Wall clock time and date at job start Mon Mar 30 2020 00:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36125 * 120.17469 * 2 1 4 4 C 1.39336 * 120.98764 * 179.97438 * 3 2 1 5 5 C 1.36127 * 120.99117 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.17019 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47015 * 105.23579 * 6 5 4 8 8 C 1.46895 * 110.99793 * 288.00603 * 7 6 5 9 9 C 1.46900 * 111.00266 * 164.05054 * 7 6 5 10 10 C 1.50701 * 109.47307 * 189.99665 * 9 7 6 11 11 H 1.08007 * 119.99779 * 0.02562 * 10 9 7 12 12 C 1.37874 * 120.00048 * 179.97438 * 10 9 7 13 13 N 1.31514 * 119.99880 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99924 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 60.00325 * 14 12 10 16 16 H 1.48501 * 109.47084 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47042 * 300.00458 * 14 12 10 18 18 C 1.40503 * 119.65138 * 359.97438 * 5 4 3 19 19 C 1.40544 * 121.28473 * 179.97438 * 18 5 4 20 20 C 1.36087 * 119.65062 * 180.02562 * 19 18 5 21 21 C 1.39387 * 120.99571 * 0.02562 * 20 19 18 22 22 C 1.36087 * 120.99005 * 359.95772 * 21 20 19 23 23 C 1.40511 * 120.17359 * 179.71534 * 2 1 3 24 24 H 1.08996 * 109.46529 * 90.00507 * 1 2 3 25 25 H 1.08999 * 109.46522 * 330.00867 * 1 2 3 26 26 H 1.08996 * 109.46924 * 209.99999 * 1 2 3 27 27 H 1.08002 * 119.50756 * 359.97294 * 3 2 1 28 28 H 1.08005 * 119.50311 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46990 * 225.22748 * 6 5 4 30 30 H 1.08995 * 109.47418 * 345.23621 * 6 5 4 31 31 H 1.09004 * 109.47694 * 62.34996 * 8 7 6 32 32 H 1.08997 * 109.47662 * 182.35054 * 8 7 6 33 33 H 1.09003 * 109.47335 * 302.35187 * 8 7 6 34 34 H 1.09001 * 109.46879 * 310.00110 * 9 7 6 35 35 H 1.09002 * 109.47034 * 69.99788 * 9 7 6 36 36 H 0.97000 * 119.99562 * 180.02562 * 13 12 10 37 37 H 1.08003 * 120.18164 * 0.03873 * 19 18 5 38 38 H 1.08004 * 119.50667 * 180.02562 * 20 19 18 39 39 H 1.07995 * 119.50555 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.17339 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1913 1.1768 0.0000 4 6 3.5845 1.1966 0.0005 5 6 4.3019 0.0397 0.0005 6 6 5.8083 0.0826 0.0017 7 7 6.3071 -0.2678 1.3383 8 6 6.0511 0.8157 2.2965 9 6 7.7360 -0.6058 1.2951 10 6 8.1539 -1.1918 2.6191 11 1 7.4302 -1.3025 3.4131 12 6 9.4599 -1.5875 2.8164 13 7 10.3409 -1.4531 1.8493 14 14 9.9777 -2.3146 4.4573 15 1 9.1863 -3.5420 4.7267 16 1 11.4222 -2.6561 4.4137 17 1 9.7362 -1.3232 5.5363 18 6 3.6305 -1.1946 0.0006 19 6 4.3369 -2.4096 0.0000 20 6 3.6528 -3.5860 -0.0005 21 6 2.2590 -3.6059 -0.0010 22 6 1.5418 -2.4494 -0.0002 23 6 2.2133 -1.2147 0.0060 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3632 0.8901 0.5137 26 1 -0.3633 -0.8900 0.5138 27 1 1.6461 2.1091 -0.0004 28 1 4.1030 2.1440 0.0009 29 1 6.1926 -0.6301 -0.7279 30 1 6.1433 1.0864 -0.2594 31 1 4.9763 0.9702 2.3919 32 1 6.4672 0.5479 3.2677 33 1 6.5198 1.7334 1.9410 34 1 7.9134 -1.3336 0.5033 35 1 8.3166 0.2953 1.0971 36 1 11.2596 -1.7318 1.9880 37 1 5.4169 -2.4098 0.0003 38 1 4.1979 -4.5184 -0.0004 39 1 1.7406 -4.5533 -0.0018 40 1 0.4622 -2.4802 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138013638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:38 Heat of formation + Delta-G solvation = 39.113133 kcal Electronic energy + Delta-G solvation = -20046.103030 eV Core-core repulsion = 17211.092865 eV Total energy + Delta-G solvation = -2835.010166 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36432 -36.95897 -36.15460 -33.74991 -32.31856 -30.09621 -29.80466 -28.44624 -26.98676 -25.51897 -23.37658 -22.91009 -22.74391 -20.58831 -19.53643 -17.24636 -16.71726 -16.32358 -15.61910 -14.92407 -14.52257 -14.23227 -14.18775 -13.77721 -13.71459 -13.35918 -13.17562 -12.75279 -12.56119 -12.27330 -11.94825 -11.90154 -11.63604 -11.39472 -11.20698 -10.87501 -10.84562 -10.69137 -10.59001 -10.50884 -10.32132 -9.81941 -9.40319 -9.20824 -8.44040 -8.34283 -7.51149 -7.22666 -6.03029 -4.04276 0.79942 1.29069 2.31982 3.23787 3.33766 3.37620 3.41072 4.33159 4.44714 4.77025 4.91237 5.04638 5.08141 5.12740 5.26852 5.32213 5.37083 5.45429 5.56037 5.64149 5.70402 5.72989 5.78648 5.86574 6.04442 6.17269 6.22597 6.31871 6.37074 6.40314 6.49752 6.54695 6.70846 6.77751 6.82191 6.99678 7.15066 7.26707 7.30334 7.33280 7.79309 8.06273 8.18789 8.53277 9.03274 9.59973 11.07728 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.004853 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.467137 B = 5768.126738 C = 6387.207115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.091 4.091 3 C -0.113 4.113 4 C -0.124 4.124 5 C -0.043 4.043 6 C 0.086 3.914 7 N -0.532 5.532 8 C 0.038 3.962 9 C 0.193 3.807 10 C -0.507 4.507 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.033 4.033 19 C -0.072 4.072 20 C -0.133 4.133 21 C -0.112 4.112 22 C -0.124 4.124 23 C -0.047 4.047 24 H 0.067 0.933 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.116 0.884 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.075 0.925 33 H 0.010 0.990 34 H 0.029 0.971 35 H -0.009 1.009 36 H 0.262 0.738 37 H 0.139 0.861 38 H 0.120 0.880 39 H 0.116 0.884 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.542 1.683 -5.462 18.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.091 4.091 3 C -0.131 4.131 4 C -0.143 4.143 5 C -0.044 4.044 6 C -0.042 4.042 7 N -0.256 5.256 8 C -0.111 4.111 9 C 0.068 3.932 10 C -0.545 4.545 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.725 3.275 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.203 1.203 18 C -0.033 4.033 19 C -0.089 4.089 20 C -0.151 4.151 21 C -0.130 4.130 22 C -0.142 4.142 23 C -0.047 4.047 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.135 0.865 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.048 0.952 35 H 0.009 0.991 36 H 0.071 0.929 37 H 0.156 0.844 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.574 1.229 -5.340 18.409 hybrid contribution 0.915 0.352 0.656 1.179 sum -16.659 1.581 -4.684 17.377 Atomic orbital electron populations 1.20757 0.91455 1.02563 1.01995 1.19614 0.95523 0.92462 1.01526 1.20605 0.94078 0.97234 1.01184 1.20680 0.93750 0.97840 1.02047 1.19855 0.95907 0.92031 0.96619 1.21068 0.89721 0.99595 0.93815 1.62129 1.21270 1.38204 1.04033 1.22223 0.99046 0.91696 0.98092 1.19763 0.80216 0.95144 0.98102 1.21113 0.94294 1.40481 0.98622 0.91900 1.24971 0.96543 0.96045 0.96948 1.69948 1.03533 1.48131 1.32271 0.86571 0.77297 0.79687 0.83924 1.20151 1.21365 1.20301 1.17904 0.91882 0.93656 0.99906 1.21303 1.00991 0.91142 0.95504 1.20863 0.94116 0.98424 1.01722 1.20812 0.94349 0.97906 0.99978 1.20915 0.99302 0.91740 1.02256 1.17912 0.92525 0.93218 1.01074 0.91442 0.91709 0.91521 0.86555 0.86477 0.90345 0.94735 0.93599 0.90664 0.97147 0.95249 0.99108 0.92878 0.84369 0.86209 0.86588 0.86067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 9.54 36.01 0.34 -0.72 16 2 C -0.09 -1.20 5.89 -104.52 -0.62 -1.81 16 3 C -0.11 -1.48 9.59 -39.93 -0.38 -1.86 16 4 C -0.12 -1.82 9.20 -39.93 -0.37 -2.19 16 5 C -0.04 -0.73 4.68 -104.53 -0.49 -1.22 16 6 C 0.09 1.58 4.27 -4.98 -0.02 1.56 16 7 N -0.53 -11.49 4.49 -245.83 -1.10 -12.60 16 8 C 0.04 0.77 9.23 60.06 0.55 1.32 16 9 C 0.19 4.96 4.71 -4.98 -0.02 4.94 16 10 C -0.51 -14.15 8.42 -34.44 -0.29 -14.44 16 11 H 0.06 1.75 7.14 -52.48 -0.37 1.38 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 14 Si 0.90 21.67 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 C -0.03 -0.56 5.74 -106.84 -0.61 -1.17 16 19 C -0.07 -1.21 9.26 -39.49 -0.37 -1.58 16 20 C -0.13 -1.95 9.95 -39.93 -0.40 -2.35 16 21 C -0.11 -1.46 9.95 -39.93 -0.40 -1.86 16 22 C -0.12 -1.63 9.28 -39.48 -0.37 -1.99 16 23 C -0.05 -0.71 5.74 -106.83 -0.61 -1.32 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 26 H 0.07 0.59 6.43 -51.93 -0.33 0.26 16 27 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 28 H 0.12 1.55 7.96 -52.48 -0.42 1.13 16 29 H 0.08 1.43 6.97 -51.93 -0.36 1.07 16 30 H 0.03 0.61 7.78 -51.93 -0.40 0.21 16 31 H 0.05 0.84 7.25 -51.93 -0.38 0.46 16 32 H 0.07 1.62 6.71 -51.93 -0.35 1.27 16 33 H 0.01 0.20 8.07 -51.93 -0.42 -0.22 16 34 H 0.03 0.80 7.86 -51.93 -0.41 0.39 16 35 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.14 2.53 6.61 -52.48 -0.35 2.19 16 38 H 0.12 1.55 8.06 -52.48 -0.42 1.12 16 39 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 40 H 0.12 1.26 6.37 -52.49 -0.33 0.92 16 LS Contribution 325.51 15.07 4.91 4.91 Total: -1.00 -30.21 325.51 -10.42 -40.62 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.79 Total: -0.54 kcal Atomic # 6 Polarization: -19.07 SS G_CDS: -4.14 Total: -23.21 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.37 Total: -38.42 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.21 -10.42 -40.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138013638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.738 kcal (2) G-P(sol) polarization free energy of solvation -30.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds