Wall clock time and date at job start Mon Mar 30 2020 01:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46652 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99543 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46715 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47322 * 64.99927 * 12 11 10 14 14 C 1.46901 * 111.00307 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.47382 * 325.69981 * 14 13 12 16 16 C 1.54951 * 110.53340 * 88.36233 * 14 13 12 17 17 C 1.55035 * 102.10937 * 139.45887 * 16 14 13 18 18 O 1.44516 * 103.59086 * 323.31731 * 17 16 14 19 19 C 1.43467 * 106.85049 * 39.53850 * 18 17 16 20 20 C 1.53745 * 110.55784 * 94.34908 * 19 18 17 21 21 C 1.55007 * 104.06243 * 97.49811 * 20 19 18 22 22 C 1.54941 * 102.81686 * 37.48714 * 21 20 19 23 23 C 1.53337 * 110.75049 * 212.96409 * 19 18 17 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 26 26 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 27 27 H 1.08995 * 109.47112 * 299.99963 * 11 10 9 28 28 H 1.08995 * 109.47212 * 60.00282 * 11 10 9 29 29 H 1.09003 * 109.46840 * 185.00307 * 12 11 10 30 30 H 1.09000 * 109.47184 * 304.99791 * 12 11 10 31 31 H 1.00903 * 111.00389 * 303.95575 * 13 12 11 32 32 H 1.09001 * 110.90046 * 257.66356 * 16 14 13 33 33 H 1.08996 * 110.90332 * 21.24857 * 16 14 13 34 34 H 1.09004 * 110.59995 * 81.84775 * 17 16 14 35 35 H 1.09000 * 110.59409 * 204.63885 * 17 16 14 36 36 H 1.09003 * 110.50885 * 216.13915 * 20 19 18 37 37 H 1.09002 * 110.51383 * 338.84602 * 20 19 18 38 38 H 1.08998 * 110.74152 * 279.16130 * 21 20 19 39 39 H 1.09001 * 110.74898 * 155.82374 * 21 20 19 40 40 H 1.08995 * 110.48319 * 203.67445 * 22 21 20 41 41 H 1.09008 * 110.47578 * 81.03986 * 22 21 20 42 42 H 1.08994 * 110.06958 * 358.44202 * 23 19 18 43 43 H 1.08999 * 110.07033 * 119.92529 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 7 3.4072 -5.8879 1.2564 14 6 4.4580 -6.9139 1.2929 15 1 4.1266 -7.8173 0.7809 16 6 5.7646 -6.3766 0.6563 17 6 6.8476 -6.9414 1.6111 18 8 6.2274 -6.8607 2.9139 19 6 4.8517 -7.2303 2.7431 20 6 4.6552 -8.7276 3.0318 21 6 4.1539 -8.7659 4.4981 22 6 3.2349 -7.5211 4.5798 23 6 3.9567 -6.4599 3.7212 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 0.8902 26 1 0.6248 -2.5571 -0.8897 27 1 0.9447 -4.9827 0.8897 28 1 0.9453 -4.9822 -0.8903 29 1 2.1822 -6.9375 -0.0894 30 1 3.3223 -5.7956 -0.8407 31 1 3.7957 -4.9670 1.3945 32 1 5.8943 -6.7666 -0.3532 33 1 5.7770 -5.2867 0.6552 34 1 7.0785 -7.9766 1.3596 35 1 7.7485 -6.3289 1.5741 36 1 3.9071 -9.1508 2.3613 37 1 5.6004 -9.2622 2.9371 38 1 4.9882 -8.6759 5.1937 39 1 3.5874 -9.6773 4.6889 40 1 3.1448 -7.1806 5.6112 41 1 2.2524 -7.7446 4.1636 42 1 4.5646 -5.8155 4.3562 43 1 3.2284 -5.8637 3.1716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934382234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:35 Heat of formation + Delta-G solvation = -100.410164 kcal Electronic energy + Delta-G solvation = -21400.715037 eV Core-core repulsion = 18252.345767 eV Total energy + Delta-G solvation = -3148.369270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.47934 -37.12614 -36.04904 -35.20576 -32.73662 -31.07661 -29.37462 -28.66930 -27.58523 -26.34556 -23.81285 -22.39123 -21.86108 -21.60105 -20.38449 -19.29704 -16.81214 -16.38632 -16.22635 -15.70489 -15.46180 -15.08915 -14.85011 -14.41334 -14.13429 -13.92699 -13.80215 -13.23451 -12.91629 -12.68668 -12.22699 -12.10486 -11.70677 -11.65362 -11.31555 -11.16438 -11.08314 -10.99207 -10.82168 -10.79497 -10.76060 -10.74068 -10.44894 -10.28269 -10.02235 -9.58083 -9.10967 -8.85056 -8.19606 -8.19275 -6.12232 -4.13996 3.28352 3.34985 3.41035 3.82823 4.10205 4.33836 4.49540 4.69913 4.73260 4.81910 4.92885 4.99398 5.04445 5.19550 5.24534 5.28075 5.47335 5.54695 5.58543 5.62576 5.64551 5.70337 5.72114 5.78910 5.89927 5.91842 6.02275 6.03160 6.06609 6.16171 6.17233 6.32089 6.42865 6.73764 7.03982 7.09058 7.15457 7.41977 7.54662 7.77776 8.13628 8.55242 8.99168 9.51061 10.99301 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.003888 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.938822 B = 7199.266682 C = 7355.783121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.066 0.934 9 C 0.197 3.803 10 O -0.399 6.399 11 C 0.061 3.939 12 C 0.063 3.937 13 N -0.669 5.669 14 C 0.065 3.935 15 H 0.088 0.912 16 C -0.188 4.188 17 C 0.048 3.952 18 O -0.365 6.365 19 C 0.107 3.893 20 C -0.133 4.133 21 C -0.122 4.122 22 C -0.120 4.120 23 C -0.129 4.129 24 H 0.263 0.737 25 H 0.007 0.993 26 H 0.004 0.996 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.360 0.640 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.927 -18.153 4.156 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.123 3.877 10 O -0.319 6.319 11 C -0.017 4.017 12 C -0.065 4.065 13 N -0.301 5.301 14 C -0.046 4.046 15 H 0.107 0.893 16 C -0.227 4.227 17 C -0.030 4.030 18 O -0.284 6.284 19 C 0.067 3.933 20 C -0.171 4.171 21 C -0.159 4.159 22 C -0.157 4.157 23 C -0.167 4.167 24 H 0.073 0.927 25 H 0.024 0.976 26 H 0.021 0.979 27 H 0.065 0.935 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.182 0.818 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 8.595 -18.294 4.689 20.749 hybrid contribution 0.644 1.114 -0.958 1.604 sum 9.238 -17.180 3.731 19.860 Atomic orbital electron populations 1.69972 1.06106 1.27054 1.50580 1.24946 0.94960 0.99426 0.95132 0.86299 0.80006 0.82658 0.77637 1.19514 1.20872 1.20795 1.21085 0.94019 0.89392 1.50772 0.91595 1.20178 0.88686 0.83441 0.95394 1.87789 1.35798 1.13120 1.95239 1.22295 0.94485 0.85279 0.99596 1.22015 0.95808 0.98097 0.90611 1.60607 1.26070 1.08979 1.34453 1.22896 0.90322 0.96283 0.95081 0.89350 1.23928 0.96449 1.02485 0.99840 1.23427 0.96393 0.99911 0.83221 1.88938 1.21997 1.89231 1.28256 1.22381 0.82161 0.93841 0.94874 1.22780 1.01110 0.95644 0.97544 1.22484 0.99130 0.98120 0.96190 1.22329 0.98647 0.95101 0.99642 1.22456 0.98986 0.98365 0.96870 0.92700 0.97562 0.97862 0.93501 0.94139 0.90676 0.94611 0.81814 0.90423 0.89816 0.92565 0.89247 0.90995 0.91528 0.91642 0.92004 0.91989 0.91551 0.91681 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.82 13.29 55.43 0.74 -26.09 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.51 -15.04 9.43 -34.44 -0.32 -15.36 16 8 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 9 C 0.20 5.36 5.69 36.00 0.20 5.56 16 10 O -0.40 -9.30 9.85 -35.23 -0.35 -9.64 16 11 C 0.06 1.10 6.28 37.16 0.23 1.34 16 12 C 0.06 0.90 5.96 -3.83 -0.02 0.88 16 13 N -0.67 -9.35 3.75 -105.33 -0.40 -9.75 16 14 C 0.07 0.78 2.94 -66.38 -0.20 0.58 16 15 H 0.09 0.96 7.03 -51.93 -0.36 0.59 16 16 C -0.19 -2.11 6.82 -24.63 -0.17 -2.28 16 17 C 0.05 0.51 7.71 38.23 0.29 0.80 16 18 O -0.37 -4.90 10.79 -35.23 -0.38 -5.28 16 19 C 0.11 1.31 1.07 -89.76 -0.10 1.22 16 20 C -0.13 -1.39 6.04 -25.28 -0.15 -1.54 16 21 C -0.12 -1.24 6.91 -24.65 -0.17 -1.41 16 22 C -0.12 -1.34 6.84 -24.97 -0.17 -1.51 16 23 C -0.13 -1.69 6.14 -25.82 -0.16 -1.85 16 24 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.36 5.81 7.58 -39.29 -0.30 5.51 16 32 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.08 7.60 -51.93 -0.39 0.68 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.70 7.45 -51.93 -0.39 0.31 16 37 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.06 0.91 7.97 -51.93 -0.41 0.49 16 43 H 0.12 1.72 5.46 -51.93 -0.28 1.44 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -30.41 338.89 -8.72 -39.13 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.60 Total: 1.79 kcal Atomic # 6 Polarization: -11.21 SS G_CDS: -0.82 Total: -12.04 kcal Atomic # 7 Polarization: -36.18 SS G_CDS: 0.34 Total: -35.84 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.73 Total: -14.93 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.41 -8.72 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934382234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.281 kcal (2) G-P(sol) polarization free energy of solvation -30.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds