Wall clock time and date at job start Mon Mar 30 2020 00:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36125 * 120.17469 * 2 1 4 4 C 1.39336 * 120.98764 * 179.97438 * 3 2 1 5 5 C 1.36127 * 120.99117 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.17019 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47015 * 105.23579 * 6 5 4 8 8 C 1.46895 * 110.99793 * 288.00603 * 7 6 5 9 9 C 1.46900 * 111.00266 * 164.05054 * 7 6 5 10 10 C 1.50701 * 109.47307 * 189.99665 * 9 7 6 11 11 H 1.08007 * 119.99779 * 0.02562 * 10 9 7 12 12 C 1.37874 * 120.00048 * 179.97438 * 10 9 7 13 13 N 1.31514 * 119.99880 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99924 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47061 * 60.00325 * 14 12 10 16 16 H 1.48501 * 109.47084 * 180.02562 * 14 12 10 17 17 H 1.48499 * 109.47042 * 300.00458 * 14 12 10 18 18 C 1.40503 * 119.65138 * 359.97438 * 5 4 3 19 19 C 1.40544 * 121.28473 * 179.97438 * 18 5 4 20 20 C 1.36087 * 119.65062 * 180.02562 * 19 18 5 21 21 C 1.39387 * 120.99571 * 0.02562 * 20 19 18 22 22 C 1.36087 * 120.99005 * 359.95772 * 21 20 19 23 23 C 1.40511 * 120.17359 * 179.71534 * 2 1 3 24 24 H 1.08996 * 109.46529 * 90.00507 * 1 2 3 25 25 H 1.08999 * 109.46522 * 330.00867 * 1 2 3 26 26 H 1.08996 * 109.46924 * 209.99999 * 1 2 3 27 27 H 1.08002 * 119.50756 * 359.97294 * 3 2 1 28 28 H 1.08005 * 119.50311 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46990 * 225.22748 * 6 5 4 30 30 H 1.08995 * 109.47418 * 345.23621 * 6 5 4 31 31 H 1.09004 * 109.47694 * 62.34996 * 8 7 6 32 32 H 1.08997 * 109.47662 * 182.35054 * 8 7 6 33 33 H 1.09003 * 109.47335 * 302.35187 * 8 7 6 34 34 H 1.09001 * 109.46879 * 310.00110 * 9 7 6 35 35 H 1.09002 * 109.47034 * 69.99788 * 9 7 6 36 36 H 0.97000 * 119.99562 * 180.02562 * 13 12 10 37 37 H 1.08003 * 120.18164 * 0.03873 * 19 18 5 38 38 H 1.08004 * 119.50667 * 180.02562 * 20 19 18 39 39 H 1.07995 * 119.50555 * 179.97438 * 21 20 19 40 40 H 1.08002 * 120.17339 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1913 1.1768 0.0000 4 6 3.5845 1.1966 0.0005 5 6 4.3019 0.0397 0.0005 6 6 5.8083 0.0826 0.0017 7 7 6.3071 -0.2678 1.3383 8 6 6.0511 0.8157 2.2965 9 6 7.7360 -0.6058 1.2951 10 6 8.1539 -1.1918 2.6191 11 1 7.4302 -1.3025 3.4131 12 6 9.4599 -1.5875 2.8164 13 7 10.3409 -1.4531 1.8493 14 14 9.9777 -2.3146 4.4573 15 1 9.1863 -3.5420 4.7267 16 1 11.4222 -2.6561 4.4137 17 1 9.7362 -1.3232 5.5363 18 6 3.6305 -1.1946 0.0006 19 6 4.3369 -2.4096 0.0000 20 6 3.6528 -3.5860 -0.0005 21 6 2.2590 -3.6059 -0.0010 22 6 1.5418 -2.4494 -0.0002 23 6 2.2133 -1.2147 0.0060 24 1 -0.3632 -0.0001 -1.0277 25 1 -0.3632 0.8901 0.5137 26 1 -0.3633 -0.8900 0.5138 27 1 1.6461 2.1091 -0.0004 28 1 4.1030 2.1440 0.0009 29 1 6.1926 -0.6301 -0.7279 30 1 6.1433 1.0864 -0.2594 31 1 4.9763 0.9702 2.3919 32 1 6.4672 0.5479 3.2677 33 1 6.5198 1.7334 1.9410 34 1 7.9134 -1.3336 0.5033 35 1 8.3166 0.2953 1.0971 36 1 11.2596 -1.7318 1.9880 37 1 5.4169 -2.4098 0.0003 38 1 4.1979 -4.5184 -0.0004 39 1 1.7406 -4.5533 -0.0018 40 1 0.4622 -2.4802 -0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138013638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:37 Heat of formation + Delta-G solvation = 23.078074 kcal Electronic energy + Delta-G solvation = -20046.798363 eV Core-core repulsion = 17211.092865 eV Total energy + Delta-G solvation = -2835.705498 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.48203 -38.50515 -37.32144 -35.22786 -34.20134 -31.17890 -30.89524 -29.89223 -28.80506 -26.99185 -24.97872 -24.07477 -23.87237 -22.33186 -20.76543 -18.58176 -18.25751 -17.77158 -16.91851 -16.70376 -16.03929 -15.86425 -15.35454 -15.13396 -14.83201 -14.75765 -14.29013 -14.06515 -13.82227 -13.55336 -13.43795 -13.26231 -12.93412 -12.78478 -12.72458 -12.63314 -12.52683 -12.32251 -11.96278 -11.91936 -11.65430 -11.54012 -11.22360 -10.62960 -10.50036 -9.44820 -9.06436 -8.57309 -8.21164 -6.31637 -0.31202 0.18402 1.18783 1.39703 1.42771 1.50838 2.14632 2.39534 3.10580 3.15896 3.49137 3.70972 3.90563 4.00686 4.09321 4.18693 4.25828 4.34120 4.45635 4.53474 4.59815 4.67139 4.69223 4.69523 4.78298 4.89362 4.91824 5.02617 5.14597 5.20983 5.23158 5.25678 5.33452 5.43094 5.45567 5.60378 5.62676 5.73685 5.87193 6.00450 6.06828 6.22089 6.30151 6.58561 6.83633 7.37884 8.89317 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.023654 B = 0.004853 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.467137 B = 5768.126738 C = 6387.207115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.082 4.082 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.077 4.077 6 C 0.094 3.906 7 N -0.538 5.538 8 C 0.045 3.955 9 C 0.210 3.790 10 C -0.523 4.523 11 H 0.060 0.940 12 C 0.004 3.996 13 N -0.934 5.934 14 Si 0.968 3.032 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.268 1.268 18 C -0.051 4.051 19 C -0.109 4.109 20 C -0.131 4.131 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.070 4.070 24 H 0.084 0.916 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.149 0.851 28 H 0.128 0.872 29 H 0.064 0.936 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.015 0.985 34 H 0.004 0.996 35 H -0.037 1.037 36 H 0.265 0.735 37 H 0.106 0.894 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.837 1.714 -4.651 21.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.082 4.082 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.077 4.077 6 C -0.033 4.033 7 N -0.261 5.261 8 C -0.103 4.103 9 C 0.084 3.916 10 C -0.561 4.561 11 H 0.078 0.922 12 C -0.194 4.194 13 N -0.574 5.574 14 Si 0.792 3.208 15 H -0.195 1.195 16 H -0.207 1.207 17 H -0.193 1.193 18 C -0.051 4.051 19 C -0.127 4.127 20 C -0.149 4.149 21 C -0.136 4.136 22 C -0.132 4.132 23 C -0.070 4.070 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.166 0.834 28 H 0.146 0.854 29 H 0.082 0.918 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.022 0.978 35 H -0.019 1.019 36 H 0.074 0.926 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.168 0.832 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -20.891 1.270 -4.535 21.415 hybrid contribution 1.829 0.353 0.328 1.891 sum -19.062 1.624 -4.207 19.588 Atomic orbital electron populations 1.20859 0.88388 1.03988 1.03432 1.20102 0.97662 0.91584 0.98873 1.20938 0.93292 0.98794 1.01063 1.20915 0.94908 0.97393 1.00235 1.19661 0.94354 0.93264 1.00442 1.20966 0.91646 0.99107 0.91630 1.62026 1.18241 1.39562 1.06316 1.22154 1.00225 0.91216 0.96709 1.19390 0.82584 0.93083 0.96572 1.21390 0.94686 1.40800 0.99232 0.92176 1.25875 0.96461 0.96234 1.00809 1.70076 1.03935 1.48959 1.34445 0.85463 0.77047 0.79033 0.79246 1.19457 1.20657 1.19255 1.18075 0.93252 0.93323 1.00442 1.21164 0.99748 0.92763 0.99043 1.21117 0.95522 0.97939 1.00352 1.21150 0.93349 0.99652 0.99497 1.21343 1.01008 0.90813 1.00017 1.18260 0.91770 0.95125 1.01813 0.89794 0.89995 0.90480 0.83364 0.85382 0.91787 0.94326 0.91463 0.92432 0.96650 0.97831 1.01923 0.92640 0.87545 0.85261 0.83198 0.82578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.58 9.54 71.24 0.68 -0.91 16 2 C -0.08 -1.90 5.89 -19.80 -0.12 -2.01 16 3 C -0.12 -2.86 9.59 22.04 0.21 -2.65 16 4 C -0.12 -3.27 9.20 22.04 0.20 -3.07 16 5 C -0.08 -2.62 4.68 -19.80 -0.09 -2.72 16 6 C 0.09 3.68 4.27 85.56 0.37 4.04 16 7 N -0.54 -24.49 4.49 -931.66 -4.19 -28.68 16 8 C 0.05 1.86 9.23 127.69 1.18 3.04 16 9 C 0.21 11.51 4.71 85.56 0.40 11.92 16 10 C -0.52 -30.33 8.42 25.60 0.22 -30.12 16 11 H 0.06 3.45 7.14 -2.91 -0.02 3.43 16 12 C 0.00 0.25 5.46 84.65 0.46 0.71 16 13 N -0.93 -56.89 13.29 21.45 0.28 -56.61 16 14 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 17 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 18 C -0.05 -1.74 5.74 -21.30 -0.12 -1.86 16 19 C -0.11 -3.91 9.26 22.33 0.21 -3.70 16 20 C -0.13 -3.88 9.95 22.05 0.22 -3.66 16 21 C -0.12 -2.81 9.95 22.05 0.22 -2.59 16 22 C -0.11 -2.64 9.28 22.33 0.21 -2.44 16 23 C -0.07 -1.97 5.74 -21.30 -0.12 -2.09 16 24 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.08 0.94 8.08 -2.39 -0.02 0.92 16 26 H 0.08 0.97 6.43 -2.39 -0.02 0.95 16 27 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 28 H 0.13 3.22 7.96 -2.91 -0.02 3.20 16 29 H 0.06 2.61 6.97 -2.39 -0.02 2.59 16 30 H 0.04 1.44 7.78 -2.39 -0.02 1.42 16 31 H 0.07 2.46 7.25 -2.38 -0.02 2.44 16 32 H 0.06 2.54 6.71 -2.39 -0.02 2.53 16 33 H 0.01 0.60 8.07 -2.39 -0.02 0.58 16 34 H 0.00 0.21 7.86 -2.39 -0.02 0.19 16 35 H -0.04 -2.18 8.12 -2.39 -0.02 -2.20 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.11 4.36 6.61 -2.91 -0.02 4.34 16 38 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 39 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.16 2.46 6.37 -2.91 -0.02 2.44 16 Total: -1.00 -67.86 325.51 3.26 -64.60 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 1.02 Total: 11.76 kcal Atomic # 6 Polarization: -42.20 SS G_CDS: 4.12 Total: -38.09 kcal Atomic # 7 Polarization: -81.39 SS G_CDS: -3.90 Total: -85.29 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -67.86 3.26 -64.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138013638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.674 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds