Wall clock time and date at job start Mon Mar 30 2020 01:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99651 * 2 1 4 4 H 1.48499 * 109.47271 * 239.99814 * 3 2 1 5 5 H 1.48501 * 109.47207 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46915 * 120.00117 * 3 2 1 7 7 C 1.37880 * 120.00281 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99662 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99944 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47582 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47588 * 179.97438 * 11 10 9 13 13 C 1.34778 * 120.00272 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99835 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00107 * 179.97438 * 13 12 11 16 16 C 1.53000 * 109.47423 * 179.97438 * 15 13 12 17 17 C 1.52998 * 109.47681 * 184.99900 * 16 15 13 18 18 C 1.52997 * 109.47201 * 179.97438 * 17 16 15 19 19 C 1.52999 * 109.46862 * 60.00295 * 18 17 16 20 20 O 1.42903 * 109.47256 * 60.00148 * 19 18 17 21 21 C 1.53001 * 109.47329 * 299.99879 * 19 18 17 22 22 C 1.52997 * 109.47050 * 60.00237 * 21 19 18 23 23 H 0.96991 * 120.00211 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47418 * 59.99289 * 9 7 2 25 25 H 1.09001 * 109.46866 * 299.99560 * 9 7 2 26 26 H 1.09007 * 109.47374 * 59.99473 * 10 9 7 27 27 H 1.08996 * 109.47157 * 300.00052 * 10 9 7 28 28 H 1.09007 * 109.46837 * 59.99584 * 11 10 9 29 29 H 1.09001 * 109.47028 * 300.00007 * 11 10 9 30 30 H 0.97005 * 119.99796 * 359.97438 * 12 11 10 31 31 H 1.09007 * 109.47236 * 59.99905 * 15 13 12 32 32 H 1.09001 * 109.47242 * 299.99952 * 15 13 12 33 33 H 1.09006 * 109.47253 * 305.00717 * 16 15 13 34 34 H 1.09009 * 109.46785 * 60.00155 * 17 16 15 35 35 H 1.08997 * 109.47329 * 300.00500 * 17 16 15 36 36 H 1.08997 * 109.47549 * 300.00564 * 18 17 16 37 37 H 1.08997 * 109.46932 * 180.02562 * 18 17 16 38 38 H 1.09008 * 109.47201 * 179.97438 * 19 18 17 39 39 H 0.96700 * 114.00311 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47164 * 180.02562 * 21 19 18 41 41 H 1.08997 * 109.47124 * 299.99757 * 21 19 18 42 42 H 1.08997 * 109.46932 * 180.02562 * 22 21 19 43 43 H 1.08997 * 109.47549 * 59.99780 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4992 -0.0017 10 6 2.2454 -3.6620 -0.0027 11 6 1.4805 -4.9871 -0.0033 12 7 2.4325 -6.1005 -0.0049 13 6 1.9834 -7.3713 -0.0061 14 8 0.7910 -7.5929 -0.0064 15 6 2.9627 -8.5166 -0.0084 16 6 2.1978 -9.8417 -0.0088 17 6 3.1874 -11.0020 0.1146 18 6 2.4225 -12.3270 0.1148 19 6 1.6376 -12.4629 -1.1915 20 8 2.5434 -12.4360 -2.2964 21 6 0.6480 -11.3026 -1.3150 22 6 1.4130 -9.9776 -1.3152 23 1 -0.4850 0.8400 0.0004 24 1 0.6248 -2.5563 -0.8919 25 1 0.6242 -2.5575 0.8881 26 1 2.8722 -3.6050 0.8873 27 1 2.8720 -3.6034 -0.8926 28 1 0.8535 -5.0443 -0.8931 29 1 0.8542 -5.0454 0.8869 30 1 3.3862 -5.9232 -0.0058 31 1 3.5901 -8.4600 0.8812 32 1 3.5886 -8.4577 -0.8988 33 1 1.5065 -9.8625 0.8337 34 1 3.7463 -10.9053 1.0456 35 1 3.8787 -10.9812 -0.7279 36 1 1.7315 -12.3475 0.9576 37 1 3.1275 -13.1535 0.2032 38 1 1.0929 -13.4071 -1.1916 39 1 2.1141 -12.5173 -3.1591 40 1 0.0885 -11.3997 -2.2454 41 1 -0.0430 -11.3231 -0.4723 42 1 0.7079 -9.1510 -1.4027 43 1 2.1039 -9.9571 -2.1579 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144352116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:24:11 Heat of formation + Delta-G solvation = -134.321528 kcal Electronic energy + Delta-G solvation = -20381.911344 eV Core-core repulsion = 17232.071567 eV Total energy + Delta-G solvation = -3149.839777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.07409 -38.82719 -35.84608 -35.15127 -33.30413 -31.92966 -31.05805 -30.90740 -27.65222 -26.03438 -23.15358 -22.88818 -21.65390 -20.68811 -19.94728 -19.64885 -17.14688 -16.70566 -16.43135 -15.94016 -15.55425 -15.37664 -14.88737 -14.48015 -14.27339 -13.96211 -13.75669 -13.25843 -12.94391 -12.72241 -12.30262 -12.15948 -11.83867 -11.82046 -11.76455 -11.44349 -11.27971 -11.04345 -10.88311 -10.72631 -10.62505 -10.53418 -10.17906 -10.03484 -9.86041 -9.66720 -9.28598 -9.10923 -8.71884 -8.37377 -6.02086 -4.05352 2.84977 3.31738 3.36415 3.37992 3.46699 4.00630 4.43899 4.47649 4.51314 4.68431 4.84105 4.95009 4.97994 5.18050 5.28895 5.33498 5.35501 5.38807 5.50174 5.53294 5.64251 5.74300 5.78915 5.80253 5.86216 5.96411 6.03480 6.09825 6.17202 6.35378 6.40758 6.55485 6.60546 6.85531 7.01334 7.39853 7.62917 7.75863 7.76776 7.96611 8.37347 8.47000 9.01198 9.58791 11.09212 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.055287 B = 0.002538 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.324696 B =11030.867451 C =11196.140387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.729 5.729 13 C 0.506 3.494 14 O -0.543 6.543 15 C -0.138 4.138 16 C -0.069 4.069 17 C -0.111 4.111 18 C -0.111 4.111 19 C 0.104 3.896 20 O -0.564 6.564 21 C -0.150 4.150 22 C -0.116 4.116 23 H 0.262 0.738 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.398 0.602 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.049 0.951 39 H 0.375 0.625 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 -24.975 -1.606 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.380 5.380 13 C 0.292 3.708 14 O -0.421 6.421 15 C -0.178 4.178 16 C -0.088 4.088 17 C -0.149 4.149 18 C -0.148 4.148 19 C 0.045 3.955 20 O -0.370 6.370 21 C -0.187 4.187 22 C -0.153 4.153 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.037 0.963 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.231 0.769 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.221 0.779 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.101 0.899 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.532 -24.931 -1.116 25.562 hybrid contribution 0.435 1.074 -0.420 1.232 sum 5.967 -23.857 -1.536 24.640 Atomic orbital electron populations 1.69953 1.06070 1.26818 1.50484 1.25035 0.94861 0.99307 0.95263 0.86637 0.79558 0.83072 0.78595 1.20233 1.21262 1.20239 1.21172 0.92955 0.90972 1.51053 0.92703 1.19022 0.93854 0.90874 0.97613 1.21882 0.99741 0.93429 1.00816 1.21617 0.91942 0.85272 1.01836 1.46273 1.10717 1.06114 1.74857 1.20687 0.89854 0.84102 0.76114 1.90652 1.17068 1.84704 1.49681 1.21752 0.98348 0.93535 1.04169 1.20889 0.96575 0.91972 0.99354 1.21515 0.97914 0.93473 1.01974 1.21514 0.99494 0.98361 0.95455 1.21805 0.90062 0.96347 0.87287 1.86502 1.37000 1.96793 1.16687 1.22212 0.98184 0.96042 1.02308 1.21613 0.99491 0.97331 0.96852 0.92856 0.96317 0.96308 0.92779 0.92771 0.91918 0.91901 0.76885 0.89126 0.89061 0.90632 0.92164 0.91038 0.90752 0.91521 0.93257 0.77882 0.92019 0.91064 0.89865 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.37 5.27 -26.74 -0.14 -2.51 16 11 C 0.12 2.06 5.67 -4.04 -0.02 2.04 16 12 N -0.73 -10.34 5.56 -60.30 -0.33 -10.67 16 13 C 0.51 7.22 7.55 -10.99 -0.08 7.13 16 14 O -0.54 -9.73 13.96 5.56 0.08 -9.65 16 15 C -0.14 -1.39 5.18 -27.89 -0.14 -1.54 16 16 C -0.07 -0.71 1.84 -90.62 -0.17 -0.88 16 17 C -0.11 -0.96 5.06 -26.73 -0.14 -1.10 16 18 C -0.11 -0.89 5.66 -26.73 -0.15 -1.04 16 19 C 0.10 0.83 3.77 -26.73 -0.10 0.73 16 20 O -0.56 -4.79 11.97 -35.23 -0.42 -5.21 16 21 C -0.15 -1.34 5.64 -26.73 -0.15 -1.49 16 22 C -0.12 -1.26 4.80 -26.73 -0.13 -1.39 16 23 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 27 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.40 4.52 8.47 -40.82 -0.35 4.17 16 31 H 0.09 0.75 8.14 -51.92 -0.42 0.33 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.88 7.96 -51.93 -0.41 0.47 16 34 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 35 H 0.07 0.67 7.68 -51.93 -0.40 0.27 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 39 H 0.37 1.87 9.08 45.56 0.41 2.28 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.15 5.95 -51.93 -0.31 0.84 16 43 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -32.79 342.47 -8.49 -41.28 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.91 Total: 1.83 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -1.77 Total: -13.03 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.40 Total: -36.88 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.34 Total: -14.87 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.79 -8.49 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144352116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.043 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds