Wall clock time and date at job start Mon Mar 30 2020 01:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09001 * 109.45541 * 332.79158 * 3 2 1 5 5 C 1.53040 * 109.46069 * 212.81673 * 3 2 1 6 6 C 1.53123 * 109.27583 * 180.80897 * 5 3 2 7 7 C 1.53118 * 109.16107 * 57.65281 * 6 5 3 8 8 C 1.53034 * 109.27950 * 302.34116 * 7 6 5 9 9 N 1.46845 * 109.46172 * 92.76513 * 3 2 1 10 10 C 1.46897 * 111.00174 * 305.85502 * 9 3 2 11 11 C 1.50705 * 109.47099 * 301.83491 * 10 9 3 12 12 C 1.38638 * 119.74967 * 89.99902 * 11 10 9 13 13 C 1.37613 * 120.24807 * 179.97438 * 12 11 10 14 14 C 1.40709 * 119.74697 * 0.02562 * 13 12 11 15 15 C 1.41399 * 120.24578 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00010 * 335.72332 * 15 14 13 17 17 C 1.39946 * 119.99947 * 155.72470 * 15 14 13 18 18 N 1.30821 * 120.00035 * 342.29492 * 17 15 14 19 19 Si 1.86800 * 120.00069 * 162.30304 * 17 15 14 20 20 H 1.48496 * 109.47266 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46900 * 299.99576 * 19 17 15 22 22 H 1.48504 * 109.47251 * 59.99432 * 19 17 15 23 23 C 1.40719 * 119.51207 * 0.28087 * 14 13 12 24 24 C 1.37621 * 119.74279 * 359.40153 * 23 14 13 25 25 H 4.18712 * 15.04462 * 359.97438 * 4 2 1 26 26 H 1.08992 * 109.50224 * 60.86570 * 5 3 2 27 27 H 1.09000 * 109.50059 * 300.74576 * 5 3 2 28 28 H 1.08997 * 109.51875 * 297.74747 * 6 5 3 29 29 H 1.08999 * 109.57288 * 177.59255 * 6 5 3 30 30 H 1.09000 * 109.49815 * 182.40428 * 7 6 5 31 31 H 1.08996 * 109.50427 * 62.29060 * 7 6 5 32 32 H 1.08992 * 109.46840 * 299.16978 * 8 7 6 33 33 H 1.09001 * 109.44904 * 179.18583 * 8 7 6 34 34 H 1.09000 * 109.47841 * 181.83711 * 10 9 3 35 35 H 1.08997 * 109.47510 * 61.83052 * 10 9 3 36 36 H 1.07997 * 119.87117 * 359.97438 * 12 11 10 37 37 H 1.08009 * 120.12478 * 180.02562 * 13 12 11 38 38 H 0.97004 * 120.00360 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.12475 * 179.72303 * 23 14 13 40 40 H 1.07995 * 119.87237 * 180.32011 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.9132 0.4699 5 6 3.1554 1.2136 0.7820 6 6 4.6864 1.2212 0.7622 7 6 5.1702 1.2423 -0.6904 8 6 4.6025 0.0285 -1.4297 9 7 3.1353 0.0677 -1.3829 10 6 2.5538 -1.0060 -2.1997 11 6 2.8964 -2.3416 -1.5914 12 6 2.0471 -2.9086 -0.6538 13 6 2.3497 -4.1280 -0.0922 14 6 3.5264 -4.7992 -0.4727 15 6 3.8473 -6.0528 0.0972 16 1 3.4496 -6.3242 1.0639 17 6 4.6803 -6.9418 -0.5914 18 7 4.8822 -6.7882 -1.8748 19 14 5.5036 -8.3481 0.3218 20 1 6.3272 -9.1396 -0.6270 21 1 6.3723 -7.8003 1.3944 22 1 4.4653 -9.2225 0.9240 23 6 4.3842 -4.2111 -1.4205 24 6 4.0583 -2.9939 -1.9739 25 1 -1.0499 -0.0007 0.0009 26 1 2.8050 1.1554 1.8125 27 1 2.7809 2.1274 0.3207 28 1 5.0615 0.3260 1.2581 29 1 5.0539 2.1063 1.2815 30 1 6.2593 1.2047 -0.7117 31 1 4.8275 2.1566 -1.1748 32 1 4.9567 -0.8854 -0.9530 33 1 4.9334 0.0486 -2.4680 34 1 2.9577 -0.9529 -3.2107 35 1 1.4706 -0.8899 -2.2347 36 1 1.1447 -2.3914 -0.3630 37 1 1.6864 -4.5681 0.6378 38 1 5.4599 -7.4042 -2.3521 39 1 5.2922 -4.7154 -1.7164 40 1 4.7126 -2.5431 -2.7054 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934514735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:32 Heat of formation + Delta-G solvation = 63.879655 kcal Electronic energy + Delta-G solvation = -20424.140571 eV Core-core repulsion = 17590.204362 eV Total energy + Delta-G solvation = -2833.936209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.42926 -37.20705 -34.27953 -33.31835 -32.82474 -29.89505 -29.84045 -29.23149 -26.81013 -24.50373 -23.30690 -22.30604 -20.86293 -20.07257 -19.52956 -17.68889 -17.31731 -15.57452 -15.34290 -15.04002 -14.68954 -14.39948 -13.86677 -13.84636 -13.52322 -13.12160 -12.75748 -12.51332 -12.32776 -11.96544 -11.58815 -11.32093 -11.27821 -11.08232 -10.97148 -10.74890 -10.66519 -10.51716 -10.43367 -10.32910 -10.04281 -9.84867 -9.59878 -9.34774 -9.13720 -7.85324 -7.47362 -7.31874 -6.79123 -4.38409 2.72005 3.02990 3.04475 3.05585 3.07388 3.16973 3.21069 3.89947 4.38852 4.56056 4.72417 5.01666 5.13409 5.21067 5.44214 5.65522 5.66607 5.83901 5.84782 5.87991 5.98450 6.05530 6.13521 6.17563 6.24842 6.31359 6.33316 6.36835 6.39844 6.49974 6.59718 6.91955 7.04077 7.24327 7.31889 7.46653 7.50190 7.59796 7.84724 7.94554 8.02430 8.11182 8.27857 8.61129 8.86522 8.94899 10.14934 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.005082 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.015017 B = 5508.499485 C = 5838.750866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.147 4.147 3 C 0.188 3.812 4 H 0.076 0.924 5 C -0.106 4.106 6 C -0.121 4.121 7 C -0.116 4.116 8 C 0.053 3.947 9 N -0.525 5.525 10 C 0.112 3.888 11 C -0.252 4.252 12 C -0.079 4.079 13 C -0.229 4.229 14 C 0.113 3.887 15 C -0.463 4.463 16 H 0.076 0.924 17 C 0.077 3.923 18 N -0.792 5.792 19 Si 0.907 3.093 20 H -0.278 1.278 21 H -0.264 1.264 22 H -0.265 1.265 23 C -0.168 4.168 24 C -0.088 4.088 25 H 0.213 0.787 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.281 0.719 39 H 0.116 0.884 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.264 11.245 2.128 11.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.148 4.148 3 C 0.080 3.920 4 H 0.094 0.906 5 C -0.143 4.143 6 C -0.158 4.158 7 C -0.154 4.154 8 C -0.075 4.075 9 N -0.248 5.248 10 C -0.014 4.014 11 C -0.254 4.254 12 C -0.097 4.097 13 C -0.249 4.249 14 C 0.111 3.889 15 C -0.493 4.493 16 H 0.094 0.906 17 C -0.141 4.141 18 N -0.417 5.417 19 Si 0.732 3.268 20 H -0.203 1.203 21 H -0.188 1.188 22 H -0.190 1.190 23 C -0.187 4.187 24 C -0.107 4.107 25 H 0.230 0.770 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.134 0.866 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.270 11.597 1.704 11.725 hybrid contribution 0.353 -1.670 0.589 1.806 sum 0.083 9.927 2.294 10.189 Atomic orbital electron populations 1.24719 0.95706 1.02714 1.01053 1.22789 0.93924 0.98553 0.99495 1.18585 0.84201 0.98558 0.90650 0.90608 1.21572 0.95619 0.97896 0.99253 1.21577 0.95317 1.01841 0.97091 1.21607 0.99536 0.98918 0.95372 1.22080 0.87437 0.97542 1.00439 1.62521 1.07183 1.45996 1.09088 1.20850 0.98814 0.86504 0.95276 1.19633 1.00067 0.99129 1.06587 1.20512 0.97371 0.95213 0.96651 1.20973 0.99003 0.97950 1.06932 1.17624 0.89284 0.91883 0.90132 1.19576 1.25562 0.99712 1.04411 0.90563 1.25909 0.94832 0.98981 0.94403 1.69819 1.29199 1.34876 1.07839 0.86381 0.79843 0.80372 0.80220 1.20298 1.18818 1.18989 1.21296 1.00872 0.94677 1.01864 1.20530 0.95849 0.95536 0.98815 0.76988 0.91673 0.91228 0.91867 0.91921 0.91800 0.91547 0.93199 0.91058 0.91615 0.91495 0.89299 0.89281 0.90806 0.86590 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.26 18.92 29.55 0.56 -2.70 16 2 C -0.15 -2.41 9.18 -37.12 -0.34 -2.75 16 3 C 0.19 3.07 1.68 -70.51 -0.12 2.95 16 4 H 0.08 1.45 6.46 -51.93 -0.34 1.11 16 5 C -0.11 -1.42 5.33 -26.65 -0.14 -1.56 16 6 C -0.12 -1.48 6.00 -26.61 -0.16 -1.64 16 7 C -0.12 -1.45 6.09 -26.65 -0.16 -1.61 16 8 C 0.05 0.81 4.81 -3.83 -0.02 0.79 16 9 N -0.52 -8.66 4.68 -231.51 -1.08 -9.74 16 10 C 0.11 2.05 5.19 -4.98 -0.03 2.02 16 11 C -0.25 -5.39 4.06 -104.33 -0.42 -5.81 16 12 C -0.08 -1.77 7.87 -39.66 -0.31 -2.08 16 13 C -0.23 -5.69 9.80 -38.88 -0.38 -6.07 16 14 C 0.11 3.02 5.57 -106.82 -0.60 2.43 16 15 C -0.46 -12.33 9.05 -37.74 -0.34 -12.67 16 16 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 17 C 0.08 1.93 5.14 -17.34 -0.09 1.84 16 18 N -0.79 -20.47 10.95 55.55 0.61 -19.87 16 19 Si 0.91 18.64 29.59 -169.99 -5.03 13.60 16 20 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 21 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 23 C -0.17 -4.31 8.70 -38.87 -0.34 -4.65 16 24 C -0.09 -2.01 8.07 -39.66 -0.32 -2.33 16 25 H 0.21 2.29 7.80 -54.09 -0.42 1.87 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.88 6.55 -51.93 -0.34 0.54 16 33 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 34 H 0.07 1.15 8.00 -51.93 -0.42 0.73 16 35 H 0.07 1.24 6.96 -51.93 -0.36 0.88 16 36 H 0.09 1.87 6.00 -52.49 -0.31 1.56 16 37 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 38 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 39 H 0.12 3.10 6.16 -52.49 -0.32 2.77 16 40 H 0.08 1.75 8.02 -52.49 -0.42 1.33 16 LS Contribution 319.14 15.07 4.81 4.81 Total: -1.00 -27.27 319.14 -9.77 -37.04 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -5.86 Total: 8.01 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: -3.21 Total: -33.85 kcal Atomic # 7 Polarization: -29.13 SS G_CDS: -0.47 Total: -29.61 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.27 -9.77 -37.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934514735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.920 kcal (2) G-P(sol) polarization free energy of solvation -27.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds