Wall clock time and date at job start Mon Mar 30 2020 01:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09002 * 109.45253 * 160.91002 * 3 2 1 5 5 C 1.53034 * 109.46386 * 280.88623 * 3 2 1 6 6 C 1.53120 * 109.28106 * 179.20150 * 5 3 2 7 7 C 1.53129 * 109.15446 * 302.33935 * 6 5 3 8 8 C 1.53040 * 109.27750 * 57.65657 * 7 6 5 9 9 N 1.46843 * 109.52281 * 300.81970 * 8 7 6 10 10 C 1.46896 * 111.00044 * 185.84244 * 9 8 7 11 11 C 1.50697 * 109.47135 * 45.78612 * 10 9 8 12 12 C 1.38633 * 119.74898 * 90.00647 * 11 10 9 13 13 C 1.37624 * 120.24962 * 179.97438 * 12 11 10 14 14 C 1.40717 * 119.74249 * 359.97438 * 13 12 11 15 15 C 1.41393 * 120.24000 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99954 * 335.85650 * 15 14 13 17 17 C 1.39941 * 119.99900 * 156.13792 * 15 14 13 18 18 N 1.30825 * 120.00037 * 341.49157 * 17 15 14 19 19 Si 1.86805 * 120.00268 * 161.49631 * 17 15 14 20 20 H 1.48500 * 109.46949 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47148 * 119.99813 * 19 17 15 22 22 H 1.48502 * 109.47274 * 240.00081 * 19 17 15 23 23 C 1.40712 * 119.51086 * 0.25766 * 14 13 12 24 24 C 1.37613 * 119.74559 * 359.48682 * 23 14 13 25 25 H 4.18714 * 15.04322 * 359.97438 * 4 2 1 26 26 H 1.09006 * 109.49907 * 299.13324 * 5 3 2 27 27 H 1.08992 * 109.50743 * 59.25160 * 5 3 2 28 28 H 1.08997 * 109.52761 * 62.24260 * 6 5 3 29 29 H 1.08999 * 109.52439 * 182.44087 * 6 5 3 30 30 H 1.08997 * 109.49945 * 177.59726 * 7 6 5 31 31 H 1.09001 * 109.50304 * 297.71172 * 7 6 5 32 32 H 1.08995 * 109.45694 * 180.80325 * 8 7 6 33 33 H 1.08999 * 109.46088 * 60.83634 * 8 7 6 34 34 H 1.09009 * 109.46832 * 285.78763 * 10 9 8 35 35 H 1.09001 * 109.47426 * 165.78866 * 10 9 8 36 36 H 1.07997 * 119.87679 * 359.95065 * 12 11 10 37 37 H 1.07994 * 120.12524 * 180.02562 * 13 12 11 38 38 H 0.97001 * 119.99741 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.12470 * 179.75010 * 23 14 13 40 40 H 1.08006 * 119.87462 * 180.22771 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0086 0.9721 -0.3361 5 6 3.1560 -0.2716 1.4169 6 6 4.6871 -0.2898 1.4084 7 6 5.1714 -1.3542 0.4198 8 6 4.6029 -1.0506 -0.9683 9 7 3.1358 -1.0451 -0.9072 10 6 2.5537 -0.8943 -2.2475 11 6 3.2559 -1.8200 -3.2072 12 6 2.7773 -3.1074 -3.3956 13 6 3.4102 -3.9612 -4.2699 14 6 4.5469 -3.5228 -4.9742 15 6 5.2056 -4.3914 -5.8746 16 1 5.1150 -5.4612 -5.7569 17 6 5.9797 -3.8650 -6.9148 18 7 5.8177 -2.6210 -7.2859 19 14 7.2445 -4.9386 -7.7735 20 1 7.2331 -6.2956 -7.1705 21 1 6.9130 -5.0353 -9.2177 22 1 8.5934 -4.3381 -7.6143 23 6 5.0265 -2.2156 -4.7712 24 6 4.3746 -1.3773 -3.8960 25 1 -1.0500 -0.0011 -0.0001 26 1 2.8053 0.5133 2.0870 27 1 2.7825 -1.2367 1.7590 28 1 5.0614 0.6875 1.1036 29 1 5.0542 -0.5263 2.4071 30 1 6.2605 -1.3428 0.3775 31 1 4.8296 -2.3364 0.7463 32 1 4.9343 -1.8147 -1.6714 33 1 4.9564 -0.0743 -1.2998 34 1 2.6747 0.1361 -2.5823 35 1 1.4930 -1.1430 -2.2131 36 1 1.9048 -3.4416 -2.8541 37 1 3.0355 -4.9635 -4.4155 38 1 6.3545 -2.2561 -8.0067 39 1 5.9005 -1.8702 -5.3035 40 1 4.7388 -0.3723 -3.7414 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934514605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:30 Heat of formation + Delta-G solvation = 65.052557 kcal Electronic energy + Delta-G solvation = -19988.962324 eV Core-core repulsion = 17155.076976 eV Total energy + Delta-G solvation = -2833.885348 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.30315 -37.37534 -34.25598 -33.53501 -32.79435 -30.09687 -29.79234 -29.26081 -26.83304 -24.45545 -23.41031 -22.24076 -20.98100 -19.80495 -19.58233 -18.05510 -17.29360 -15.68567 -15.36169 -15.10121 -14.67575 -14.33592 -14.01382 -13.77524 -13.29385 -13.22315 -12.95688 -12.61582 -12.32437 -11.93439 -11.76315 -11.47161 -11.33482 -11.05940 -10.94611 -10.77240 -10.70804 -10.50895 -10.41856 -10.35999 -10.15530 -9.84481 -9.51829 -9.37537 -9.11227 -7.94721 -7.42146 -7.28168 -6.77811 -4.35052 2.68142 2.89205 2.95315 3.06176 3.08748 3.12089 3.19077 3.92316 4.29580 4.43397 4.71014 4.94239 5.06347 5.12426 5.38866 5.43747 5.70143 5.73887 5.76088 5.83618 5.86403 5.99694 5.99979 6.09174 6.18861 6.22402 6.32724 6.39760 6.43714 6.51940 6.59332 6.95059 7.07226 7.26314 7.37789 7.47325 7.48984 7.62095 7.74274 7.89540 8.05585 8.14300 8.30289 8.63630 8.89459 8.97549 10.16655 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.004306 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.424762 B = 6500.886352 C = 6962.704071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C 0.188 3.812 4 H 0.055 0.945 5 C -0.104 4.104 6 C -0.120 4.120 7 C -0.119 4.119 8 C 0.055 3.945 9 N -0.524 5.524 10 C 0.121 3.879 11 C -0.215 4.215 12 C -0.067 4.067 13 C -0.229 4.229 14 C 0.113 3.887 15 C -0.462 4.462 16 H 0.078 0.922 17 C 0.077 3.923 18 N -0.792 5.792 19 Si 0.906 3.094 20 H -0.260 1.260 21 H -0.275 1.275 22 H -0.272 1.272 23 C -0.167 4.167 24 C -0.093 4.093 25 H 0.216 0.784 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.026 0.974 34 H 0.022 0.978 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.280 0.720 39 H 0.116 0.884 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 5.188 11.672 12.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.164 4.164 3 C 0.081 3.919 4 H 0.073 0.927 5 C -0.142 4.142 6 C -0.158 4.158 7 C -0.157 4.157 8 C -0.072 4.072 9 N -0.249 5.249 10 C -0.005 4.005 11 C -0.217 4.217 12 C -0.086 4.086 13 C -0.249 4.249 14 C 0.111 3.889 15 C -0.492 4.492 16 H 0.096 0.904 17 C -0.141 4.141 18 N -0.417 5.417 19 Si 0.730 3.270 20 H -0.184 1.184 21 H -0.200 1.200 22 H -0.197 1.197 23 C -0.186 4.186 24 C -0.112 4.112 25 H 0.232 0.768 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.119 0.881 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.236 4.914 11.677 12.865 hybrid contribution 0.540 0.433 -0.907 1.141 sum -1.696 5.347 10.770 12.143 Atomic orbital electron populations 1.24800 0.95756 1.01289 1.01021 1.22869 0.94014 0.99661 0.99875 1.18606 0.84312 0.94195 0.94820 0.92725 1.21558 0.95766 1.02536 0.94337 1.21601 0.95081 0.99442 0.99628 1.21644 0.99701 0.99382 0.94955 1.22199 0.86513 1.01088 0.97392 1.62175 1.07656 1.44873 1.10214 1.20739 0.97831 0.96168 0.85738 1.18847 1.01907 0.95841 1.05081 1.20338 0.98012 0.93222 0.97056 1.20964 0.99389 0.99343 1.05188 1.17623 0.89218 0.92224 0.89864 1.19640 1.25300 0.94687 1.09527 0.90415 1.25912 0.96446 0.95224 0.96517 1.69843 1.33695 1.14883 1.23311 0.86306 0.80447 0.81217 0.79036 1.18359 1.20007 1.19702 1.21266 1.01594 0.95331 1.00414 1.20520 0.95808 0.97413 0.97452 0.76761 0.91738 0.90769 0.92326 0.91807 0.91669 0.91114 0.88146 0.95558 0.95958 0.91538 0.89455 0.89105 0.90949 0.86584 0.89973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.70 19.25 29.55 0.57 -2.13 16 2 C -0.16 -2.39 11.25 -37.12 -0.42 -2.81 16 3 C 0.19 2.72 2.26 -70.51 -0.16 2.56 16 4 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.10 -1.26 5.33 -26.65 -0.14 -1.40 16 6 C -0.12 -1.34 6.00 -26.60 -0.16 -1.50 16 7 C -0.12 -1.57 6.09 -26.64 -0.16 -1.74 16 8 C 0.06 0.90 4.57 -3.83 -0.02 0.88 16 9 N -0.52 -8.81 4.62 -231.51 -1.07 -9.88 16 10 C 0.12 2.27 4.80 -4.98 -0.02 2.24 16 11 C -0.22 -4.67 4.14 -104.33 -0.43 -5.11 16 12 C -0.07 -1.53 9.67 -39.66 -0.38 -1.92 16 13 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 14 C 0.11 3.01 5.58 -106.83 -0.60 2.41 16 15 C -0.46 -12.24 9.05 -37.74 -0.34 -12.58 16 16 H 0.08 1.99 7.91 -52.48 -0.42 1.58 16 17 C 0.08 1.92 5.13 -17.34 -0.09 1.83 16 18 N -0.79 -20.40 10.98 55.55 0.61 -19.79 16 19 Si 0.91 18.55 29.60 -169.99 -5.03 13.52 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.17 -4.27 8.70 -38.88 -0.34 -4.61 16 24 C -0.09 -2.13 7.76 -39.66 -0.31 -2.43 16 25 H 0.22 1.93 7.80 -54.09 -0.42 1.51 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 1.92 5.64 -51.93 -0.29 1.63 16 33 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.02 0.41 8.02 -51.92 -0.42 0.00 16 35 H 0.07 1.25 7.30 -51.93 -0.38 0.87 16 36 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 37 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 39 H 0.12 3.08 6.16 -52.49 -0.32 2.76 16 40 H 0.08 1.73 8.06 -52.48 -0.42 1.31 16 LS Contribution 326.33 15.07 4.92 4.92 Total: -1.00 -27.26 326.33 -9.99 -37.25 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.03 Total: 6.32 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: -3.38 Total: -32.34 kcal Atomic # 7 Polarization: -29.21 SS G_CDS: -0.46 Total: -29.67 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.26 -9.99 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934514605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.299 kcal (2) G-P(sol) polarization free energy of solvation -27.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds