Wall clock time and date at job start Mon Mar 30 2020 01:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47527 * 2 1 4 4 N 1.46502 * 109.47223 * 179.97438 * 3 2 1 5 5 N 1.40585 * 127.38021 * 276.67060 * 4 3 2 6 6 N 1.28916 * 106.81139 * 179.97438 * 5 4 3 7 7 N 1.28418 * 110.31701 * 359.72850 * 6 5 4 8 8 C 1.31470 * 110.50997 * 0.45649 * 7 6 5 9 9 N 1.38385 * 126.44018 * 179.81630 * 8 7 6 10 10 C 1.46903 * 110.99838 * 279.01384 * 9 8 7 11 11 C 1.50705 * 109.46849 * 199.56196 * 10 9 8 12 12 H 1.08001 * 119.99849 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99742 * 179.97438 * 11 10 9 14 14 N 1.31503 * 120.00090 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99564 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47609 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47282 * 120.00340 * 15 13 11 18 18 H 1.48507 * 109.46840 * 240.00129 * 15 13 11 19 19 C 1.46902 * 110.99809 * 42.96611 * 9 8 7 20 20 C 1.53001 * 109.47108 * 66.04970 * 19 9 8 21 21 O 1.42896 * 109.47189 * 64.99431 * 20 19 9 22 22 C 1.42903 * 113.99634 * 180.02562 * 21 20 19 23 23 H 1.08998 * 109.47735 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47104 * 300.00226 * 1 2 3 25 25 H 1.09004 * 109.47349 * 59.99623 * 1 2 3 26 26 H 1.09004 * 109.47104 * 239.99774 * 2 1 3 27 27 H 1.09004 * 109.47349 * 120.00377 * 2 1 3 28 28 H 1.09004 * 109.47113 * 59.99780 * 3 2 1 29 29 H 1.09005 * 109.46783 * 300.00094 * 3 2 1 30 30 H 1.08992 * 109.46994 * 79.56620 * 10 9 8 31 31 H 1.08994 * 109.47010 * 319.55963 * 10 9 8 32 32 H 0.97007 * 120.00107 * 179.97438 * 14 13 11 33 33 H 1.08997 * 109.46691 * 186.04374 * 19 9 8 34 34 H 1.08995 * 109.47395 * 306.04702 * 19 9 8 35 35 H 1.09000 * 109.47330 * 184.99933 * 20 19 9 36 36 H 1.09002 * 109.46593 * 304.99603 * 20 19 9 37 37 H 1.09003 * 109.47063 * 180.02562 * 22 21 20 38 38 H 1.08996 * 109.47329 * 300.00145 * 22 21 20 39 39 H 1.08995 * 109.47532 * 60.00558 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 7 4.3581 1.3127 1.1106 6 7 5.5653 1.3647 0.6611 7 7 5.5602 1.5076 -0.6151 8 6 4.3270 1.5665 -1.0670 9 7 3.9419 1.7206 -2.3873 10 6 4.0094 3.1305 -2.7942 11 6 3.1589 3.3406 -4.0205 12 1 2.6224 2.5097 -4.4543 13 6 3.0658 4.5935 -4.5885 14 7 3.7195 5.6050 -4.0604 15 14 2.0110 4.8539 -6.1080 16 1 1.3848 3.5666 -6.5026 17 1 0.9507 5.8499 -5.8098 18 1 2.8597 5.3524 -7.2201 19 6 4.7542 0.8771 -3.2744 20 6 4.4666 -0.5967 -2.9810 21 8 3.1094 -0.8930 -3.3158 22 6 2.7354 -2.2515 -3.0777 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6767 1.9563 -0.8900 30 1 5.0426 3.3947 -3.0191 31 1 3.6412 3.7603 -1.9845 32 1 3.6543 6.4864 -4.4603 33 1 4.5048 1.0963 -4.3126 34 1 5.8110 1.0822 -3.1034 35 1 5.1325 -1.2222 -3.5756 36 1 4.6313 -0.7951 -1.9219 37 1 1.6918 -2.3954 -3.3574 38 1 3.3653 -2.9116 -3.6740 39 1 2.8639 -2.4839 -2.0206 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119720399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:08 Heat of formation + Delta-G solvation = 54.558004 kcal Electronic energy + Delta-G solvation = -21858.944956 eV Core-core repulsion = 18646.048018 eV Total energy + Delta-G solvation = -3212.896938 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.05019 -39.55330 -38.04431 -37.15548 -34.85943 -33.67798 -32.49188 -31.19326 -28.84878 -27.92439 -27.05547 -24.63443 -24.43969 -24.07950 -22.54611 -21.77123 -18.84171 -18.37353 -17.70860 -17.59120 -17.11474 -16.84395 -16.43956 -16.23487 -15.67663 -15.31432 -14.93033 -14.60420 -14.37976 -14.10302 -13.79656 -13.68058 -13.21291 -13.01853 -12.90079 -12.79189 -12.68846 -12.51709 -12.48340 -12.17307 -12.09677 -11.97013 -11.73306 -11.58773 -11.33267 -11.08529 -10.66862 -10.59972 -9.77703 -8.23794 -6.35188 -0.08562 0.74999 1.13837 1.45631 1.47558 1.61064 2.37808 2.63443 2.89599 3.11070 3.27668 3.59250 3.79935 3.92377 4.12381 4.13684 4.20209 4.24691 4.40302 4.48876 4.51024 4.52039 4.61593 4.68217 4.74479 4.80276 4.86303 4.89627 5.01614 5.08051 5.12904 5.20232 5.40192 5.59558 5.76187 5.87260 6.22103 6.32279 6.79243 7.35085 7.38512 8.87781 Molecular weight = 269.16amu Principal moments of inertia in cm(-1) A = 0.014483 B = 0.006932 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.881229 B = 4038.269077 C = 4354.079467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.124 4.124 3 C 0.119 3.881 4 N -0.359 5.359 5 N -0.098 5.098 6 N -0.060 5.060 7 N -0.384 5.384 8 C 0.429 3.571 9 N -0.450 5.450 10 C 0.225 3.775 11 C -0.516 4.516 12 H 0.077 0.923 13 C 0.008 3.992 14 N -0.933 5.933 15 Si 0.973 3.027 16 H -0.258 1.258 17 H -0.281 1.281 18 H -0.281 1.281 19 C 0.068 3.932 20 C 0.078 3.922 21 O -0.392 6.392 22 C 0.026 3.974 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.117 0.883 29 H 0.105 0.895 30 H -0.013 1.013 31 H 0.000 1.000 32 H 0.266 0.734 33 H 0.103 0.897 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.025 0.975 37 H 0.099 0.901 38 H 0.052 0.948 39 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.414 -13.995 3.482 15.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.163 4.163 3 C -0.002 4.002 4 N -0.157 5.157 5 N -0.085 5.085 6 N -0.056 5.056 7 N -0.243 5.243 8 C 0.063 3.937 9 N -0.177 5.177 10 C 0.100 3.900 11 C -0.554 4.554 12 H 0.095 0.905 13 C -0.191 4.191 14 N -0.573 5.573 15 Si 0.797 3.203 16 H -0.181 1.181 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.059 4.059 20 C 0.001 3.999 21 O -0.311 6.311 22 C -0.070 4.070 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.005 0.995 31 H 0.019 0.981 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.101 0.899 36 H 0.044 0.956 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -6.074 -13.944 4.366 15.824 hybrid contribution 0.024 0.815 -0.852 1.180 sum -6.050 -13.129 3.513 14.876 Atomic orbital electron populations 1.21634 0.91779 1.03407 1.02918 1.21795 0.98678 0.93132 1.02683 1.22461 0.70151 1.01372 1.06196 1.51801 1.10462 1.49098 1.04342 1.82333 0.95192 1.23279 1.07716 1.77780 1.13590 1.10842 1.03384 1.74840 1.19532 1.25960 1.03928 1.23514 0.85112 0.93810 0.91300 1.59362 1.52694 1.11871 0.93763 1.19513 0.95679 0.78967 0.95827 1.21295 1.28428 0.95278 1.10438 0.90483 1.25877 0.97008 0.95398 1.00778 1.70099 1.43539 1.01310 1.42349 0.85276 0.78134 0.78600 0.78291 1.18131 1.20665 1.20679 1.22268 0.95142 0.90646 0.97838 1.22453 0.84577 0.94785 0.98090 1.88028 1.27661 1.28820 1.86568 1.22901 1.02049 0.82357 0.99727 0.90599 0.91114 0.92202 0.91886 0.91265 0.86466 0.87687 0.99535 0.98147 0.92503 0.87869 0.91804 0.89946 0.95631 0.88300 0.92902 0.94483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 71.98 0.71 -1.61 16 2 C -0.12 -2.79 6.26 30.59 0.19 -2.60 16 3 C 0.12 3.31 6.52 86.38 0.56 3.88 16 4 N -0.36 -12.93 3.69 -349.61 -1.29 -14.22 16 5 N -0.10 -3.70 13.93 37.02 0.52 -3.18 16 6 N -0.06 -2.47 13.38 37.02 0.50 -1.98 16 7 N -0.38 -16.42 11.56 -58.69 -0.68 -17.10 16 8 C 0.43 17.45 5.39 260.65 1.41 18.85 16 9 N -0.45 -18.77 4.34 -711.45 -3.09 -21.85 16 10 C 0.22 11.39 4.70 85.56 0.40 11.79 16 11 C -0.52 -26.95 8.56 25.60 0.22 -26.73 16 12 H 0.08 3.92 7.77 -2.91 -0.02 3.90 16 13 C 0.01 0.45 5.46 84.66 0.46 0.91 16 14 N -0.93 -53.74 13.28 21.45 0.28 -53.46 16 15 Si 0.97 41.68 29.54 68.60 2.03 43.70 16 16 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 19 C 0.07 2.50 5.06 86.30 0.44 2.94 16 20 C 0.08 2.35 6.01 71.98 0.43 2.78 16 21 O -0.39 -11.81 10.65 -148.98 -1.59 -13.39 16 22 C 0.03 0.54 11.01 113.37 1.25 1.79 16 23 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 25 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 26 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 28 H 0.12 2.72 8.14 -2.38 -0.02 2.70 16 29 H 0.10 3.25 8.07 -2.38 -0.02 3.23 16 30 H -0.01 -0.74 8.00 -2.39 -0.02 -0.76 16 31 H 0.00 0.02 7.91 -2.39 -0.02 0.01 16 32 H 0.27 14.44 8.31 -92.70 -0.77 13.67 16 33 H 0.10 3.94 7.40 -2.39 -0.02 3.92 16 34 H 0.06 2.38 7.70 -2.39 -0.02 2.36 16 35 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.03 0.82 7.25 -2.39 -0.02 0.80 16 37 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -64.03 334.41 3.78 -60.26 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.02 Total: 9.23 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: 6.07 Total: 12.00 kcal Atomic # 7 Polarization: -108.03 SS G_CDS: -3.76 Total: -111.79 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: -1.59 Total: -13.39 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Total: -64.03 3.78 -60.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119720399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.813 kcal (2) G-P(sol) polarization free energy of solvation -64.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds