Wall clock time and date at job start Mon Mar 30 2020 01:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99670 * 2 1 4 4 H 1.48507 * 109.46763 * 239.99334 * 3 2 1 5 5 H 1.48498 * 109.47570 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47451 * 119.99751 * 3 2 1 7 7 C 1.37874 * 120.00239 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00188 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00024 * 0.02562 * 7 2 1 10 10 H 1.08998 * 109.47357 * 299.99522 * 9 7 2 11 11 O 1.42904 * 109.46992 * 59.99434 * 9 7 2 12 12 C 1.52998 * 109.47391 * 179.97438 * 9 7 2 13 13 N 1.46899 * 109.47224 * 179.97438 * 12 9 7 14 14 C 1.46904 * 110.99717 * 180.02562 * 13 12 9 15 15 H 1.09000 * 110.45552 * 313.44533 * 14 13 12 16 16 C 1.54869 * 110.50527 * 76.03657 * 14 13 12 17 17 C 1.55013 * 102.09998 * 139.63596 * 16 14 13 18 18 O 1.44426 * 103.52425 * 323.10596 * 17 16 14 19 19 C 1.43522 * 106.92315 * 39.84805 * 18 17 16 20 20 C 1.52771 * 109.83730 * 92.96221 * 19 18 17 21 21 C 1.53046 * 109.46710 * 61.79249 * 20 19 18 22 22 C 1.52991 * 109.44738 * 59.54142 * 21 20 19 23 23 C 1.53001 * 109.54319 * 299.76844 * 22 21 20 24 24 C 1.52767 * 109.84704 * 214.28670 * 19 18 17 25 25 H 0.96994 * 120.00368 * 0.02562 * 1 2 3 26 26 H 0.96705 * 114.00139 * 60.00108 * 11 9 7 27 27 H 1.09001 * 109.46953 * 60.00096 * 12 9 7 28 28 H 1.08998 * 109.47004 * 300.00380 * 12 9 7 29 29 H 1.00901 * 111.00208 * 56.04864 * 13 12 9 30 30 H 1.09000 * 110.89974 * 257.83883 * 16 14 13 31 31 H 1.09004 * 110.90678 * 21.43274 * 16 14 13 32 32 H 1.08994 * 110.60874 * 81.61999 * 17 16 14 33 33 H 1.09004 * 110.60635 * 204.43734 * 17 16 14 34 34 H 1.09014 * 109.46762 * 181.78599 * 20 19 18 35 35 H 1.08996 * 109.47775 * 301.78577 * 20 19 18 36 36 H 1.09003 * 109.46853 * 299.55178 * 21 20 19 37 37 H 1.08991 * 109.47995 * 179.54269 * 21 20 19 38 38 H 1.08998 * 109.45828 * 179.74198 * 22 21 20 39 39 H 1.09003 * 109.44544 * 59.78427 * 22 21 20 40 40 H 1.08997 * 109.47244 * 300.24104 * 23 22 21 41 41 H 1.08997 * 109.47433 * 180.23082 * 23 22 21 42 42 H 1.09000 * 109.47244 * 58.21512 * 24 19 18 43 43 H 1.09007 * 109.46748 * 178.21763 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5568 0.8903 11 8 0.4299 -2.5751 -1.1665 12 6 2.2453 -3.6620 0.0005 13 7 1.5109 -4.9342 0.0012 14 6 2.4354 -6.0758 0.0018 15 1 3.2210 -5.9302 -0.7397 16 6 3.0488 -6.2764 1.4096 17 6 3.0422 -7.8201 1.5500 18 8 1.8144 -8.2132 0.8989 19 6 1.6769 -7.3876 -0.2670 20 6 2.2842 -8.0947 -1.4775 21 6 1.5298 -9.4008 -1.7367 22 6 0.0545 -9.0932 -2.0005 23 6 -0.5491 -8.3955 -0.7799 24 6 0.2004 -7.0870 -0.5185 25 1 -0.4850 0.8400 -0.0004 26 1 0.9223 -2.5298 -1.9976 27 1 2.8720 -3.6043 0.8905 28 1 2.8720 -3.6042 -0.8894 29 1 0.8742 -4.9846 -0.7800 30 1 4.0659 -5.8865 1.4498 31 1 2.4257 -5.8135 2.1749 32 1 3.9025 -8.2553 1.0417 33 1 3.0319 -8.1097 2.6009 34 1 2.2050 -7.4495 -2.3526 35 1 3.3337 -8.3140 -1.2815 36 1 1.6155 -10.0491 -0.8647 37 1 1.9576 -9.9014 -2.6052 38 1 -0.4821 -10.0229 -2.1897 39 1 -0.0304 -8.4415 -2.8702 40 1 -0.4605 -9.0453 0.0907 41 1 -1.6011 -8.1806 -0.9675 42 1 -0.2240 -6.5936 0.3558 43 1 0.1053 -6.4341 -1.3862 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933872998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:44 Heat of formation + Delta-G solvation = -132.000983 kcal Electronic energy + Delta-G solvation = -22017.873480 eV Core-core repulsion = 18868.134330 eV Total energy + Delta-G solvation = -3149.739150 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.56047 -38.30863 -37.34378 -35.83127 -34.24905 -31.97096 -31.68044 -31.27863 -29.36542 -26.52918 -25.33806 -23.73303 -23.19361 -22.07622 -21.14650 -20.20235 -18.97820 -17.54275 -17.16220 -16.74108 -16.63265 -16.18637 -16.06471 -15.62896 -15.38633 -14.89634 -14.54009 -14.51223 -14.34178 -13.72342 -13.32599 -13.16163 -13.06926 -13.02086 -12.88867 -12.72603 -12.62630 -12.40332 -12.23854 -12.03321 -11.94774 -11.87105 -11.36616 -11.29373 -11.05554 -10.88029 -10.70797 -10.38118 -10.14905 -9.26712 -8.13742 -6.40188 1.40559 1.42201 1.50465 2.38240 2.92226 3.11751 3.20921 3.55814 3.78291 3.85391 3.98567 4.11139 4.24373 4.27721 4.28436 4.35464 4.45413 4.46537 4.54714 4.59188 4.64373 4.69841 4.78629 4.80595 4.88367 4.94381 5.07275 5.09886 5.16545 5.18405 5.28815 5.31164 5.38066 5.47179 5.58600 5.61645 5.72492 6.01270 6.07580 6.22318 6.53212 6.73709 7.32779 7.53894 8.90701 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.030450 B = 0.004407 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.310268 B = 6352.127774 C = 6838.351298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.266 1.266 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.589 4.589 8 H 0.059 0.941 9 C 0.235 3.765 10 H 0.020 0.980 11 O -0.577 6.577 12 C 0.056 3.944 13 N -0.681 5.681 14 C 0.056 3.944 15 H 0.053 0.947 16 C -0.147 4.147 17 C 0.049 3.951 18 O -0.374 6.374 19 C 0.117 3.883 20 C -0.128 4.128 21 C -0.109 4.109 22 C -0.117 4.117 23 C -0.113 4.113 24 C -0.105 4.105 25 H 0.261 0.739 26 H 0.353 0.647 27 H 0.062 0.938 28 H 0.023 0.977 29 H 0.346 0.654 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.018 -18.302 -2.926 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.176 4.176 3 Si 0.785 3.215 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.194 1.194 7 C -0.627 4.627 8 H 0.077 0.923 9 C 0.177 3.823 10 H 0.038 0.962 11 O -0.380 6.380 12 C -0.073 4.073 13 N -0.316 5.316 14 C -0.054 4.054 15 H 0.071 0.929 16 C -0.186 4.186 17 C -0.027 4.027 18 O -0.294 6.294 19 C 0.077 3.923 20 C -0.166 4.166 21 C -0.146 4.146 22 C -0.155 4.155 23 C -0.151 4.151 24 C -0.143 4.143 25 H 0.070 0.930 26 H 0.198 0.802 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.168 0.832 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.136 -18.417 -1.725 19.197 hybrid contribution 1.142 1.563 -1.027 2.191 sum 6.278 -16.854 -2.752 18.195 Atomic orbital electron populations 1.70214 1.07702 1.27446 1.48230 1.25900 0.95461 1.02926 0.93311 0.85607 0.78352 0.78456 0.79112 1.19109 1.21031 1.19381 1.21997 0.93511 0.92746 1.54475 0.92254 1.19191 0.87962 0.90443 0.84715 0.96216 1.86527 1.39212 1.96352 1.15953 1.22442 0.95964 0.89638 0.99259 1.60692 1.19273 1.00789 1.50797 1.22973 0.93959 0.91083 0.97388 0.92928 1.23212 1.01349 0.97417 0.96582 1.23607 0.87564 0.92484 0.99074 1.88839 1.41886 1.59274 1.39367 1.21878 0.95732 0.88108 0.86597 1.21971 0.99881 0.97968 0.96801 1.21411 0.95106 0.96406 1.01719 1.21541 0.95900 1.00613 0.97438 1.21466 0.98975 0.95981 0.98678 1.21475 0.93530 0.97784 1.01471 0.92980 0.80233 0.91980 0.95875 0.83213 0.89752 0.91466 0.90782 0.87849 0.91103 0.91143 0.92049 0.90737 0.90935 0.91952 0.92294 0.91822 0.92414 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.15 12.84 21.45 0.28 -53.87 16 2 C 0.03 1.49 5.40 84.65 0.46 1.95 16 3 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 7 C -0.59 -32.37 8.76 25.60 0.22 -32.14 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.23 12.07 3.10 29.85 0.09 12.16 16 10 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 11 O -0.58 -29.49 12.07 -148.98 -1.80 -31.28 16 12 C 0.06 2.29 5.17 86.30 0.45 2.74 16 13 N -0.68 -24.19 5.35 -486.72 -2.60 -26.79 16 14 C 0.06 1.61 2.94 45.85 0.13 1.74 16 15 H 0.05 1.45 7.59 -2.39 -0.02 1.43 16 16 C -0.15 -3.88 6.27 31.92 0.20 -3.68 16 17 C 0.05 1.08 7.66 72.67 0.56 1.63 16 18 O -0.37 -9.99 9.70 -148.98 -1.45 -11.43 16 19 C 0.12 2.99 0.71 -10.65 -0.01 2.98 16 20 C -0.13 -2.69 4.65 30.53 0.14 -2.55 16 21 C -0.11 -2.03 5.80 30.61 0.18 -1.86 16 22 C -0.12 -2.24 5.91 30.59 0.18 -2.06 16 23 C -0.11 -2.63 5.80 30.61 0.18 -2.45 16 24 C -0.10 -2.87 3.74 30.53 0.11 -2.76 16 25 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 26 H 0.35 15.79 9.04 -74.05 -0.67 15.12 16 27 H 0.06 2.54 7.71 -2.39 -0.02 2.52 16 28 H 0.02 0.90 8.12 -2.39 -0.02 0.88 16 29 H 0.35 12.39 5.63 -89.69 -0.51 11.88 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.08 8.07 -2.38 -0.02 2.06 16 32 H 0.07 1.33 8.11 -2.39 -0.02 1.31 16 33 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 36 H 0.06 1.24 7.76 -2.39 -0.02 1.22 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.06 1.46 7.76 -2.39 -0.02 1.44 16 41 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.89 7.73 -2.39 -0.02 1.87 16 43 H 0.07 1.89 6.77 -2.38 -0.02 1.87 16 Total: -1.00 -63.78 330.32 -0.83 -64.61 By element: Atomic # 1 Polarization: 38.00 SS G_CDS: -0.19 Total: 37.81 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 2.90 Total: -24.29 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -2.33 Total: -80.66 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -3.24 Total: -42.72 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -63.78 -0.83 -64.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933872998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.391 kcal (2) G-P(sol) polarization free energy of solvation -63.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds