Wall clock time and date at job start Mon Mar 30 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48500 * 109.47255 * 240.00018 * 3 2 1 5 5 H 1.48494 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46761 * 120.00341 * 3 2 1 7 7 C 1.37881 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99600 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46774 * 179.97438 * 9 7 2 11 11 C 1.34783 * 120.00200 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99659 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00250 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.47247 * 54.99892 * 13 11 10 15 15 O 1.42895 * 109.47158 * 175.00345 * 13 11 10 16 16 C 1.53006 * 109.46866 * 295.00060 * 13 11 10 17 17 C 1.53010 * 109.46964 * 299.99943 * 16 13 11 18 18 C 1.52995 * 109.45758 * 164.04927 * 17 16 13 19 19 C 1.52980 * 109.51045 * 315.98725 * 18 17 16 20 20 C 1.53002 * 109.47109 * 112.93893 * 19 18 17 21 21 C 1.53016 * 109.42858 * 284.04349 * 20 19 18 22 22 C 1.52978 * 109.48411 * 75.96354 * 21 20 19 23 23 C 1.52998 * 109.50233 * 247.06137 * 22 21 20 24 24 H 0.96995 * 119.99304 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47055 * 60.00458 * 9 7 2 26 26 H 1.09000 * 109.47238 * 299.99724 * 9 7 2 27 27 H 0.97001 * 120.00070 * 0.02562 * 10 9 7 28 28 H 0.96698 * 114.00355 * 59.99513 * 15 13 11 29 29 H 1.09001 * 109.46801 * 60.00064 * 16 13 11 30 30 H 1.09002 * 109.47306 * 284.04003 * 17 16 13 31 31 H 1.08998 * 109.47442 * 44.05460 * 17 16 13 32 32 H 1.09002 * 109.46021 * 195.97651 * 18 17 16 33 33 H 1.09000 * 109.45517 * 75.99727 * 18 17 16 34 34 H 1.09002 * 109.47049 * 352.93804 * 19 18 17 35 35 H 1.08997 * 109.47039 * 232.93974 * 19 18 17 36 36 H 1.09001 * 109.48372 * 164.05962 * 20 19 18 37 37 H 1.08998 * 109.48216 * 44.02705 * 20 19 18 38 38 H 1.08998 * 109.46634 * 315.95337 * 21 20 19 39 39 H 1.09005 * 109.46189 * 195.96192 * 21 20 19 40 40 H 1.09000 * 109.46632 * 127.05786 * 22 21 20 41 41 H 1.08997 * 109.46219 * 7.06974 * 22 21 20 42 42 H 1.09001 * 109.47549 * 284.01962 * 23 22 21 43 43 H 1.09004 * 109.47176 * 164.00840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 1.7536 -4.8835 -0.0033 12 8 0.5613 -5.1050 -0.0035 13 6 2.7329 -6.0289 -0.0038 14 1 3.4169 -5.9225 0.8381 15 8 2.0222 -7.2631 0.1130 16 6 3.5277 -6.0198 -1.3111 17 6 2.5674 -6.1692 -2.4929 18 6 3.2826 -5.7681 -3.7846 19 6 4.0802 -4.4840 -3.5494 20 6 5.5766 -4.7884 -3.6449 21 6 6.0342 -5.4976 -2.3685 22 6 5.5718 -6.9554 -2.4011 23 6 4.5220 -7.1828 -1.3115 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6239 -2.5575 0.8880 27 1 3.1566 -3.4355 -0.0022 28 1 1.3939 -7.4246 -0.6041 29 1 4.0698 -5.0783 -1.4001 30 1 2.2398 -7.2063 -2.5660 31 1 1.7018 -5.5244 -2.3415 32 1 2.5460 -5.5995 -4.5702 33 1 3.9603 -6.5664 -4.0873 34 1 3.8518 -4.0908 -2.5588 35 1 3.8107 -3.7456 -4.3045 36 1 6.1303 -3.8568 -3.7614 37 1 5.7625 -5.4319 -4.5047 38 1 5.6023 -4.9986 -1.5010 39 1 7.1217 -5.4627 -2.3037 40 1 6.4248 -7.6110 -2.2260 41 1 5.1374 -7.1770 -3.3759 42 1 5.0132 -7.2413 -0.3402 43 1 3.9913 -8.1146 -1.5071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935694423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:51 Heat of formation + Delta-G solvation = -111.025337 kcal Electronic energy + Delta-G solvation = -22232.830147 eV Core-core repulsion = 19084.000569 eV Total energy + Delta-G solvation = -3148.829578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.36634 -38.41940 -36.14940 -34.20871 -32.88221 -32.84041 -32.25444 -28.95707 -26.98253 -25.96078 -24.69697 -22.44266 -21.81399 -20.89830 -19.83363 -19.03691 -17.70418 -16.71024 -15.95514 -15.86402 -15.23825 -14.81731 -14.48490 -14.23833 -14.10340 -13.90024 -13.55048 -13.25873 -13.09628 -12.76468 -12.23997 -11.96980 -11.79495 -11.78241 -11.39969 -11.37597 -11.09303 -11.01878 -10.97495 -10.89378 -10.76535 -10.40517 -10.34855 -10.16366 -9.94155 -9.67948 -9.43787 -8.79646 -8.75690 -7.92647 -6.18497 -4.25701 3.23353 3.25889 3.28569 3.29761 4.00458 4.34040 4.44943 4.54824 4.70184 4.83610 4.98231 5.00426 5.09638 5.17637 5.20338 5.22009 5.25912 5.43334 5.54245 5.62584 5.67054 5.80298 5.90406 5.93556 5.95113 5.99096 6.04811 6.11817 6.15322 6.26028 6.32047 6.38766 6.49121 6.58569 7.26296 7.38427 7.48936 7.60039 7.72506 7.94747 8.57151 8.74340 9.03331 9.40835 10.91631 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.005783 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.347766 B = 4840.883172 C = 5751.628235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.708 5.708 11 C 0.472 3.528 12 O -0.551 6.551 13 C 0.092 3.908 14 H 0.115 0.885 15 O -0.541 6.541 16 C -0.132 4.132 17 C -0.122 4.122 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.118 4.118 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.104 4.104 24 H 0.266 0.734 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.389 0.611 28 H 0.378 0.622 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.209 -12.363 -6.616 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.129 3.871 10 N -0.357 5.357 11 C 0.256 3.744 12 O -0.430 6.430 13 C 0.029 3.971 14 H 0.133 0.867 15 O -0.346 6.346 16 C -0.151 4.151 17 C -0.159 4.159 18 C -0.158 4.158 19 C -0.169 4.169 20 C -0.155 4.155 21 C -0.167 4.167 22 C -0.165 4.165 23 C -0.141 4.141 24 H 0.076 0.924 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.221 0.779 28 H 0.227 0.773 29 H 0.125 0.875 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.080 0.920 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 11.516 -12.434 -6.076 18.004 hybrid contribution 0.485 1.222 -0.451 1.390 sum 12.002 -11.212 -6.527 17.673 Atomic orbital electron populations 1.69964 1.06115 1.27422 1.48743 1.24943 0.94892 0.99412 0.94671 0.86493 0.79448 0.82388 0.78701 1.20056 1.21055 1.20053 1.21170 0.93177 0.90429 1.53406 0.91969 1.19100 0.88309 0.81975 0.97690 1.46496 1.11005 1.06211 1.71970 1.21331 0.90210 0.85190 0.77655 1.90668 1.16739 1.84784 1.50842 1.22022 0.92174 0.83923 0.98935 0.86745 1.86492 1.58360 1.36577 1.53193 1.22369 0.97014 1.01753 0.93922 1.21716 0.98339 1.01560 0.94322 1.21780 0.99080 0.97810 0.97150 1.21841 0.94479 0.97499 1.03079 1.21702 0.96201 1.00111 0.97510 1.21840 1.00194 0.95904 0.98736 1.21873 0.98247 0.96411 0.99919 1.21540 0.95988 0.97774 0.98808 0.92381 0.95565 0.95599 0.77858 0.77316 0.87510 0.91880 0.91274 0.92406 0.91149 0.90400 0.92173 0.92271 0.92182 0.90829 0.92521 0.92535 0.90967 0.91993 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.66 29.54 -169.99 -5.02 15.64 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.54 -14.50 9.28 -34.44 -0.32 -14.82 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.53 5.43 -5.19 -0.03 6.50 16 10 N -0.71 -14.45 5.51 -61.47 -0.34 -14.79 16 11 C 0.47 9.24 5.70 -10.98 -0.06 9.18 16 12 O -0.55 -13.19 16.29 -14.30 -0.23 -13.42 16 13 C 0.09 1.35 3.13 -27.88 -0.09 1.26 16 14 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 15 O -0.54 -8.17 12.59 -55.09 -0.69 -8.87 16 16 C -0.13 -1.56 1.44 -90.61 -0.13 -1.69 16 17 C -0.12 -1.50 4.26 -26.73 -0.11 -1.62 16 18 C -0.12 -1.34 5.48 -26.74 -0.15 -1.49 16 19 C -0.13 -1.54 5.47 -26.74 -0.15 -1.69 16 20 C -0.12 -1.15 5.59 -26.72 -0.15 -1.30 16 21 C -0.13 -1.21 5.47 -26.73 -0.15 -1.35 16 22 C -0.13 -1.13 5.48 -26.74 -0.15 -1.28 16 23 C -0.10 -1.03 4.73 -26.73 -0.13 -1.16 16 24 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.39 6.79 8.10 -40.82 -0.33 6.46 16 28 H 0.38 5.16 7.49 45.56 0.34 5.50 16 29 H 0.11 1.27 2.61 -51.93 -0.14 1.14 16 30 H 0.06 0.70 7.28 -51.93 -0.38 0.32 16 31 H 0.07 1.08 6.73 -51.93 -0.35 0.73 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.68 4.69 -51.93 -0.24 0.44 16 34 H 0.08 1.04 5.47 -51.93 -0.28 0.75 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.54 7.47 -51.93 -0.39 0.15 16 38 H 0.07 0.73 5.47 -51.93 -0.28 0.45 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.64 4.69 -51.93 -0.24 0.39 16 42 H 0.06 0.61 8.04 -51.93 -0.42 0.19 16 43 H 0.07 0.66 7.81 -51.93 -0.41 0.26 16 LS Contribution 322.37 15.07 4.86 4.86 Total: -1.00 -31.24 322.37 -8.43 -39.67 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -6.03 Total: 9.86 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -1.70 Total: -7.77 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.40 Total: -39.97 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.93 Total: -22.29 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.24 -8.43 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.354 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds