Wall clock time and date at job start Mon Mar 30 2020 01:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09001 * 109.45541 * 332.79158 * 3 2 1 5 5 C 1.53040 * 109.46069 * 212.81673 * 3 2 1 6 6 C 1.53123 * 109.27583 * 180.80897 * 5 3 2 7 7 C 1.53118 * 109.16107 * 57.65281 * 6 5 3 8 8 C 1.53034 * 109.27950 * 302.34116 * 7 6 5 9 9 N 1.46845 * 109.46172 * 92.76513 * 3 2 1 10 10 C 1.46897 * 111.00174 * 305.85502 * 9 3 2 11 11 C 1.50705 * 109.47099 * 301.83491 * 10 9 3 12 12 C 1.38638 * 119.74967 * 89.99902 * 11 10 9 13 13 C 1.37613 * 120.24807 * 179.97438 * 12 11 10 14 14 C 1.40709 * 119.74697 * 0.02562 * 13 12 11 15 15 C 1.41399 * 120.24578 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00010 * 335.72332 * 15 14 13 17 17 C 1.39946 * 119.99947 * 155.72470 * 15 14 13 18 18 N 1.30821 * 120.00035 * 342.29492 * 17 15 14 19 19 Si 1.86800 * 120.00069 * 162.30304 * 17 15 14 20 20 H 1.48496 * 109.47266 * 179.97438 * 19 17 15 21 21 H 1.48501 * 109.46900 * 299.99576 * 19 17 15 22 22 H 1.48504 * 109.47251 * 59.99432 * 19 17 15 23 23 C 1.40719 * 119.51207 * 0.28087 * 14 13 12 24 24 C 1.37621 * 119.74279 * 359.40153 * 23 14 13 25 25 H 4.18712 * 15.04462 * 359.97438 * 4 2 1 26 26 H 1.08992 * 109.50224 * 60.86570 * 5 3 2 27 27 H 1.09000 * 109.50059 * 300.74576 * 5 3 2 28 28 H 1.08997 * 109.51875 * 297.74747 * 6 5 3 29 29 H 1.08999 * 109.57288 * 177.59255 * 6 5 3 30 30 H 1.09000 * 109.49815 * 182.40428 * 7 6 5 31 31 H 1.08996 * 109.50427 * 62.29060 * 7 6 5 32 32 H 1.08992 * 109.46840 * 299.16978 * 8 7 6 33 33 H 1.09001 * 109.44904 * 179.18583 * 8 7 6 34 34 H 1.09000 * 109.47841 * 181.83711 * 10 9 3 35 35 H 1.08997 * 109.47510 * 61.83052 * 10 9 3 36 36 H 1.07997 * 119.87117 * 359.97438 * 12 11 10 37 37 H 1.08009 * 120.12478 * 180.02562 * 13 12 11 38 38 H 0.97004 * 120.00360 * 179.97438 * 18 17 15 39 39 H 1.07999 * 120.12475 * 179.72303 * 23 14 13 40 40 H 1.07995 * 119.87237 * 180.32011 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0095 -0.9132 0.4699 5 6 3.1554 1.2136 0.7820 6 6 4.6864 1.2212 0.7622 7 6 5.1702 1.2423 -0.6904 8 6 4.6025 0.0285 -1.4297 9 7 3.1353 0.0677 -1.3829 10 6 2.5538 -1.0060 -2.1997 11 6 2.8964 -2.3416 -1.5914 12 6 2.0471 -2.9086 -0.6538 13 6 2.3497 -4.1280 -0.0922 14 6 3.5264 -4.7992 -0.4727 15 6 3.8473 -6.0528 0.0972 16 1 3.4496 -6.3242 1.0639 17 6 4.6803 -6.9418 -0.5914 18 7 4.8822 -6.7882 -1.8748 19 14 5.5036 -8.3481 0.3218 20 1 6.3272 -9.1396 -0.6270 21 1 6.3723 -7.8003 1.3944 22 1 4.4653 -9.2225 0.9240 23 6 4.3842 -4.2111 -1.4205 24 6 4.0583 -2.9939 -1.9739 25 1 -1.0499 -0.0007 0.0009 26 1 2.8050 1.1554 1.8125 27 1 2.7809 2.1274 0.3207 28 1 5.0615 0.3260 1.2581 29 1 5.0539 2.1063 1.2815 30 1 6.2593 1.2047 -0.7117 31 1 4.8275 2.1566 -1.1748 32 1 4.9567 -0.8854 -0.9530 33 1 4.9334 0.0486 -2.4680 34 1 2.9577 -0.9529 -3.2107 35 1 1.4706 -0.8899 -2.2347 36 1 1.1447 -2.3914 -0.3630 37 1 1.6864 -4.5681 0.6378 38 1 5.4599 -7.4042 -2.3521 39 1 5.2922 -4.7154 -1.7164 40 1 4.7126 -2.5431 -2.7054 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934514735.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:32 Heat of formation + Delta-G solvation = 50.323363 kcal Electronic energy + Delta-G solvation = -20424.728415 eV Core-core repulsion = 17590.204362 eV Total energy + Delta-G solvation = -2834.524054 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.82944 -38.91475 -35.93327 -34.61960 -34.26090 -31.60421 -31.21569 -30.93061 -28.44470 -26.11610 -24.51025 -23.74173 -22.70114 -21.78282 -20.71445 -19.25209 -18.90220 -17.22127 -16.79100 -16.36692 -16.22530 -15.73998 -15.52216 -15.36497 -14.96943 -14.47740 -14.26293 -13.95581 -13.82577 -13.53994 -13.31553 -13.02372 -12.78754 -12.62541 -12.45777 -12.24390 -12.15680 -11.81898 -11.68959 -11.55294 -11.47369 -11.32487 -11.18070 -11.03158 -10.78019 -9.39492 -9.32311 -9.16936 -8.66721 -6.37436 0.91057 1.10407 1.34943 1.45990 1.50193 1.87422 1.99235 2.17746 2.67066 3.19340 3.50730 3.72166 3.95120 4.04930 4.12467 4.24391 4.36211 4.39500 4.47788 4.55021 4.62883 4.72649 4.80710 4.91134 4.96671 4.99945 5.05575 5.09294 5.12574 5.15598 5.22042 5.30167 5.34696 5.43126 5.50260 5.66417 5.91823 6.05552 6.09331 6.13017 6.29819 6.35922 6.66452 6.76945 6.90555 6.99949 8.29497 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024049 B = 0.005082 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.015017 B = 5508.499485 C = 5838.750866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.195 4.195 3 C 0.188 3.812 4 H 0.040 0.960 5 C -0.101 4.101 6 C -0.120 4.120 7 C -0.110 4.110 8 C 0.050 3.950 9 N -0.516 5.516 10 C 0.117 3.883 11 C -0.235 4.235 12 C -0.076 4.076 13 C -0.248 4.248 14 C 0.082 3.918 15 C -0.503 4.503 16 H 0.072 0.928 17 C 0.037 3.963 18 N -0.824 5.824 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.261 1.261 22 H -0.260 1.260 23 C -0.190 4.190 24 C -0.087 4.087 25 H 0.247 0.753 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.048 0.952 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.020 0.980 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.289 0.711 39 H 0.100 0.900 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.409 12.867 2.145 13.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.195 4.195 3 C 0.080 3.920 4 H 0.058 0.942 5 C -0.138 4.138 6 C -0.157 4.157 7 C -0.148 4.148 8 C -0.078 4.078 9 N -0.239 5.239 10 C -0.010 4.010 11 C -0.237 4.237 12 C -0.095 4.095 13 C -0.268 4.268 14 C 0.080 3.920 15 C -0.532 4.532 16 H 0.090 0.910 17 C -0.178 4.178 18 N -0.450 5.450 19 Si 0.802 3.198 20 H -0.189 1.189 21 H -0.185 1.185 22 H -0.184 1.184 23 C -0.209 4.209 24 C -0.106 4.106 25 H 0.264 0.736 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.039 0.961 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.421 13.241 1.719 13.359 hybrid contribution 0.290 -2.028 0.552 2.122 sum -0.131 11.212 2.271 11.441 Atomic orbital electron populations 1.25590 0.96559 1.00632 0.98982 1.23064 0.94534 1.00496 1.01449 1.18558 0.84796 0.98343 0.90294 0.94229 1.21567 0.96350 0.96697 0.99218 1.21598 0.94507 1.02409 0.97214 1.21591 1.00427 0.97751 0.95025 1.22182 0.86700 0.97796 1.01138 1.62570 1.07825 1.44234 1.09225 1.20842 0.99256 0.85012 0.95927 1.20016 0.98647 1.00010 1.05036 1.20703 0.98067 0.94407 0.96332 1.21137 0.98896 0.99097 1.07634 1.17952 0.90249 0.92687 0.91138 1.19808 1.27849 1.00719 1.04862 0.90991 1.26749 0.94682 1.01382 0.95016 1.69868 1.29771 1.36204 1.09154 0.85265 0.78742 0.76888 0.78896 1.18922 1.18517 1.18411 1.21258 1.00678 0.96003 1.03011 1.20742 0.96544 0.94607 0.98674 0.73649 0.90976 0.90396 0.93353 0.89214 0.90169 0.90318 0.96125 0.90257 0.90456 0.91279 0.87645 0.89271 0.90063 0.88242 0.87782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.30 18.92 74.32 1.41 -3.90 16 2 C -0.20 -6.08 9.18 31.12 0.29 -5.80 16 3 C 0.19 5.98 1.68 43.13 0.07 6.06 16 4 H 0.04 1.55 6.46 -2.39 -0.02 1.54 16 5 C -0.10 -2.53 5.33 30.65 0.16 -2.36 16 6 C -0.12 -2.70 6.00 30.67 0.18 -2.52 16 7 C -0.11 -2.49 6.09 30.65 0.19 -2.30 16 8 C 0.05 1.45 4.81 86.32 0.42 1.87 16 9 N -0.52 -16.30 4.68 -886.35 -4.14 -20.44 16 10 C 0.12 4.11 5.19 85.56 0.44 4.55 16 11 C -0.23 -10.03 4.06 -19.67 -0.08 -10.11 16 12 C -0.08 -3.48 7.87 22.22 0.17 -3.31 16 13 C -0.25 -12.77 9.80 22.73 0.22 -12.55 16 14 C 0.08 4.58 5.57 -21.29 -0.12 4.46 16 15 C -0.50 -27.96 9.05 23.46 0.21 -27.75 16 16 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 17 C 0.04 1.89 5.14 85.26 0.44 2.33 16 18 N -0.82 -43.84 10.95 21.83 0.24 -43.60 16 19 Si 0.98 38.80 29.59 68.60 2.03 40.83 16 20 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 C -0.19 -10.17 8.70 22.73 0.20 -9.98 16 24 C -0.09 -4.02 8.07 22.22 0.18 -3.84 16 25 H 0.25 4.37 7.80 -4.42 -0.03 4.34 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.09 1.56 8.14 -2.39 -0.02 1.55 16 30 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.02 0.73 6.55 -2.39 -0.02 0.71 16 33 H 0.08 2.17 8.06 -2.39 -0.02 2.16 16 34 H 0.08 2.55 8.00 -2.39 -0.02 2.53 16 35 H 0.07 2.42 6.96 -2.39 -0.02 2.40 16 36 H 0.11 4.40 6.00 -2.91 -0.02 4.38 16 37 H 0.09 4.44 8.06 -2.91 -0.02 4.41 16 38 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 39 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 40 H 0.10 4.32 8.02 -2.91 -0.02 4.29 16 Total: -1.00 -60.95 319.14 3.52 -57.43 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 1.01 Total: 30.93 kcal Atomic # 6 Polarization: -69.53 SS G_CDS: 4.38 Total: -65.14 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -3.90 Total: -64.04 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 2.03 Total: 40.83 kcal Total: -60.95 3.52 -57.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934514735.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.750 kcal (2) G-P(sol) polarization free energy of solvation -60.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds