -0.002 4.002 16 C -0.058 4.058 17 H 0.033 0.967 18 C -0.140 4.140 19 C 0.016 3.984 20 H 0.104 0.896 21 C -0.182 4.182 22 C -0.180 4.180 23 C -0.039 4.039 24 O -0.334 6.334 25 H 0.070 0.930 26 H -0.004 1.004 27 H 0.012 0.988 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.027 0.973 31 H 0.112 0.888 32 H 0.130 0.870 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.088 0.912 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.067 0.933 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.286 -14.786 8.737 17.326 hybrid contribution -0.341 2.337 -0.223 2.372 sum 1.945 -12.449 8.515 15.207 Atomic orbital electron populations 1.70146 1.08006 1.27605 1.51412 1.26021 0.95683 1.03492 0.94649 0.85506 0.78263 0.77985 0.79331 1.18877 1.20970 1.19018 1.21565 0.93452 0.92205 1.50820 0.91953 1.19419 0.94965 0.94319 0.94313 1.22113 0.95953 0.86410 1.01344 1.62744 1.26384 1.33397 1.02110 1.22841 0.97351 0.98006 0.93503 1.22781 0.93818 0.94820 0.89182 1.87921 1.36434 1.92920 1.15370 1.22835 0.96739 0.94545 0.86076 1.22197 0.94085 0.97707 0.91841 0.96712 1.21720 0.97513 1.03060 0.91754 1.23235 0.91366 0.88417 0.95379 0.89607 1.23321 0.98154 1.03365 0.93358 1.23107 0.97649 0.99341 0.97908 1.23263 1.00412 0.97867 0.82342 1.88574 1.71457 1.44825 1.28536 0.93014 1.00398 0.98772 0.91011 0.91704 0.97277 0.88798 0.86960 0.90327 0.87965 0.90163 0.87540 0.92997 0.86725 0.91207 0.88699 0.88509 0.93259 0.91033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.00 13.29 21.45 0.28 -59.72 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 3 Si 0.97 45.91 29.54 68.60 2.03 47.94 16 4 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.54 -32.21 9.11 25.60 0.23 -31.97 16 8 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 9 C 0.01 0.45 4.25 29.85 0.13 0.58 16 10 C 0.07 3.05 4.78 86.30 0.41 3.46 16 11 N -0.52 -19.66 4.75 -870.00 -4.13 -23.79 16 12 C 0.01 0.42 5.34 86.31 0.46 0.88 16 13 C 0.07 2.01 7.01 72.01 0.50 2.52 16 14 O -0.41 -13.50 10.83 -148.98 -1.61 -15.12 16 15 C 0.07 2.22 5.98 72.02 0.43 2.65 16 16 C 0.05 1.87 1.46 44.93 0.07 1.93 16 17 H 0.01 0.72 6.02 -2.39 -0.01 0.71 16 18 C -0.10 -3.26 4.27 30.59 0.13 -3.13 16 19 C 0.07 2.07 3.24 31.26 0.10 2.17 16 20 H 0.09 2.05 6.54 -2.38 -0.02 2.04 16 21 C -0.14 -3.03 6.58 32.09 0.21 -2.82 16 22 C -0.14 -2.80 7.02 31.89 0.22 -2.58 16 23 C 0.04 1.10 7.80 72.45 0.56 1.66 16 24 O -0.41 -15.78 10.57 -148.98 -1.58 -17.36 16 25 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 26 H -0.02 -1.39 6.61 -2.39 -0.02 -1.41 16 27 H -0.01 -0.38 6.42 -2.39 -0.02 -0.39 16 28 H 0.07 3.06 6.33 -2.39 -0.02 3.04 16 29 H 0.06 2.76 8.10 -2.38 -0.02 2.74 16 30 H 0.01 0.40 6.61 -2.39 -0.02 0.38 16 31 H 0.09 3.04 8.12 -2.39 -0.02 3.02 16 32 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.08 1.87 8.14 -2.38 -0.02 1.86 16 34 H 0.10 2.76 6.67 -2.39 -0.02 2.74 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 37 H 0.05 2.00 6.17 -2.39 -0.01 1.98 16 38 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.07 1.62 8.06 -2.39 -0.02 1.60 16 40 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -75.14 327.56 -0.11 -75.25 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.97 Total: 17.02 kcal Atomic # 6 Polarization: -28.15 SS G_CDS: 3.93 Total: -24.22 kcal Atomic # 7 Polarization: -79.66 SS G_CDS: -3.84 Total: -83.51 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -3.19 Total: -32.47 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -75.14 -0.11 -75.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933670718.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.830 kcal (2) G-P(sol) polarization free energy of solvation -75.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds