Wall clock time and date at job start Mon Mar 30 2020 01:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00118 * 2 1 4 4 H 1.48497 * 109.47002 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46755 * 300.00140 * 3 2 1 6 6 H 1.48498 * 109.46790 * 60.00119 * 3 2 1 7 7 C 1.37882 * 120.00003 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99727 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99842 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.47057 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99909 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00403 * 0.02562 * 11 10 9 13 13 C 1.50701 * 119.99693 * 180.02562 * 11 10 9 14 14 H 1.08998 * 109.46928 * 305.00070 * 13 11 10 15 15 O 1.42898 * 109.46830 * 185.00024 * 13 11 10 16 16 C 1.53001 * 109.47217 * 65.00080 * 13 11 10 17 17 C 1.52990 * 109.46134 * 64.98528 * 16 13 11 18 18 C 1.53012 * 109.46385 * 164.02057 * 17 16 13 19 19 C 1.53014 * 109.46173 * 75.94535 * 18 17 16 20 20 C 1.52980 * 109.45931 * 284.04853 * 19 18 17 21 21 C 1.52986 * 109.50298 * 315.99662 * 20 19 18 22 22 C 1.53008 * 109.47901 * 112.93972 * 21 20 19 23 23 C 1.52986 * 109.46450 * 185.01250 * 16 13 11 24 24 H 0.97006 * 120.00235 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47623 * 60.00103 * 9 7 2 26 26 H 1.08993 * 109.47757 * 300.00000 * 9 7 2 27 27 H 0.96998 * 119.99501 * 0.02562 * 10 9 7 28 28 H 0.96700 * 114.00496 * 299.99983 * 15 13 11 29 29 H 1.09002 * 109.46698 * 304.99814 * 16 13 11 30 30 H 1.08998 * 109.47076 * 284.01657 * 17 16 13 31 31 H 1.08996 * 109.47464 * 44.01617 * 17 16 13 32 32 H 1.08998 * 109.47094 * 315.94796 * 18 17 16 33 33 H 1.09004 * 109.47004 * 195.94139 * 18 17 16 34 34 H 1.09004 * 109.46606 * 164.05305 * 19 18 17 35 35 H 1.08995 * 109.47657 * 44.05140 * 19 18 17 36 36 H 1.09003 * 109.46808 * 195.98517 * 20 19 18 37 37 H 1.09001 * 109.46756 * 76.00507 * 20 19 18 38 38 H 1.09003 * 109.46775 * 352.93463 * 21 20 19 39 39 H 1.09001 * 109.47001 * 232.94306 * 21 20 19 40 40 H 1.09002 * 109.47544 * 164.05931 * 22 21 20 41 41 H 1.08993 * 109.47891 * 44.03339 * 22 21 20 42 42 H 1.09008 * 109.46508 * 247.06749 * 23 16 13 43 43 H 1.09000 * 109.47247 * 7.06240 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0018 11 6 1.7537 -4.8834 -0.0015 12 8 0.5614 -5.1050 -0.0006 13 6 2.7330 -6.0288 -0.0022 14 1 3.4166 -5.9219 -0.8444 15 8 2.0223 -7.2630 -0.1191 16 6 3.5287 -6.0203 1.3047 17 6 2.5855 -6.2944 2.4776 18 6 3.4045 -6.6796 3.7113 19 6 4.0448 -5.4254 4.3100 20 6 5.2380 -5.0027 3.4510 21 6 6.0657 -6.2359 3.0843 22 6 5.9680 -6.4866 1.5781 23 6 4.6068 -7.1045 1.2521 24 1 -0.4851 0.8401 0.0004 25 1 0.6239 -2.5567 -0.8903 26 1 0.6247 -2.5571 0.8896 27 1 3.1566 -3.4354 -0.0021 28 1 1.3944 -7.4249 0.5983 29 1 3.9994 -5.0461 1.4370 30 1 2.0036 -5.3983 2.6930 31 1 1.9119 -7.1114 2.2189 32 1 4.1849 -7.3841 3.4238 33 1 2.7513 -7.1426 4.4510 34 1 4.3843 -5.6394 5.3235 35 1 3.3113 -4.6196 4.3351 36 1 5.8581 -4.3021 4.0102 37 1 4.8784 -4.5228 2.5408 38 1 5.6834 -7.1032 3.6226 39 1 7.1075 -6.0687 3.3580 40 1 6.7601 -7.1697 1.2712 41 1 6.0756 -5.5421 1.0447 42 1 4.3765 -7.8814 1.9812 43 1 4.6354 -7.5403 0.2535 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694419.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:49 Heat of formation + Delta-G solvation = -109.377313 kcal Electronic energy + Delta-G solvation = -22068.948928 eV Core-core repulsion = 18920.190813 eV Total energy + Delta-G solvation = -3148.758114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32866 -38.48920 -36.18189 -34.22062 -33.00711 -32.81857 -32.21878 -28.85442 -26.95533 -26.02566 -24.86344 -22.51883 -22.01035 -20.45679 -19.74042 -19.26156 -17.78342 -16.71646 -16.02607 -15.80118 -15.31160 -14.79066 -14.58593 -14.27690 -14.14462 -13.92793 -13.57549 -13.32369 -13.10453 -12.79259 -12.15443 -11.99551 -11.89263 -11.68331 -11.48951 -11.11615 -11.01232 -10.97830 -10.94905 -10.93412 -10.80917 -10.56691 -10.34094 -10.27109 -10.03414 -9.73494 -9.40689 -8.77858 -8.76813 -7.92426 -6.19086 -4.26114 3.21496 3.26770 3.28751 3.31568 4.00890 4.33789 4.42385 4.60199 4.65616 4.74696 4.96352 5.01212 5.08995 5.11170 5.16541 5.17301 5.21869 5.44902 5.53875 5.59571 5.70893 5.80440 5.82480 5.88732 5.92179 5.94793 6.00577 6.04880 6.18169 6.24205 6.29698 6.33328 6.49860 6.51939 7.26478 7.38812 7.48652 7.60380 7.72158 7.94321 8.57710 8.74522 9.03939 9.40600 10.91147 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018237 B = 0.005409 C = 0.004696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.008805 B = 5175.479254 C = 5961.349296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.708 5.708 11 C 0.471 3.529 12 O -0.551 6.551 13 C 0.093 3.907 14 H 0.117 0.883 15 O -0.541 6.541 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.135 4.135 19 C -0.120 4.120 20 C -0.130 4.130 21 C -0.126 4.126 22 C -0.122 4.122 23 C -0.116 4.116 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.390 0.610 28 H 0.378 0.622 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.371 -13.192 6.618 19.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.357 5.357 11 C 0.255 3.745 12 O -0.430 6.430 13 C 0.030 3.970 14 H 0.134 0.866 15 O -0.348 6.348 16 C -0.139 4.139 17 C -0.156 4.156 18 C -0.171 4.171 19 C -0.157 4.157 20 C -0.167 4.167 21 C -0.164 4.164 22 C -0.159 4.159 23 C -0.153 4.153 24 H 0.075 0.925 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.222 0.778 28 H 0.228 0.772 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.682 -13.263 6.083 18.691 hybrid contribution 0.444 1.297 0.479 1.452 sum 12.126 -11.965 6.561 18.255 Atomic orbital electron populations 1.69982 1.06125 1.27211 1.48935 1.24952 0.94895 0.99459 0.94684 0.86377 0.79847 0.83008 0.77786 1.19614 1.20769 1.20783 1.21249 0.93262 0.90412 1.53151 0.91856 1.19110 0.88334 0.82030 0.97697 1.46489 1.11043 1.06203 1.71974 1.21366 0.90214 0.85213 0.77736 1.90664 1.16758 1.84799 1.50817 1.22039 0.92231 0.83838 0.98911 0.86570 1.86512 1.58433 1.36643 1.53182 1.22145 0.96445 1.01270 0.94020 1.21669 0.97545 1.01929 0.94478 1.22033 0.99830 0.98385 0.96874 1.21623 0.97689 0.98017 0.98404 1.21865 0.96630 0.97500 1.00720 1.21822 0.99470 0.98800 0.96272 1.21749 0.97009 1.01014 0.96126 1.21800 0.93498 0.97706 1.02305 0.92484 0.95587 0.95576 0.77790 0.77187 0.88684 0.91300 0.92064 0.89640 0.92483 0.92565 0.91712 0.92448 0.90696 0.91069 0.92668 0.92302 0.91637 0.90823 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.54 -14.55 9.28 -34.44 -0.32 -14.87 16 8 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 9 C 0.25 6.55 5.43 -5.19 -0.03 6.52 16 10 N -0.71 -14.58 5.45 -61.47 -0.33 -14.91 16 11 C 0.47 9.28 6.46 -10.98 -0.07 9.21 16 12 O -0.55 -13.27 16.32 -14.30 -0.23 -13.50 16 13 C 0.09 1.35 2.85 -27.88 -0.08 1.27 16 14 H 0.12 1.54 8.11 -51.93 -0.42 1.12 16 15 O -0.54 -8.17 12.63 -55.09 -0.70 -8.87 16 16 C -0.12 -1.41 1.56 -90.63 -0.14 -1.56 16 17 C -0.12 -1.44 4.53 -26.73 -0.12 -1.56 16 18 C -0.13 -1.35 5.33 -26.72 -0.14 -1.50 16 19 C -0.12 -1.25 5.71 -26.73 -0.15 -1.40 16 20 C -0.13 -1.31 5.48 -26.75 -0.15 -1.46 16 21 C -0.13 -1.10 5.47 -26.73 -0.15 -1.25 16 22 C -0.12 -1.07 5.59 -26.73 -0.15 -1.22 16 23 C -0.12 -1.13 4.92 -26.74 -0.13 -1.26 16 24 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.39 6.86 8.02 -40.82 -0.33 6.53 16 28 H 0.38 5.18 6.62 45.56 0.30 5.48 16 29 H 0.10 1.15 4.32 -51.93 -0.22 0.93 16 30 H 0.07 1.02 7.60 -51.93 -0.39 0.63 16 31 H 0.06 0.72 5.96 -51.93 -0.31 0.41 16 32 H 0.09 0.78 2.83 -51.93 -0.15 0.63 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.77 7.82 -51.93 -0.41 0.37 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.84 4.69 -51.93 -0.24 0.59 16 38 H 0.07 0.60 5.47 -51.93 -0.28 0.31 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.60 7.47 -51.93 -0.39 0.21 16 42 H 0.07 0.69 5.47 -51.92 -0.28 0.40 16 43 H 0.07 0.68 7.55 -51.93 -0.39 0.29 16 LS Contribution 321.44 15.07 4.84 4.84 Total: -1.00 -31.50 321.44 -8.44 -39.95 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -6.01 Total: 9.48 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -1.73 Total: -7.41 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.40 Total: -40.18 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: -0.93 Total: -22.37 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.50 -8.44 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694419.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.432 kcal (2) G-P(sol) polarization free energy of solvation -31.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds