Wall clock time and date at job start Mon Mar 30 2020 01:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48494 * 109.46967 * 269.99684 * 3 2 1 5 5 H 1.48506 * 109.46892 * 29.99852 * 3 2 1 6 6 H 1.48493 * 109.47086 * 149.99399 * 3 2 1 7 7 C 1.37878 * 120.00592 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00548 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99517 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46889 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46845 * 180.02562 * 10 9 7 12 12 C 1.47020 * 111.03537 * 52.44059 * 11 10 9 13 13 C 1.53100 * 109.28814 * 182.34898 * 12 11 10 14 14 O 1.43009 * 109.25715 * 303.16670 * 13 12 11 15 15 C 1.43017 * 113.73938 * 58.67542 * 14 13 12 16 16 C 1.47013 * 110.99630 * 176.09504 * 11 10 9 17 17 H 1.09010 * 109.50732 * 297.58584 * 16 11 10 18 18 C 1.52998 * 109.50839 * 57.67398 * 16 11 10 19 19 C 1.53001 * 109.47026 * 183.78991 * 18 16 11 20 20 H 1.08996 * 110.67776 * 306.43318 * 19 18 16 21 21 C 1.55001 * 110.61353 * 183.47225 * 19 18 16 22 22 C 1.54814 * 102.09123 * 204.47480 * 21 19 18 23 23 C 1.54102 * 104.18515 * 20.87914 * 22 21 19 24 24 O 1.43738 * 107.42234 * 1.95668 * 23 22 21 25 25 H 0.96995 * 120.00586 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47406 * 60.00099 * 9 7 2 27 27 H 1.09002 * 109.47430 * 299.99530 * 9 7 2 28 28 H 1.08998 * 109.46861 * 59.99954 * 10 9 7 29 29 H 1.09002 * 109.46856 * 300.00071 * 10 9 7 30 30 H 1.08995 * 109.47629 * 62.41010 * 12 11 10 31 31 H 1.09001 * 109.53856 * 302.32213 * 12 11 10 32 32 H 1.09007 * 109.50298 * 183.23764 * 13 12 11 33 33 H 1.08997 * 109.51218 * 63.10635 * 13 12 11 34 34 H 1.09005 * 109.50818 * 181.38997 * 15 14 13 35 35 H 1.09005 * 109.50588 * 61.26393 * 15 14 13 36 36 H 1.09000 * 109.46962 * 63.78530 * 18 16 11 37 37 H 1.09002 * 109.46713 * 303.78664 * 18 16 11 38 38 H 1.09006 * 110.90473 * 86.28009 * 21 19 18 39 39 H 1.08994 * 110.91213 * 322.67227 * 21 19 18 40 40 H 1.09005 * 110.48727 * 262.20839 * 22 21 19 41 41 H 1.08990 * 110.49053 * 139.55703 * 22 21 19 42 42 H 1.08998 * 109.87445 * 121.45564 * 23 22 21 43 43 H 1.08998 * 109.87994 * 242.45231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5110 -4.9342 -0.0001 12 6 0.5231 -4.9727 -1.0882 13 6 -0.2577 -6.2876 -1.0161 14 8 0.6583 -7.3841 -1.0776 15 6 1.6336 -7.3789 -0.0316 16 6 2.4336 -6.0751 -0.0936 17 1 2.9780 -6.0266 -1.0367 18 6 3.4244 -6.0277 1.0713 19 6 4.4422 -7.1602 0.9214 20 1 3.9370 -8.1193 0.8087 21 6 5.4071 -7.1907 2.1341 22 6 6.6549 -7.8868 1.5382 23 6 6.5074 -7.6891 0.0171 24 8 5.3173 -6.9135 -0.2027 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5568 0.8903 28 1 2.8721 -3.6042 0.8905 29 1 2.8722 -3.6042 -0.8895 30 1 1.0363 -4.9062 -2.0475 31 1 -0.1657 -4.1342 -0.9851 32 1 -0.9514 -6.3455 -1.8550 33 1 -0.8138 -6.3300 -0.0796 34 1 2.3078 -8.2260 -0.1583 35 1 1.1326 -7.4530 0.9337 36 1 2.8856 -6.1453 2.0115 37 1 3.9439 -5.0694 1.0676 38 1 4.9869 -7.7779 2.9507 39 1 5.6466 -6.1806 2.4662 40 1 6.6548 -8.9482 1.7867 41 1 7.5663 -7.4098 1.8983 42 1 7.3744 -7.1561 -0.3731 43 1 6.4151 -8.6571 -0.4753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933670728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:49 Heat of formation + Delta-G solvation = -97.272734 kcal Electronic energy + Delta-G solvation = -21631.672913 eV Core-core repulsion = 18483.439693 eV Total energy + Delta-G solvation = -3148.233220 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.92218 -38.95842 -35.87934 -33.65006 -32.64656 -32.16036 -29.87899 -29.51618 -26.74343 -25.92239 -23.89592 -22.94745 -21.64202 -21.09058 -20.49777 -19.35518 -16.96413 -16.49031 -16.06345 -15.91158 -15.65305 -15.15309 -14.72878 -14.55471 -14.24760 -14.09056 -13.63120 -13.36891 -13.10163 -12.64767 -12.16584 -12.08468 -11.95401 -11.83150 -11.73219 -11.28593 -11.08791 -11.00404 -10.90367 -10.77586 -10.59690 -10.45976 -10.17413 -9.90488 -9.69412 -9.42329 -9.12757 -9.10066 -8.33617 -7.73772 -6.00138 -4.02179 3.32354 3.38474 3.41954 3.77979 4.05750 4.19671 4.43770 4.48383 4.66375 4.75435 4.94896 5.02763 5.11524 5.29449 5.35446 5.36958 5.41239 5.42666 5.51862 5.54226 5.60917 5.64360 5.70559 5.79970 5.83132 5.92883 5.97685 6.11891 6.24543 6.30717 6.33096 6.47744 6.52964 6.85702 6.96666 7.34001 7.46492 7.57018 7.77093 7.85955 8.04890 8.43329 9.04428 9.61553 11.11320 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.005021 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.255603 B = 5575.347849 C = 6950.740867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.024 3.976 10 C 0.062 3.938 11 N -0.534 5.534 12 C 0.017 3.983 13 C 0.063 3.937 14 O -0.391 6.391 15 C 0.070 3.930 16 C 0.050 3.950 17 H 0.051 0.949 18 C -0.107 4.107 19 C 0.075 3.925 20 H 0.070 0.930 21 C -0.151 4.151 22 C -0.156 4.156 23 C 0.045 3.955 24 O -0.370 6.370 25 H 0.260 0.740 26 H 0.018 0.982 27 H 0.024 0.976 28 H 0.066 0.934 29 H 0.020 0.980 30 H 0.036 0.964 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.989 -17.561 2.649 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.014 4.014 10 C -0.065 4.065 11 N -0.259 5.259 12 C -0.111 4.111 13 C -0.014 4.014 14 O -0.309 6.309 15 C -0.007 4.007 16 C -0.059 4.059 17 H 0.069 0.931 18 C -0.144 4.144 19 C 0.018 3.982 20 H 0.088 0.912 21 C -0.188 4.188 22 C -0.194 4.194 23 C -0.032 4.032 24 O -0.289 6.289 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.039 0.961 30 H 0.054 0.946 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.099 0.901 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.529 -17.480 2.771 19.233 hybrid contribution 1.063 1.145 -0.420 1.617 sum 8.592 -16.335 2.351 18.606 Atomic orbital electron populations 1.69959 1.06017 1.26597 1.50760 1.24979 0.94823 0.99157 0.95276 0.86598 0.79857 0.83486 0.78087 1.20701 1.21197 1.19886 1.21176 0.93006 0.90983 1.50765 0.92781 1.19191 0.94068 0.90414 0.97696 1.22373 0.97007 0.87899 0.99194 1.62358 1.15967 1.02968 1.44615 1.22816 0.96493 0.98859 0.92958 1.22728 0.91305 0.85404 1.01918 1.87920 1.44446 1.47544 1.51040 1.22725 0.90368 0.96672 0.90948 1.22203 0.93178 0.92310 0.98221 0.93067 1.21676 0.95112 0.98736 0.98900 1.23294 0.91495 0.98457 0.84993 0.91218 1.23172 0.95231 1.02084 0.98341 1.22930 0.99296 1.01332 0.95832 1.23105 0.89013 0.95869 0.95195 1.89003 1.28070 1.67998 1.43837 0.92997 0.96344 0.95728 0.91586 0.96140 0.94593 0.88079 0.88896 0.92478 0.89321 0.92657 0.89667 0.89870 0.90166 0.90104 0.90861 0.90575 0.90114 0.92669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.15 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.61 4.49 -27.88 -0.13 0.49 16 10 C 0.06 1.34 4.50 -3.82 -0.02 1.32 16 11 N -0.53 -10.01 4.64 -226.33 -1.05 -11.06 16 12 C 0.02 0.31 5.14 -3.71 -0.02 0.29 16 13 C 0.06 0.96 7.01 37.21 0.26 1.22 16 14 O -0.39 -6.24 10.83 -35.23 -0.38 -6.62 16 15 C 0.07 0.99 5.96 37.21 0.22 1.21 16 16 C 0.05 0.80 2.03 -67.60 -0.14 0.66 16 17 H 0.05 0.93 7.93 -51.92 -0.41 0.52 16 18 C -0.11 -1.48 4.27 -26.73 -0.11 -1.59 16 19 C 0.08 0.88 3.13 -25.67 -0.08 0.80 16 20 H 0.07 0.73 6.41 -51.93 -0.33 0.40 16 21 C -0.15 -1.42 6.59 -24.72 -0.16 -1.59 16 22 C -0.16 -1.29 7.01 -25.20 -0.18 -1.46 16 23 C 0.05 0.45 7.69 37.73 0.29 0.74 16 24 O -0.37 -5.10 10.97 -35.23 -0.39 -5.49 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.02 0.50 6.27 -51.93 -0.33 0.18 16 27 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 1.40 6.41 -51.93 -0.33 1.07 16 29 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.10 1.99 6.07 -51.93 -0.32 1.67 16 32 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.08 6.59 -51.93 -0.34 0.74 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.08 1.30 6.25 -51.93 -0.32 0.98 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -31.36 330.70 -9.01 -40.37 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -7.42 Total: -1.37 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.47 Total: -11.46 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.31 Total: -37.17 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.77 Total: -12.11 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.36 -9.01 -40.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933670728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.906 kcal (2) G-P(sol) polarization free energy of solvation -31.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds