Wall clock time and date at job start Mon Mar 30 2020 01:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09002 * 109.45253 * 160.91002 * 3 2 1 5 5 C 1.53034 * 109.46386 * 280.88623 * 3 2 1 6 6 C 1.53120 * 109.28106 * 179.20150 * 5 3 2 7 7 C 1.53129 * 109.15446 * 302.33935 * 6 5 3 8 8 C 1.53040 * 109.27750 * 57.65657 * 7 6 5 9 9 N 1.46843 * 109.52281 * 300.81970 * 8 7 6 10 10 C 1.46896 * 111.00044 * 185.84244 * 9 8 7 11 11 C 1.50697 * 109.47135 * 45.78612 * 10 9 8 12 12 C 1.38633 * 119.74898 * 90.00647 * 11 10 9 13 13 C 1.37624 * 120.24962 * 179.97438 * 12 11 10 14 14 C 1.40717 * 119.74249 * 359.97438 * 13 12 11 15 15 C 1.41393 * 120.24000 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99954 * 335.85650 * 15 14 13 17 17 C 1.39941 * 119.99900 * 156.13792 * 15 14 13 18 18 N 1.30825 * 120.00037 * 341.49157 * 17 15 14 19 19 Si 1.86805 * 120.00268 * 161.49631 * 17 15 14 20 20 H 1.48500 * 109.46949 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47148 * 119.99813 * 19 17 15 22 22 H 1.48502 * 109.47274 * 240.00081 * 19 17 15 23 23 C 1.40712 * 119.51086 * 0.25766 * 14 13 12 24 24 C 1.37613 * 119.74559 * 359.48682 * 23 14 13 25 25 H 4.18714 * 15.04322 * 359.97438 * 4 2 1 26 26 H 1.09006 * 109.49907 * 299.13324 * 5 3 2 27 27 H 1.08992 * 109.50743 * 59.25160 * 5 3 2 28 28 H 1.08997 * 109.52761 * 62.24260 * 6 5 3 29 29 H 1.08999 * 109.52439 * 182.44087 * 6 5 3 30 30 H 1.08997 * 109.49945 * 177.59726 * 7 6 5 31 31 H 1.09001 * 109.50304 * 297.71172 * 7 6 5 32 32 H 1.08995 * 109.45694 * 180.80325 * 8 7 6 33 33 H 1.08999 * 109.46088 * 60.83634 * 8 7 6 34 34 H 1.09009 * 109.46832 * 285.78763 * 10 9 8 35 35 H 1.09001 * 109.47426 * 165.78866 * 10 9 8 36 36 H 1.07997 * 119.87679 * 359.95065 * 12 11 10 37 37 H 1.07994 * 120.12524 * 180.02562 * 13 12 11 38 38 H 0.97001 * 119.99741 * 179.97438 * 18 17 15 39 39 H 1.08000 * 120.12470 * 179.75010 * 23 14 13 40 40 H 1.08006 * 119.87462 * 180.22771 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0086 0.9721 -0.3361 5 6 3.1560 -0.2716 1.4169 6 6 4.6871 -0.2898 1.4084 7 6 5.1714 -1.3542 0.4198 8 6 4.6029 -1.0506 -0.9683 9 7 3.1358 -1.0451 -0.9072 10 6 2.5537 -0.8943 -2.2475 11 6 3.2559 -1.8200 -3.2072 12 6 2.7773 -3.1074 -3.3956 13 6 3.4102 -3.9612 -4.2699 14 6 4.5469 -3.5228 -4.9742 15 6 5.2056 -4.3914 -5.8746 16 1 5.1150 -5.4612 -5.7569 17 6 5.9797 -3.8650 -6.9148 18 7 5.8177 -2.6210 -7.2859 19 14 7.2445 -4.9386 -7.7735 20 1 7.2331 -6.2956 -7.1705 21 1 6.9130 -5.0353 -9.2177 22 1 8.5934 -4.3381 -7.6143 23 6 5.0265 -2.2156 -4.7712 24 6 4.3746 -1.3773 -3.8960 25 1 -1.0500 -0.0011 -0.0001 26 1 2.8053 0.5133 2.0870 27 1 2.7825 -1.2367 1.7590 28 1 5.0614 0.6875 1.1036 29 1 5.0542 -0.5263 2.4071 30 1 6.2605 -1.3428 0.3775 31 1 4.8296 -2.3364 0.7463 32 1 4.9343 -1.8147 -1.6714 33 1 4.9564 -0.0743 -1.2998 34 1 2.6747 0.1361 -2.5823 35 1 1.4930 -1.1430 -2.2131 36 1 1.9048 -3.4416 -2.8541 37 1 3.0355 -4.9635 -4.4155 38 1 6.3545 -2.2561 -8.0067 39 1 5.9005 -1.8702 -5.3035 40 1 4.7388 -0.3723 -3.7414 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934514605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:30 Heat of formation + Delta-G solvation = 51.940685 kcal Electronic energy + Delta-G solvation = -19989.530898 eV Core-core repulsion = 17155.076976 eV Total energy + Delta-G solvation = -2834.453921 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.63639 -39.08908 -35.94418 -34.67091 -34.22221 -31.67580 -31.21463 -30.94686 -28.47903 -26.03052 -24.50948 -23.73116 -22.81112 -21.50040 -20.75450 -19.22649 -19.10017 -17.19641 -16.83691 -16.52576 -16.07187 -15.72228 -15.48839 -15.21659 -14.83961 -14.57500 -14.20502 -14.14181 -13.83547 -13.59678 -13.42923 -13.05527 -12.71147 -12.69052 -12.39974 -12.36833 -12.07183 -11.81914 -11.64461 -11.55857 -11.42489 -11.27883 -11.16637 -10.97193 -10.88206 -9.39873 -9.30245 -9.09396 -8.64996 -6.33335 0.91127 1.14862 1.37978 1.47901 1.53375 1.83049 1.93157 2.20665 2.67947 3.19594 3.43979 3.78333 3.93227 4.02653 4.06996 4.22670 4.29678 4.34602 4.43163 4.52282 4.60235 4.64825 4.80000 4.87255 4.90939 5.00933 5.03718 5.08280 5.15633 5.16502 5.21914 5.33592 5.36781 5.46275 5.48746 5.70150 5.93970 6.09597 6.09692 6.24133 6.29118 6.38745 6.69296 6.72809 6.94156 7.03142 8.32164 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029990 B = 0.004306 C = 0.004020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.424762 B = 6500.886352 C = 6962.704071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.211 4.211 3 C 0.187 3.813 4 H 0.056 0.944 5 C -0.099 4.099 6 C -0.114 4.114 7 C -0.115 4.115 8 C 0.057 3.943 9 N -0.531 5.531 10 C 0.130 3.870 11 C -0.201 4.201 12 C -0.072 4.072 13 C -0.244 4.244 14 C 0.083 3.917 15 C -0.501 4.501 16 H 0.074 0.926 17 C 0.037 3.963 18 N -0.825 5.825 19 Si 0.981 3.019 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.263 1.263 23 C -0.187 4.187 24 C -0.090 4.090 25 H 0.248 0.752 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.027 0.973 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.288 0.712 39 H 0.100 0.900 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 5.918 13.196 14.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.211 4.211 3 C 0.079 3.921 4 H 0.074 0.926 5 C -0.137 4.137 6 C -0.151 4.151 7 C -0.153 4.153 8 C -0.071 4.071 9 N -0.256 5.256 10 C 0.003 3.997 11 C -0.202 4.202 12 C -0.090 4.090 13 C -0.264 4.264 14 C 0.081 3.919 15 C -0.530 4.530 16 H 0.092 0.908 17 C -0.178 4.178 18 N -0.451 5.451 19 Si 0.801 3.199 20 H -0.182 1.182 21 H -0.190 1.190 22 H -0.188 1.188 23 C -0.207 4.207 24 C -0.108 4.108 25 H 0.264 0.736 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.605 5.653 13.219 14.611 hybrid contribution 0.509 0.291 -1.278 1.406 sum -2.096 5.945 11.940 13.502 Atomic orbital electron populations 1.25663 0.96629 0.99255 0.99084 1.23159 0.94657 1.01549 1.01737 1.18697 0.84779 0.93250 0.95342 0.92645 1.21556 0.96218 1.02815 0.93074 1.21584 0.94472 0.98962 1.00104 1.21618 1.00296 0.99799 0.93598 1.22129 0.86447 0.99860 0.98633 1.62120 1.07818 1.46476 1.09184 1.20593 0.97549 0.95223 0.86307 1.19177 1.00817 0.95904 1.04328 1.20584 0.98439 0.93367 0.96642 1.21138 0.99411 1.00020 1.05832 1.17945 0.90221 0.92943 0.90838 1.19864 1.27561 0.94621 1.10980 0.90820 1.26743 0.97744 0.96584 0.96693 1.69886 1.34634 1.16479 1.24062 0.85185 0.77635 0.79101 0.77943 1.18231 1.19004 1.18775 1.21216 1.01908 0.95837 1.01721 1.20668 0.95832 0.97725 0.96608 0.73562 0.89639 0.91578 0.91487 0.89509 0.90524 0.91950 0.91658 0.95494 0.95764 0.91352 0.87428 0.88760 0.90129 0.88213 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.28 19.25 74.32 1.43 -2.85 16 2 C -0.21 -5.69 11.25 31.12 0.35 -5.34 16 3 C 0.19 5.04 2.26 43.13 0.10 5.14 16 4 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 5 C -0.10 -2.13 5.33 30.65 0.16 -1.97 16 6 C -0.11 -2.23 6.00 30.68 0.18 -2.04 16 7 C -0.12 -2.88 6.09 30.65 0.19 -2.70 16 8 C 0.06 1.81 4.57 86.33 0.39 2.21 16 9 N -0.53 -17.28 4.62 -886.36 -4.09 -21.37 16 10 C 0.13 4.74 4.80 85.56 0.41 5.15 16 11 C -0.20 -8.73 4.14 -19.68 -0.08 -8.81 16 12 C -0.07 -3.27 9.67 22.22 0.21 -3.06 16 13 C -0.24 -12.43 9.80 22.73 0.22 -12.21 16 14 C 0.08 4.58 5.58 -21.29 -0.12 4.46 16 15 C -0.50 -27.59 9.05 23.46 0.21 -27.38 16 16 H 0.07 3.94 7.91 -2.91 -0.02 3.92 16 17 C 0.04 1.90 5.13 85.26 0.44 2.34 16 18 N -0.82 -43.64 10.98 21.83 0.24 -43.40 16 19 Si 0.98 38.57 29.60 68.60 2.03 40.60 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 21 H -0.27 -9.96 7.11 99.48 0.71 -9.25 16 22 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 23 C -0.19 -9.98 8.70 22.73 0.20 -9.78 16 24 C -0.09 -4.17 7.76 22.22 0.17 -4.00 16 25 H 0.25 3.48 7.80 -4.42 -0.03 3.45 16 26 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 2.54 5.64 -2.39 -0.01 2.53 16 33 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.02 0.87 8.02 -2.38 -0.02 0.85 16 35 H 0.07 2.47 7.30 -2.39 -0.02 2.45 16 36 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 37 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.29 13.70 8.30 -92.71 -0.77 12.93 16 39 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 40 H 0.10 4.16 8.06 -2.91 -0.02 4.14 16 Total: -1.00 -60.45 326.33 3.65 -56.79 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: 1.00 Total: 28.21 kcal Atomic # 6 Polarization: -65.31 SS G_CDS: 4.47 Total: -60.84 kcal Atomic # 7 Polarization: -60.91 SS G_CDS: -3.85 Total: -64.77 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -60.45 3.65 -56.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934514605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.736 kcal (2) G-P(sol) polarization free energy of solvation -60.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds