Wall clock time and date at job start Mon Mar 30 2020 01:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 O 1.42908 * 109.46652 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99543 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46715 * 180.02562 * 11 10 9 13 13 N 1.46894 * 109.47322 * 64.99927 * 12 11 10 14 14 C 1.46901 * 111.00307 * 179.97438 * 13 12 11 15 15 H 1.09001 * 110.47382 * 325.69981 * 14 13 12 16 16 C 1.54951 * 110.53340 * 88.36233 * 14 13 12 17 17 C 1.55035 * 102.10937 * 139.45887 * 16 14 13 18 18 O 1.44516 * 103.59086 * 323.31731 * 17 16 14 19 19 C 1.43467 * 106.85049 * 39.53850 * 18 17 16 20 20 C 1.53745 * 110.55784 * 94.34908 * 19 18 17 21 21 C 1.55007 * 104.06243 * 97.49811 * 20 19 18 22 22 C 1.54941 * 102.81686 * 37.48714 * 21 20 19 23 23 C 1.53337 * 110.75049 * 212.96409 * 19 18 17 24 24 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.47177 * 299.99952 * 9 7 2 26 26 H 1.08997 * 109.47039 * 60.00401 * 9 7 2 27 27 H 1.08995 * 109.47112 * 299.99963 * 11 10 9 28 28 H 1.08995 * 109.47212 * 60.00282 * 11 10 9 29 29 H 1.09003 * 109.46840 * 185.00307 * 12 11 10 30 30 H 1.09000 * 109.47184 * 304.99791 * 12 11 10 31 31 H 1.00903 * 111.00389 * 303.95575 * 13 12 11 32 32 H 1.09001 * 110.90046 * 257.66356 * 16 14 13 33 33 H 1.08996 * 110.90332 * 21.24857 * 16 14 13 34 34 H 1.09004 * 110.59995 * 81.84775 * 17 16 14 35 35 H 1.09000 * 110.59409 * 204.63885 * 17 16 14 36 36 H 1.09003 * 110.50885 * 216.13915 * 20 19 18 37 37 H 1.09002 * 110.51383 * 338.84602 * 20 19 18 38 38 H 1.08998 * 110.74152 * 279.16130 * 21 20 19 39 39 H 1.09001 * 110.74898 * 155.82374 * 21 20 19 40 40 H 1.08995 * 110.48319 * 203.67445 * 22 21 20 41 41 H 1.09008 * 110.47578 * 81.03986 * 22 21 20 42 42 H 1.08994 * 110.06958 * 358.44202 * 23 19 18 43 43 H 1.08999 * 110.07033 * 119.92529 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 8 2.1797 -3.5853 0.0005 11 6 1.5651 -4.8754 0.0000 12 6 2.6481 -5.9562 0.0006 13 7 3.4072 -5.8879 1.2564 14 6 4.4580 -6.9139 1.2929 15 1 4.1266 -7.8173 0.7809 16 6 5.7646 -6.3766 0.6563 17 6 6.8476 -6.9414 1.6111 18 8 6.2274 -6.8607 2.9139 19 6 4.8517 -7.2303 2.7431 20 6 4.6552 -8.7276 3.0318 21 6 4.1539 -8.7659 4.4981 22 6 3.2349 -7.5211 4.5798 23 6 3.9567 -6.4599 3.7212 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 0.8902 26 1 0.6248 -2.5571 -0.8897 27 1 0.9447 -4.9827 0.8897 28 1 0.9453 -4.9822 -0.8903 29 1 2.1822 -6.9375 -0.0894 30 1 3.3223 -5.7956 -0.8407 31 1 3.7957 -4.9670 1.3945 32 1 5.8943 -6.7666 -0.3532 33 1 5.7770 -5.2867 0.6552 34 1 7.0785 -7.9766 1.3596 35 1 7.7485 -6.3289 1.5741 36 1 3.9071 -9.1508 2.3613 37 1 5.6004 -9.2622 2.9371 38 1 4.9882 -8.6759 5.1937 39 1 3.5874 -9.6773 4.6889 40 1 3.1448 -7.1806 5.6112 41 1 2.2524 -7.7446 4.1636 42 1 4.5646 -5.8155 4.3562 43 1 3.2284 -5.8637 3.1716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934382234.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:35 Heat of formation + Delta-G solvation = -119.705307 kcal Electronic energy + Delta-G solvation = -21401.551737 eV Core-core repulsion = 18252.345767 eV Total energy + Delta-G solvation = -3149.205970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.41599 -38.79310 -36.94258 -36.49659 -34.87913 -32.23763 -30.46571 -29.56012 -29.33050 -27.82863 -24.73383 -24.52038 -22.94787 -22.75536 -21.26378 -20.25831 -18.67437 -17.65958 -17.48422 -17.18059 -16.86259 -16.37506 -16.03332 -15.81630 -15.49977 -15.18908 -14.88335 -14.71790 -13.98100 -13.79153 -13.71608 -13.34243 -13.16309 -12.89057 -12.79253 -12.55640 -12.50652 -12.37047 -12.08462 -11.98183 -11.92199 -11.75557 -11.67114 -11.44347 -11.26240 -11.25783 -10.88211 -10.49721 -10.23084 -9.27685 -8.32974 -6.45076 1.39398 1.40644 1.55061 2.33863 2.93972 3.01183 3.03351 3.22664 3.60195 3.79584 3.83454 3.95950 4.09443 4.16899 4.23529 4.32041 4.37681 4.44422 4.57134 4.65928 4.73813 4.74493 4.78813 4.83374 4.85488 4.89711 4.93891 4.99096 5.02262 5.07860 5.15946 5.17143 5.18945 5.28359 5.53202 5.54277 5.67769 5.95382 6.08985 6.11319 6.32465 6.53041 6.81620 7.27018 8.79553 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.023486 B = 0.003888 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.938822 B = 7199.266682 C = 7355.783121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.265 1.265 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.547 4.547 8 H 0.061 0.939 9 C 0.212 3.788 10 O -0.409 6.409 11 C 0.053 3.947 12 C 0.075 3.925 13 N -0.674 5.674 14 C 0.066 3.934 15 H 0.108 0.892 16 C -0.185 4.185 17 C 0.046 3.954 18 O -0.390 6.390 19 C 0.104 3.896 20 C -0.128 4.128 21 C -0.118 4.118 22 C -0.118 4.118 23 C -0.133 4.133 24 H 0.271 0.729 25 H -0.015 1.015 26 H -0.015 1.015 27 H 0.043 0.957 28 H 0.048 0.952 29 H 0.108 0.892 30 H 0.036 0.964 31 H 0.345 0.655 32 H 0.095 0.905 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.080 0.920 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.045 0.955 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.895 -19.260 3.793 21.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.584 4.584 8 H 0.079 0.921 9 C 0.137 3.863 10 O -0.329 6.329 11 C -0.024 4.024 12 C -0.054 4.054 13 N -0.305 5.305 14 C -0.044 4.044 15 H 0.126 0.874 16 C -0.225 4.225 17 C -0.030 4.030 18 O -0.310 6.310 19 C 0.064 3.936 20 C -0.166 4.166 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.171 4.171 24 H 0.079 0.921 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.126 0.874 30 H 0.054 0.946 31 H 0.164 0.836 32 H 0.114 0.886 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.564 -19.439 4.323 22.091 hybrid contribution 0.316 1.403 -0.829 1.660 sum 9.879 -18.036 3.494 20.859 Atomic orbital electron populations 1.70074 1.07744 1.28559 1.50585 1.25938 0.95924 1.03328 0.93948 0.85158 0.78653 0.77465 0.78260 1.18890 1.19628 1.19740 1.21412 0.94045 0.90881 1.52090 0.92073 1.19778 0.88548 0.84620 0.93381 1.87754 1.35504 1.14392 1.95217 1.22621 0.96157 0.83839 0.99788 1.21976 0.94812 0.97855 0.90754 1.60639 1.27010 1.08576 1.34246 1.22986 0.89971 0.96184 0.95290 0.87372 1.23884 0.96454 1.01132 1.00985 1.23588 0.96197 1.01322 0.81903 1.88910 1.22617 1.89619 1.29816 1.22455 0.81571 0.94926 0.94599 1.22769 1.01892 0.94119 0.97826 1.22476 0.98855 0.98163 0.96071 1.22320 0.98792 0.95139 0.99338 1.22426 0.98808 0.98783 0.97098 0.92059 0.99735 0.99723 0.93828 0.93365 0.87413 0.94586 0.83624 0.88641 0.92079 0.90372 0.88596 0.89717 0.90778 0.92100 0.90150 0.91840 0.91308 0.93591 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 2 C 0.01 0.41 5.46 84.66 0.46 0.88 16 3 Si 0.98 44.58 29.54 68.60 2.03 46.60 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -32.62 9.43 25.60 0.24 -32.38 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 11.92 5.69 71.23 0.41 12.32 16 10 O -0.41 -19.51 9.85 -148.98 -1.47 -20.98 16 11 C 0.05 1.91 6.28 71.98 0.45 2.37 16 12 C 0.07 2.02 5.96 86.30 0.51 2.54 16 13 N -0.67 -18.54 3.75 -487.14 -1.83 -20.37 16 14 C 0.07 1.47 2.94 45.77 0.13 1.60 16 15 H 0.11 1.98 7.03 -2.39 -0.02 1.97 16 16 C -0.19 -3.92 6.82 31.96 0.22 -3.71 16 17 C 0.05 0.92 7.71 72.68 0.56 1.48 16 18 O -0.39 -10.16 10.79 -148.98 -1.61 -11.76 16 19 C 0.10 2.43 1.07 -10.24 -0.01 2.42 16 20 C -0.13 -2.37 6.04 31.53 0.19 -2.18 16 21 C -0.12 -2.17 6.91 31.94 0.22 -1.95 16 22 C -0.12 -2.55 6.84 31.74 0.22 -2.34 16 23 C -0.13 -3.52 6.14 31.19 0.19 -3.33 16 24 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 25 H -0.02 -0.90 8.14 -2.39 -0.02 -0.91 16 26 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.11 2.26 8.08 -2.39 -0.02 2.24 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.34 11.41 7.58 -89.69 -0.68 10.73 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.06 1.57 7.60 -2.39 -0.02 1.56 16 34 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 35 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 1.35 7.45 -2.39 -0.02 1.33 16 37 H 0.07 1.27 8.07 -2.39 -0.02 1.25 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 42 H 0.05 1.34 7.97 -2.39 -0.02 1.32 16 43 H 0.10 3.04 5.46 -2.39 -0.01 3.03 16 Total: -1.00 -66.01 338.89 1.50 -64.51 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.29 Total: 20.10 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 3.80 Total: -22.28 kcal Atomic # 7 Polarization: -74.66 SS G_CDS: -1.54 Total: -76.21 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -3.07 Total: -32.74 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.01 1.50 -64.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934382234.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.193 kcal (2) G-P(sol) polarization free energy of solvation -66.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds