Wall clock time and date at job start Mon Mar 30 2020 01:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47527 * 2 1 4 4 N 1.46502 * 109.47223 * 179.97438 * 3 2 1 5 5 N 1.40585 * 127.38021 * 276.67060 * 4 3 2 6 6 N 1.28916 * 106.81139 * 179.97438 * 5 4 3 7 7 N 1.28418 * 110.31701 * 359.72850 * 6 5 4 8 8 C 1.31470 * 110.50997 * 0.45649 * 7 6 5 9 9 N 1.38385 * 126.44018 * 179.81630 * 8 7 6 10 10 C 1.46903 * 110.99838 * 279.01384 * 9 8 7 11 11 C 1.50705 * 109.46849 * 199.56196 * 10 9 8 12 12 H 1.08001 * 119.99849 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99742 * 179.97438 * 11 10 9 14 14 N 1.31503 * 120.00090 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99564 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47609 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47282 * 120.00340 * 15 13 11 18 18 H 1.48507 * 109.46840 * 240.00129 * 15 13 11 19 19 C 1.46902 * 110.99809 * 42.96611 * 9 8 7 20 20 C 1.53001 * 109.47108 * 66.04970 * 19 9 8 21 21 O 1.42896 * 109.47189 * 64.99431 * 20 19 9 22 22 C 1.42903 * 113.99634 * 180.02562 * 21 20 19 23 23 H 1.08998 * 109.47735 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47104 * 300.00226 * 1 2 3 25 25 H 1.09004 * 109.47349 * 59.99623 * 1 2 3 26 26 H 1.09004 * 109.47104 * 239.99774 * 2 1 3 27 27 H 1.09004 * 109.47349 * 120.00377 * 2 1 3 28 28 H 1.09004 * 109.47113 * 59.99780 * 3 2 1 29 29 H 1.09005 * 109.46783 * 300.00094 * 3 2 1 30 30 H 1.08992 * 109.46994 * 79.56620 * 10 9 8 31 31 H 1.08994 * 109.47010 * 319.55963 * 10 9 8 32 32 H 0.97007 * 120.00107 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.46691 * 186.04374 * 19 9 8 34 34 H 1.08995 * 109.47395 * 306.04702 * 19 9 8 35 35 H 1.09000 * 109.47330 * 184.99933 * 20 19 9 36 36 H 1.09002 * 109.46593 * 304.99603 * 20 19 9 37 37 H 1.09003 * 109.47063 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.47329 * 300.00145 * 22 21 20 39 39 H 1.08995 * 109.47532 * 60.00558 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3581 1.3127 1.1106 6 7 5.5653 1.3647 0.6611 7 7 5.5602 1.5076 -0.6151 8 6 4.3270 1.5665 -1.0670 9 7 3.9419 1.7206 -2.3873 10 6 4.0094 3.1305 -2.7942 11 6 3.1589 3.3406 -4.0205 12 1 2.6224 2.5097 -4.4543 13 6 3.0658 4.5935 -4.5885 14 7 3.7195 5.6050 -4.0604 15 14 2.0110 4.8539 -6.1080 16 1 1.3848 3.5666 -6.5026 17 1 0.9507 5.8499 -5.8098 18 1 2.8597 5.3524 -7.2201 19 6 4.7542 0.8771 -3.2744 20 6 4.4666 -0.5967 -2.9810 21 8 3.1094 -0.8930 -3.3158 22 6 2.7354 -2.2515 -3.0777 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 5.0426 3.3947 -3.0191 31 1 3.6412 3.7603 -1.9845 32 1 3.6543 6.4864 -4.4603 33 1 4.5048 1.0963 -4.3126 34 1 5.8110 1.0822 -3.1034 35 1 5.1325 -1.2222 -3.5756 36 1 4.6313 -0.7951 -1.9219 37 1 1.6918 -2.3954 -3.3574 38 1 3.3653 -2.9116 -3.6740 39 1 2.8639 -2.4839 -2.0206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119720399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:08 Heat of formation + Delta-G solvation = 74.104306 kcal Electronic energy + Delta-G solvation = -21858.097365 eV Core-core repulsion = 18646.048018 eV Total energy + Delta-G solvation = -3212.049347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.47014 -38.14539 -36.64024 -35.89604 -32.86125 -32.44453 -30.92284 -29.64937 -27.29452 -26.56044 -25.89483 -23.02337 -22.93536 -22.49529 -21.38754 -20.21820 -17.17887 -16.73849 -16.28923 -16.01166 -15.67698 -15.54091 -15.17810 -14.65892 -14.35846 -13.82822 -13.59083 -13.35420 -12.85283 -12.57879 -12.33174 -12.14180 -12.10016 -11.70345 -11.56147 -11.52646 -11.31336 -10.93888 -10.89541 -10.73799 -10.62152 -10.54746 -10.25284 -9.96036 -9.76088 -9.49236 -9.32614 -8.62663 -8.04147 -6.18769 -4.22919 1.48416 2.21195 2.77073 3.23576 3.31843 3.36737 3.96433 4.14149 4.39377 4.66257 4.84480 5.01988 5.15758 5.17725 5.18565 5.25987 5.34665 5.45578 5.51860 5.52489 5.58743 5.67675 5.69522 5.79833 5.93281 5.97540 6.04344 6.17387 6.20943 6.31921 6.50597 6.84281 6.99008 7.34340 7.50068 7.60255 7.86477 8.16707 8.85545 8.98114 9.42518 10.91687 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.006932 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.881229 B = 4038.269077 C = 4354.079467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.129 3.871 4 N -0.370 5.370 5 N -0.106 5.106 6 N -0.046 5.046 7 N -0.369 5.369 8 C 0.440 3.560 9 N -0.456 5.456 10 C 0.205 3.795 11 C -0.513 4.513 12 H 0.074 0.926 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.903 3.097 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.283 1.283 19 C 0.071 3.929 20 C 0.065 3.935 21 O -0.367 6.367 22 C 0.030 3.970 23 H 0.059 0.941 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.117 0.883 30 H 0.017 0.983 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.083 0.917 38 H 0.036 0.964 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -12.449 3.845 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.007 3.993 4 N -0.167 5.167 5 N -0.093 5.093 6 N -0.042 5.042 7 N -0.228 5.228 8 C 0.075 3.925 9 N -0.184 5.184 10 C 0.082 3.918 11 C -0.552 4.552 12 H 0.092 0.908 13 C -0.143 4.143 14 N -0.532 5.532 15 Si 0.730 3.270 16 H -0.194 1.194 17 H -0.210 1.210 18 H -0.209 1.209 19 C -0.056 4.056 20 C -0.012 4.012 21 O -0.285 6.285 22 C -0.067 4.067 23 H 0.078 0.922 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.102 0.898 38 H 0.054 0.946 39 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.394 -12.360 4.715 13.939 hybrid contribution -0.472 0.377 -1.041 1.204 sum -4.866 -11.983 3.674 13.444 Atomic orbital electron populations 1.21653 0.94058 1.02173 1.02462 1.21860 0.96940 0.95343 1.03271 1.22052 0.72268 0.99298 1.05664 1.51518 1.09329 1.50630 1.05257 1.82411 0.95369 1.24025 1.07531 1.77798 1.13006 1.09833 1.03586 1.74915 1.18642 1.25679 1.03515 1.23606 0.84892 0.92833 0.91201 1.59446 1.51980 1.13883 0.93109 1.19966 0.97887 0.76919 0.97047 1.21085 1.28702 0.95132 1.10263 0.90802 1.24988 0.95869 0.95727 0.97744 1.69970 1.41882 1.00756 1.40617 0.86356 0.79972 0.78370 0.82271 1.19352 1.20985 1.20946 1.22194 0.95652 0.88950 0.98819 1.22636 0.83655 0.96672 0.98238 1.88078 1.27854 1.26209 1.86377 1.22699 1.00816 0.84171 0.99021 0.92221 0.92533 0.91675 0.90376 0.91688 0.88805 0.86446 0.96524 0.95238 0.92620 0.87050 0.91368 0.92770 0.94665 0.89825 0.94583 0.94926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 37.16 0.37 -1.03 16 2 C -0.14 -1.64 6.26 -26.73 -0.17 -1.81 16 3 C 0.13 1.87 6.52 -4.04 -0.03 1.84 16 4 N -0.37 -6.72 3.69 -61.86 -0.23 -6.94 16 5 N -0.11 -2.04 13.93 60.35 0.84 -1.20 16 6 N -0.05 -0.95 13.38 60.35 0.81 -0.14 16 7 N -0.37 -7.79 11.56 30.10 0.35 -7.44 16 8 C 0.44 8.85 5.39 -320.41 -1.73 7.13 16 9 N -0.46 -9.36 4.34 -176.23 -0.76 -10.12 16 10 C 0.20 5.02 4.70 -4.97 -0.02 4.99 16 11 C -0.51 -13.25 8.56 -34.44 -0.29 -13.55 16 12 H 0.07 1.89 7.77 -52.49 -0.41 1.48 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.89 -25.27 13.28 55.43 0.74 -24.53 16 15 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 16 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.07 1.30 5.06 -3.82 -0.02 1.28 16 20 C 0.07 1.02 6.01 37.16 0.22 1.24 16 21 O -0.37 -5.81 10.65 -35.23 -0.38 -6.18 16 22 C 0.03 0.35 11.01 101.05 1.11 1.46 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.12 1.83 8.07 -51.93 -0.42 1.41 16 30 H 0.02 0.45 8.00 -51.93 -0.42 0.03 16 31 H 0.03 0.79 7.91 -51.93 -0.41 0.38 16 32 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.11 2.10 7.40 -51.93 -0.38 1.72 16 34 H 0.07 1.24 7.70 -51.93 -0.40 0.84 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.04 0.58 7.25 -51.93 -0.38 0.20 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 334.41 15.07 5.04 5.04 Total: -1.00 -29.69 334.41 -5.45 -35.13 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.18 Total: -2.06 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -0.65 Total: 3.03 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 1.74 Total: -50.38 kcal Atomic # 8 Polarization: -5.81 SS G_CDS: -0.38 Total: -6.18 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.69 -5.45 -35.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119720399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.238 kcal (2) G-P(sol) polarization free energy of solvation -29.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds