Wall clock time and date at job start Mon Mar 30 2020 01:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00229 * 2 1 4 4 H 1.48500 * 109.47255 * 240.00018 * 3 2 1 5 5 H 1.48494 * 109.47213 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46761 * 120.00341 * 3 2 1 7 7 C 1.37881 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99913 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99600 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46774 * 179.97438 * 9 7 2 11 11 C 1.34783 * 120.00200 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99659 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00250 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.47247 * 54.99892 * 13 11 10 15 15 O 1.42895 * 109.47158 * 175.00345 * 13 11 10 16 16 C 1.53006 * 109.46866 * 295.00060 * 13 11 10 17 17 C 1.53010 * 109.46964 * 299.99943 * 16 13 11 18 18 C 1.52995 * 109.45758 * 164.04927 * 17 16 13 19 19 C 1.52980 * 109.51045 * 315.98725 * 18 17 16 20 20 C 1.53002 * 109.47109 * 112.93893 * 19 18 17 21 21 C 1.53016 * 109.42858 * 284.04349 * 20 19 18 22 22 C 1.52978 * 109.48411 * 75.96354 * 21 20 19 23 23 C 1.52998 * 109.50233 * 247.06137 * 22 21 20 24 24 H 0.96995 * 119.99304 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47055 * 60.00458 * 9 7 2 26 26 H 1.09000 * 109.47238 * 299.99724 * 9 7 2 27 27 H 0.97001 * 120.00070 * 0.02562 * 10 9 7 28 28 H 0.96698 * 114.00355 * 59.99513 * 15 13 11 29 29 H 1.09001 * 109.46801 * 60.00064 * 16 13 11 30 30 H 1.09002 * 109.47306 * 284.04003 * 17 16 13 31 31 H 1.08998 * 109.47442 * 44.05460 * 17 16 13 32 32 H 1.09002 * 109.46021 * 195.97651 * 18 17 16 33 33 H 1.09000 * 109.45517 * 75.99727 * 18 17 16 34 34 H 1.09002 * 109.47049 * 352.93804 * 19 18 17 35 35 H 1.08997 * 109.47039 * 232.93974 * 19 18 17 36 36 H 1.09001 * 109.48372 * 164.05962 * 20 19 18 37 37 H 1.08998 * 109.48216 * 44.02705 * 20 19 18 38 38 H 1.08998 * 109.46634 * 315.95337 * 21 20 19 39 39 H 1.09005 * 109.46189 * 195.96192 * 21 20 19 40 40 H 1.09000 * 109.46632 * 127.05786 * 22 21 20 41 41 H 1.08997 * 109.46219 * 7.06974 * 22 21 20 42 42 H 1.09001 * 109.47549 * 284.01962 * 23 22 21 43 43 H 1.09004 * 109.47176 * 164.00840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 7 2.2029 -3.6127 -0.0027 11 6 1.7536 -4.8835 -0.0033 12 8 0.5613 -5.1050 -0.0035 13 6 2.7329 -6.0289 -0.0038 14 1 3.4169 -5.9225 0.8381 15 8 2.0222 -7.2631 0.1130 16 6 3.5277 -6.0198 -1.3111 17 6 2.5674 -6.1692 -2.4929 18 6 3.2826 -5.7681 -3.7846 19 6 4.0802 -4.4840 -3.5494 20 6 5.5766 -4.7884 -3.6449 21 6 6.0342 -5.4976 -2.3685 22 6 5.5718 -6.9554 -2.4011 23 6 4.5220 -7.1828 -1.3115 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6239 -2.5575 0.8880 27 1 3.1566 -3.4355 -0.0022 28 1 1.3939 -7.4246 -0.6041 29 1 4.0698 -5.0783 -1.4001 30 1 2.2398 -7.2063 -2.5660 31 1 1.7018 -5.5244 -2.3415 32 1 2.5460 -5.5995 -4.5702 33 1 3.9603 -6.5664 -4.0873 34 1 3.8518 -4.0908 -2.5588 35 1 3.8107 -3.7456 -4.3045 36 1 6.1303 -3.8568 -3.7614 37 1 5.7625 -5.4319 -4.5047 38 1 5.6023 -4.9986 -1.5010 39 1 7.1217 -5.4627 -2.3037 40 1 6.4248 -7.6110 -2.2260 41 1 5.1374 -7.1770 -3.3759 42 1 5.0132 -7.2413 -0.3402 43 1 3.9913 -8.1146 -1.5071 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935694423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:51 Heat of formation + Delta-G solvation = -132.534603 kcal Electronic energy + Delta-G solvation = -22233.762859 eV Core-core repulsion = 19084.000569 eV Total energy + Delta-G solvation = -3149.762290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.59554 -39.74480 -37.43777 -36.11792 -34.47030 -33.69704 -33.64285 -30.40541 -28.64909 -26.83915 -25.97915 -24.31882 -22.71678 -21.92645 -21.27693 -20.02203 -19.33305 -18.06448 -17.58232 -17.34243 -16.64834 -16.31958 -15.96992 -15.42768 -15.05238 -14.95776 -14.89787 -14.63924 -14.10731 -14.05661 -13.96881 -13.58677 -13.20213 -12.97636 -12.77951 -12.69599 -12.47853 -12.27345 -12.21403 -11.98714 -11.90446 -11.61762 -11.53326 -11.34364 -11.23196 -10.82231 -10.80373 -10.52045 -10.35674 -9.87331 -8.30083 -6.46834 1.41961 1.45788 1.53967 1.65567 2.29022 2.51942 3.04856 3.28712 3.61305 3.70268 3.83122 3.99952 4.11133 4.19173 4.27697 4.31618 4.38849 4.42422 4.55865 4.59680 4.85401 4.92995 5.02800 5.06863 5.08563 5.11261 5.15584 5.19380 5.21639 5.26972 5.34320 5.41426 5.45200 5.49449 5.56349 5.64350 5.68623 5.72272 5.82811 6.49169 6.63374 6.86267 7.21636 7.41614 8.81896 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.018256 B = 0.005783 C = 0.004867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.347766 B = 4840.883172 C = 5751.628235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.005 3.995 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.554 4.554 8 H 0.084 0.916 9 C 0.268 3.732 10 N -0.699 5.699 11 C 0.470 3.530 12 O -0.600 6.600 13 C 0.106 3.894 14 H 0.138 0.862 15 O -0.545 6.545 16 C -0.123 4.123 17 C -0.120 4.120 18 C -0.117 4.117 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.130 4.130 22 C -0.123 4.123 23 C -0.098 4.098 24 H 0.268 0.732 25 H -0.013 1.013 26 H -0.016 1.016 27 H 0.406 0.594 28 H 0.384 0.616 29 H 0.109 0.891 30 H 0.077 0.923 31 H 0.027 0.973 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.072 0.928 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.561 -12.944 -7.029 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.592 4.592 8 H 0.102 0.898 9 C 0.145 3.855 10 N -0.350 5.350 11 C 0.257 3.743 12 O -0.482 6.482 13 C 0.043 3.957 14 H 0.155 0.845 15 O -0.351 6.351 16 C -0.141 4.141 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.167 4.167 22 C -0.160 4.160 23 C -0.135 4.135 24 H 0.077 0.923 25 H 0.005 0.995 26 H 0.002 0.998 27 H 0.242 0.758 28 H 0.233 0.767 29 H 0.127 0.873 30 H 0.095 0.905 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.088 0.912 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.917 -13.046 -6.493 20.854 hybrid contribution -0.633 1.345 -0.330 1.522 sum 14.284 -11.701 -6.822 19.685 Atomic orbital electron populations 1.70135 1.08302 1.28596 1.49939 1.26047 0.95721 1.03846 0.93837 0.85247 0.77971 0.76718 0.79561 1.18556 1.21160 1.18624 1.21562 0.94264 0.90458 1.52936 0.89758 1.18516 0.88671 0.84408 0.93879 1.46200 1.11035 1.05525 1.72239 1.22411 0.90540 0.85869 0.75508 1.90639 1.19385 1.85476 1.52678 1.22105 0.90826 0.81222 1.01535 0.84452 1.86479 1.58617 1.36162 1.53826 1.22340 0.96832 1.03188 0.91718 1.21690 0.97181 1.01454 0.95437 1.21774 0.99162 0.98255 0.96176 1.21850 0.96343 0.97454 1.01512 1.21676 0.94313 1.00570 0.98497 1.21845 1.00981 0.96001 0.97916 1.21843 0.98325 0.96341 0.99448 1.21506 0.95623 0.96523 0.99867 0.92280 0.99550 0.99801 0.75789 0.76688 0.87308 0.90456 0.95402 0.93025 0.88852 0.92339 0.93302 0.92282 0.90875 0.91595 0.91232 0.90944 0.90699 0.91214 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 13.29 21.45 0.28 -56.04 16 2 C 0.01 0.29 5.46 84.66 0.46 0.75 16 3 Si 0.98 42.09 29.54 68.60 2.03 44.12 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.29 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.91 16 7 C -0.55 -29.96 9.28 25.60 0.24 -29.72 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.75 5.43 85.63 0.46 15.22 16 10 N -0.70 -29.37 5.51 -466.78 -2.57 -31.94 16 11 C 0.47 18.90 5.70 87.66 0.50 19.40 16 12 O -0.60 -30.18 16.29 15.98 0.26 -29.92 16 13 C 0.11 2.97 3.13 29.85 0.09 3.06 16 14 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 15 O -0.55 -15.85 12.59 -129.99 -1.64 -17.48 16 16 C -0.12 -2.70 1.44 -10.78 -0.02 -2.71 16 17 C -0.12 -2.90 4.26 30.60 0.13 -2.77 16 18 C -0.12 -2.45 5.48 30.59 0.17 -2.28 16 19 C -0.13 -3.02 5.47 30.59 0.17 -2.85 16 20 C -0.11 -1.94 5.59 30.60 0.17 -1.76 16 21 C -0.13 -2.00 5.47 30.59 0.17 -1.83 16 22 C -0.12 -1.71 5.48 30.59 0.17 -1.54 16 23 C -0.10 -1.63 4.73 30.60 0.14 -1.48 16 24 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 25 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 27 H 0.41 14.08 8.10 -92.71 -0.75 13.33 16 28 H 0.38 10.32 7.49 -74.06 -0.55 9.77 16 29 H 0.11 2.43 2.61 -2.39 -0.01 2.42 16 30 H 0.08 1.62 7.28 -2.39 -0.02 1.60 16 31 H 0.03 0.90 6.73 -2.39 -0.02 0.88 16 32 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.55 4.69 -2.39 -0.01 1.54 16 34 H 0.06 1.54 5.47 -2.39 -0.01 1.53 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.08 7.47 -2.39 -0.02 1.06 16 38 H 0.07 1.13 5.47 -2.39 -0.01 1.12 16 39 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.07 1.02 4.69 -2.39 -0.01 1.01 16 42 H 0.07 1.10 8.04 -2.39 -0.02 1.08 16 43 H 0.07 1.15 7.81 -2.39 -0.02 1.13 16 Total: -1.00 -70.64 322.37 0.94 -69.69 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.28 Total: 30.10 kcal Atomic # 6 Polarization: -11.39 SS G_CDS: 2.86 Total: -8.53 kcal Atomic # 7 Polarization: -85.69 SS G_CDS: -2.29 Total: -87.98 kcal Atomic # 8 Polarization: -46.03 SS G_CDS: -1.38 Total: -47.40 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -70.64 0.94 -69.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935694423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.843 kcal (2) G-P(sol) polarization free energy of solvation -70.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds