Wall clock time and date at job start Mon Mar 30 2020 01:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99740 * 2 1 4 4 H 1.48494 * 109.46967 * 269.99684 * 3 2 1 5 5 H 1.48506 * 109.46892 * 29.99852 * 3 2 1 6 6 H 1.48493 * 109.47086 * 149.99399 * 3 2 1 7 7 C 1.37878 * 120.00592 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00548 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99517 * 0.02562 * 7 2 1 10 10 C 1.53008 * 109.46889 * 179.97438 * 9 7 2 11 11 N 1.46900 * 109.46845 * 180.02562 * 10 9 7 12 12 C 1.47020 * 111.03537 * 52.44059 * 11 10 9 13 13 C 1.53100 * 109.28814 * 182.34898 * 12 11 10 14 14 O 1.43009 * 109.25715 * 303.16670 * 13 12 11 15 15 C 1.43017 * 113.73938 * 58.67542 * 14 13 12 16 16 C 1.47013 * 110.99630 * 176.09504 * 11 10 9 17 17 H 1.09010 * 109.50732 * 297.58584 * 16 11 10 18 18 C 1.52998 * 109.50839 * 57.67398 * 16 11 10 19 19 C 1.53001 * 109.47026 * 183.78991 * 18 16 11 20 20 H 1.08996 * 110.67776 * 306.43318 * 19 18 16 21 21 C 1.55001 * 110.61353 * 183.47225 * 19 18 16 22 22 C 1.54814 * 102.09123 * 204.47480 * 21 19 18 23 23 C 1.54102 * 104.18515 * 20.87914 * 22 21 19 24 24 O 1.43738 * 107.42234 * 1.95668 * 23 22 21 25 25 H 0.96995 * 120.00586 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47406 * 60.00099 * 9 7 2 27 27 H 1.09002 * 109.47430 * 299.99530 * 9 7 2 28 28 H 1.08998 * 109.46861 * 59.99954 * 10 9 7 29 29 H 1.09002 * 109.46856 * 300.00071 * 10 9 7 30 30 H 1.08995 * 109.47629 * 62.41010 * 12 11 10 31 31 H 1.09001 * 109.53856 * 302.32213 * 12 11 10 32 32 H 1.09007 * 109.50298 * 183.23764 * 13 12 11 33 33 H 1.08997 * 109.51218 * 63.10635 * 13 12 11 34 34 H 1.09005 * 109.50818 * 181.38997 * 15 14 13 35 35 H 1.09005 * 109.50588 * 61.26393 * 15 14 13 36 36 H 1.09000 * 109.46962 * 63.78530 * 18 16 11 37 37 H 1.09002 * 109.46713 * 303.78664 * 18 16 11 38 38 H 1.09006 * 110.90473 * 86.28009 * 21 19 18 39 39 H 1.08994 * 110.91213 * 322.67227 * 21 19 18 40 40 H 1.09005 * 110.48727 * 262.20839 * 22 21 19 41 41 H 1.08990 * 110.49053 * 139.55703 * 22 21 19 42 42 H 1.08998 * 109.87445 * 121.45564 * 23 22 21 43 43 H 1.08998 * 109.87994 * 242.45231 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5465 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5110 -4.9342 -0.0001 12 6 0.5231 -4.9727 -1.0882 13 6 -0.2577 -6.2876 -1.0161 14 8 0.6583 -7.3841 -1.0776 15 6 1.6336 -7.3789 -0.0316 16 6 2.4336 -6.0751 -0.0936 17 1 2.9780 -6.0266 -1.0367 18 6 3.4244 -6.0277 1.0713 19 6 4.4422 -7.1602 0.9214 20 1 3.9370 -8.1193 0.8087 21 6 5.4071 -7.1907 2.1341 22 6 6.6549 -7.8868 1.5382 23 6 6.5074 -7.6891 0.0171 24 8 5.3173 -6.9135 -0.2027 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6242 -2.5568 0.8903 28 1 2.8721 -3.6042 0.8905 29 1 2.8722 -3.6042 -0.8895 30 1 1.0363 -4.9062 -2.0475 31 1 -0.1657 -4.1342 -0.9851 32 1 -0.9514 -6.3455 -1.8550 33 1 -0.8138 -6.3300 -0.0796 34 1 2.3078 -8.2260 -0.1583 35 1 1.1326 -7.4530 0.9337 36 1 2.8856 -6.1453 2.0115 37 1 3.9439 -5.0694 1.0676 38 1 4.9869 -7.7779 2.9507 39 1 5.6466 -6.1806 2.4662 40 1 6.6548 -8.9482 1.7867 41 1 7.5663 -7.4098 1.8983 42 1 7.3744 -7.1561 -0.3731 43 1 6.4151 -8.6571 -0.4753 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933670728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:42:49 Heat of formation + Delta-G solvation = -118.990654 kcal Electronic energy + Delta-G solvation = -21632.614673 eV Core-core repulsion = 18483.439693 eV Total energy + Delta-G solvation = -3149.174980 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.08531 -40.01468 -37.36527 -35.33237 -34.31038 -32.97249 -31.72418 -30.62315 -28.32944 -27.00723 -25.78002 -24.11477 -22.68190 -22.22262 -21.93211 -20.79073 -18.67659 -17.79782 -17.23629 -17.12906 -16.79959 -16.56205 -16.14504 -16.03837 -15.63197 -15.35196 -14.97862 -14.68023 -14.47167 -14.12556 -13.70787 -13.49596 -13.25979 -13.00912 -12.84149 -12.71769 -12.59299 -12.45096 -12.26916 -12.11720 -11.88624 -11.67903 -11.54338 -11.39760 -11.27417 -11.20789 -10.63103 -10.55562 -10.47324 -9.33019 -8.22244 -6.33324 1.38639 1.39902 1.51146 2.38242 2.78374 2.91826 2.96359 3.11174 3.67880 3.72018 3.81556 4.02642 4.06303 4.07146 4.16093 4.19239 4.24871 4.32713 4.42930 4.51208 4.57501 4.66765 4.67825 4.70980 4.82164 4.84590 4.87578 4.91981 4.97135 4.97633 5.08895 5.12862 5.22576 5.26614 5.41354 5.60725 5.73926 5.97737 6.04158 6.09896 6.19806 6.27593 6.81926 7.35543 8.89745 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.005021 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.255603 B = 5575.347849 C = 6950.740867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.034 3.966 10 C 0.081 3.919 11 N -0.536 5.536 12 C 0.016 3.984 13 C 0.072 3.928 14 O -0.400 6.400 15 C 0.072 3.928 16 C 0.052 3.948 17 H 0.026 0.974 18 C -0.102 4.102 19 C 0.075 3.925 20 H 0.088 0.912 21 C -0.149 4.149 22 C -0.149 4.149 23 C 0.036 3.964 24 O -0.407 6.407 25 H 0.265 0.735 26 H -0.002 1.002 27 H -0.002 1.002 28 H 0.070 0.930 29 H 0.006 0.994 30 H 0.022 0.978 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.066 0.934 34 H 0.115 0.885 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.081 0.919 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.049 -18.946 3.531 21.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.003 4.003 10 C -0.046 4.046 11 N -0.261 5.261 12 C -0.112 4.112 13 C -0.005 4.005 14 O -0.318 6.318 15 C -0.005 4.005 16 C -0.057 4.057 17 H 0.044 0.956 18 C -0.139 4.139 19 C 0.018 3.982 20 H 0.106 0.894 21 C -0.186 4.186 22 C -0.187 4.187 23 C -0.041 4.041 24 O -0.327 6.327 25 H 0.073 0.927 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.088 0.912 29 H 0.024 0.976 30 H 0.040 0.960 31 H 0.097 0.903 32 H 0.134 0.866 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.600 -18.887 3.655 21.072 hybrid contribution 0.722 1.554 -0.723 1.860 sum 9.322 -17.333 2.932 19.898 Atomic orbital electron populations 1.70083 1.07681 1.27843 1.51250 1.25904 0.95752 1.03119 0.94497 0.85461 0.78705 0.78500 0.78470 1.19891 1.20387 1.18859 1.21570 0.93346 0.92345 1.51203 0.92645 1.18997 0.94162 0.91796 0.95355 1.21997 0.95719 0.88277 0.98652 1.62352 1.16345 1.02564 1.44846 1.22815 0.96155 1.00198 0.92068 1.22731 0.90953 0.83345 1.03481 1.87915 1.44773 1.47280 1.51861 1.22873 0.90293 0.96012 0.91286 1.22302 0.93197 0.92114 0.98060 0.95581 1.21635 0.95144 0.98739 0.98428 1.23355 0.91352 0.97841 0.85684 0.89422 1.23177 0.95326 1.02114 0.98032 1.22927 0.98956 1.02627 0.94142 1.23323 0.87838 0.96035 0.96868 1.88970 1.29604 1.69150 1.44984 0.92654 0.98352 0.98338 0.91165 0.97592 0.95999 0.90348 0.86605 0.91554 0.86766 0.91170 0.88387 0.92379 0.87911 0.91306 0.88696 0.89790 0.90026 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 44.89 29.54 68.60 2.03 46.91 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.55 -31.96 9.11 25.60 0.23 -31.72 16 8 H 0.06 3.15 7.74 -2.92 -0.02 3.12 16 9 C 0.03 1.87 4.49 29.85 0.13 2.00 16 10 C 0.08 3.66 4.50 86.31 0.39 4.04 16 11 N -0.54 -20.57 4.64 -869.97 -4.04 -24.61 16 12 C 0.02 0.60 5.14 86.31 0.44 1.04 16 13 C 0.07 2.11 7.01 72.02 0.50 2.62 16 14 O -0.40 -12.05 10.83 -148.98 -1.61 -13.66 16 15 C 0.07 1.89 5.96 72.01 0.43 2.32 16 16 C 0.05 1.65 2.03 44.92 0.09 1.74 16 17 H 0.03 0.97 7.93 -2.38 -0.02 0.95 16 18 C -0.10 -2.76 4.27 30.59 0.13 -2.63 16 19 C 0.07 1.63 3.13 31.28 0.10 1.73 16 20 H 0.09 1.58 6.41 -2.39 -0.02 1.57 16 21 C -0.15 -2.48 6.59 31.90 0.21 -2.27 16 22 C -0.15 -2.05 7.01 31.59 0.22 -1.83 16 23 C 0.04 0.66 7.69 72.35 0.56 1.22 16 24 O -0.41 -10.95 10.97 -148.98 -1.63 -12.59 16 25 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 26 H 0.00 -0.10 6.27 -2.39 -0.01 -0.12 16 27 H 0.00 -0.11 8.14 -2.39 -0.02 -0.12 16 28 H 0.07 3.09 6.41 -2.39 -0.02 3.08 16 29 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 3.26 6.07 -2.39 -0.01 3.25 16 32 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 33 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.11 2.44 6.59 -2.38 -0.02 2.42 16 35 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 36 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.06 1.86 6.25 -2.39 -0.01 1.85 16 38 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.07 1.31 8.06 -2.39 -0.02 1.29 16 40 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 41 H 0.08 1.03 8.14 -2.39 -0.02 1.02 16 42 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -68.91 330.70 -0.11 -69.01 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.97 Total: 12.47 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.90 Total: -20.96 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.75 Total: -81.19 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -3.25 Total: -26.25 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -68.91 -0.11 -69.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933670728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.978 kcal (2) G-P(sol) polarization free energy of solvation -68.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds