Wall clock time and date at job start Mon Mar 30 2020 01:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99670 * 2 1 4 4 H 1.48507 * 109.46763 * 239.99334 * 3 2 1 5 5 H 1.48498 * 109.47570 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47451 * 119.99751 * 3 2 1 7 7 C 1.37874 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00024 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47357 * 299.99522 * 9 7 2 11 11 O 1.42904 * 109.46992 * 59.99434 * 9 7 2 12 12 C 1.52998 * 109.47391 * 179.97438 * 9 7 2 13 13 N 1.46899 * 109.47224 * 179.97438 * 12 9 7 14 14 C 1.46904 * 110.99717 * 180.02562 * 13 12 9 15 15 H 1.09000 * 110.45552 * 313.44533 * 14 13 12 16 16 C 1.54869 * 110.50527 * 76.03657 * 14 13 12 17 17 C 1.55013 * 102.09998 * 139.63596 * 16 14 13 18 18 O 1.44426 * 103.52425 * 323.10596 * 17 16 14 19 19 C 1.43522 * 106.92315 * 39.84805 * 18 17 16 20 20 C 1.52771 * 109.83730 * 92.96221 * 19 18 17 21 21 C 1.53046 * 109.46710 * 61.79249 * 20 19 18 22 22 C 1.52991 * 109.44738 * 59.54142 * 21 20 19 23 23 C 1.53001 * 109.54319 * 299.76844 * 22 21 20 24 24 C 1.52767 * 109.84704 * 214.28670 * 19 18 17 25 25 H 0.96994 * 120.00368 * 0.02562 * 1 2 3 26 26 H 0.96705 * 114.00139 * 60.00108 * 11 9 7 27 27 H 1.09001 * 109.46953 * 60.00096 * 12 9 7 28 28 H 1.08998 * 109.47004 * 300.00380 * 12 9 7 29 29 H 1.00901 * 111.00208 * 56.04864 * 13 12 9 30 30 H 1.09000 * 110.89974 * 257.83883 * 16 14 13 31 31 H 1.09004 * 110.90678 * 21.43274 * 16 14 13 32 32 H 1.08994 * 110.60874 * 81.61999 * 17 16 14 33 33 H 1.09004 * 110.60635 * 204.43734 * 17 16 14 34 34 H 1.09014 * 109.46762 * 181.78599 * 20 19 18 35 35 H 1.08996 * 109.47775 * 301.78577 * 20 19 18 36 36 H 1.09003 * 109.46853 * 299.55178 * 21 20 19 37 37 H 1.08991 * 109.47995 * 179.54269 * 21 20 19 38 38 H 1.08998 * 109.45828 * 179.74198 * 22 21 20 39 39 H 1.09003 * 109.44544 * 59.78427 * 22 21 20 40 40 H 1.08997 * 109.47244 * 300.24104 * 23 22 21 41 41 H 1.08997 * 109.47433 * 180.23082 * 23 22 21 42 42 H 1.09000 * 109.47244 * 58.21512 * 24 19 18 43 43 H 1.09007 * 109.46748 * 178.21763 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5568 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2453 -3.6620 0.0005 13 7 1.5109 -4.9342 0.0012 14 6 2.4354 -6.0758 0.0018 15 1 3.2210 -5.9302 -0.7397 16 6 3.0488 -6.2764 1.4096 17 6 3.0422 -7.8201 1.5500 18 8 1.8144 -8.2132 0.8989 19 6 1.6769 -7.3876 -0.2670 20 6 2.2842 -8.0947 -1.4775 21 6 1.5298 -9.4008 -1.7367 22 6 0.0545 -9.0932 -2.0005 23 6 -0.5491 -8.3955 -0.7799 24 6 0.2004 -7.0870 -0.5185 25 1 -0.4850 0.8400 -0.0004 26 1 0.9223 -2.5298 -1.9976 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6042 -0.8894 29 1 0.8742 -4.9846 -0.7800 30 1 4.0659 -5.8865 1.4498 31 1 2.4257 -5.8135 2.1749 32 1 3.9025 -8.2553 1.0417 33 1 3.0319 -8.1097 2.6009 34 1 2.2050 -7.4495 -2.3526 35 1 3.3337 -8.3140 -1.2815 36 1 1.6155 -10.0491 -0.8647 37 1 1.9576 -9.9014 -2.6052 38 1 -0.4821 -10.0229 -2.1897 39 1 -0.0304 -8.4415 -2.8702 40 1 -0.4605 -9.0453 0.0907 41 1 -1.6011 -8.1806 -0.9675 42 1 -0.2240 -6.5936 0.3558 43 1 0.1053 -6.4341 -1.3862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933872998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:44 Heat of formation + Delta-G solvation = -111.249921 kcal Electronic energy + Delta-G solvation = -22016.973647 eV Core-core repulsion = 18868.134330 eV Total energy + Delta-G solvation = -3148.839317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49097 -36.60890 -36.29237 -34.28338 -32.12039 -30.92311 -30.34958 -30.29149 -27.60908 -25.08000 -23.87049 -22.73872 -22.00072 -20.42684 -19.97685 -19.19946 -16.92145 -16.37035 -16.02489 -15.45058 -15.03817 -14.62645 -14.55938 -14.27772 -13.95161 -13.73114 -13.39661 -13.10150 -12.76662 -12.59821 -12.14951 -12.07256 -11.75475 -11.51265 -11.40003 -11.15921 -11.06373 -10.93129 -10.87426 -10.77404 -10.69543 -10.42163 -10.29785 -10.11601 -9.87712 -9.36813 -9.02591 -8.57535 -8.19500 -7.82305 -6.00827 -4.19500 3.28077 3.33731 3.35115 3.93855 4.33656 4.52429 4.64019 4.78260 4.86957 4.94271 5.06435 5.24814 5.26042 5.26438 5.38016 5.44157 5.55605 5.59896 5.65409 5.71763 5.74589 5.85155 5.89519 5.99454 6.08282 6.12898 6.16777 6.20856 6.27568 6.31986 6.32838 6.44904 6.49510 6.56916 6.87372 7.09702 7.51916 7.75226 7.84406 7.98522 8.22031 8.83763 9.36545 9.57491 11.03395 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030450 B = 0.004407 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.310268 B = 6352.127774 C = 6838.351298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.081 3.919 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.575 4.575 8 H 0.053 0.947 9 C 0.233 3.767 10 H 0.064 0.936 11 O -0.565 6.565 12 C 0.035 3.965 13 N -0.674 5.674 14 C 0.061 3.939 15 H 0.045 0.955 16 C -0.146 4.146 17 C 0.047 3.953 18 O -0.359 6.359 19 C 0.113 3.887 20 C -0.131 4.131 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.117 4.117 24 C -0.105 4.105 25 H 0.261 0.739 26 H 0.340 0.660 27 H 0.064 0.936 28 H 0.015 0.985 29 H 0.347 0.653 30 H 0.071 0.929 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.303 -17.326 -2.057 17.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.126 4.126 3 Si 0.717 3.283 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.613 4.613 8 H 0.072 0.928 9 C 0.175 3.825 10 H 0.082 0.918 11 O -0.367 6.367 12 C -0.094 4.094 13 N -0.309 5.309 14 C -0.050 4.050 15 H 0.063 0.937 16 C -0.184 4.184 17 C -0.030 4.030 18 O -0.278 6.278 19 C 0.073 3.927 20 C -0.169 4.169 21 C -0.150 4.150 22 C -0.157 4.157 23 C -0.154 4.154 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.183 0.817 27 H 0.082 0.918 28 H 0.034 0.966 29 H 0.169 0.831 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.105 0.895 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.400 -17.422 -0.854 17.772 hybrid contribution 1.711 1.297 -1.326 2.523 sum 5.111 -16.125 -2.180 17.056 Atomic orbital electron populations 1.70067 1.05908 1.26539 1.46798 1.25022 0.94682 0.99067 0.93817 0.86736 0.79721 0.83236 0.78650 1.20229 1.21160 1.20151 1.21588 0.93061 0.91600 1.55041 0.92831 1.19408 0.88119 0.88818 0.86140 0.91849 1.86594 1.38543 1.96238 1.15312 1.22883 0.97409 0.90014 0.99103 1.60761 1.18708 1.00861 1.50612 1.22842 0.94160 0.91606 0.96422 0.93679 1.23212 1.01277 0.95875 0.98054 1.23473 0.87598 0.94020 0.97958 1.88854 1.40723 1.59247 1.39003 1.21901 0.96312 0.88681 0.85796 1.21983 0.99366 0.97613 0.97893 1.21425 0.95297 0.97064 1.01199 1.21544 0.95705 1.00090 0.98369 1.21501 0.98824 0.97026 0.98082 1.21534 0.92733 0.97055 1.02960 0.92917 0.81677 0.91750 0.96641 0.83064 0.91011 0.89163 0.92926 0.89286 0.91334 0.92077 0.91441 0.92589 0.92421 0.92258 0.91505 0.92164 0.89524 0.91022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.37 12.84 55.43 0.71 -24.66 16 2 C 0.08 2.25 5.40 -17.82 -0.10 2.15 16 3 Si 0.89 21.11 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.57 -15.70 8.76 -34.44 -0.30 -16.00 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.23 5.84 3.10 -27.88 -0.09 5.76 16 10 H 0.06 1.80 8.14 -51.93 -0.42 1.38 16 11 O -0.56 -14.15 12.07 -35.23 -0.43 -14.58 16 12 C 0.03 0.71 5.17 -3.83 -0.02 0.69 16 13 N -0.67 -11.86 5.35 -105.19 -0.56 -12.42 16 14 C 0.06 0.89 2.94 -66.26 -0.19 0.70 16 15 H 0.05 0.67 7.59 -51.93 -0.39 0.27 16 16 C -0.15 -1.99 6.27 -24.68 -0.15 -2.15 16 17 C 0.05 0.55 7.66 38.22 0.29 0.85 16 18 O -0.36 -5.02 9.70 -35.23 -0.34 -5.36 16 19 C 0.11 1.51 0.71 -90.39 -0.06 1.44 16 20 C -0.13 -1.52 4.65 -26.82 -0.12 -1.64 16 21 C -0.11 -1.19 5.80 -26.71 -0.15 -1.35 16 22 C -0.12 -1.26 5.91 -26.74 -0.16 -1.42 16 23 C -0.12 -1.39 5.80 -26.71 -0.15 -1.55 16 24 C -0.11 -1.44 3.74 -26.83 -0.10 -1.54 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.34 7.56 9.04 45.56 0.41 7.97 16 27 H 0.06 1.31 7.71 -51.93 -0.40 0.91 16 28 H 0.02 0.31 8.12 -51.93 -0.42 -0.11 16 29 H 0.35 6.12 5.63 -39.29 -0.22 5.90 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.09 1.38 8.07 -51.93 -0.42 0.97 16 32 H 0.05 0.56 8.11 -51.93 -0.42 0.13 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 35 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 36 H 0.07 0.76 7.76 -51.93 -0.40 0.36 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.84 7.76 -51.93 -0.40 0.44 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.36 7.73 -51.93 -0.40 0.96 16 43 H 0.07 0.98 6.77 -51.92 -0.35 0.63 16 LS Contribution 330.32 15.07 4.98 4.98 Total: -1.00 -29.63 330.32 -8.75 -38.38 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.77 Total: 11.64 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -1.32 Total: -14.06 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.15 Total: -37.07 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -0.77 Total: -19.94 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.63 -8.75 -38.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933872998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.871 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds