Wall clock time and date at job start Mon Mar 30 2020 00:59:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 C 1.52994 * 109.47337 * 120.00423 * 2 1 3 5 5 N 1.46500 * 109.47284 * 65.00000 * 4 2 1 6 6 C 1.39299 * 119.99642 * 180.02562 * 5 4 2 7 7 C 1.36220 * 120.30538 * 0.02562 * 6 5 4 8 8 C 1.41184 * 120.65210 * 180.02562 * 7 6 5 9 9 C 1.41183 * 119.51179 * 180.02562 * 8 7 6 10 10 H 1.08006 * 120.00153 * 25.60118 * 9 8 7 11 11 C 1.39905 * 120.00330 * 205.60063 * 9 8 7 12 12 N 1.30852 * 119.99736 * 18.21530 * 11 9 8 13 13 Si 1.86799 * 120.00380 * 198.21568 * 11 9 8 14 14 H 1.48503 * 109.47149 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47370 * 120.00107 * 13 11 9 16 16 H 1.48499 * 109.47291 * 240.00161 * 13 11 9 17 17 C 1.39978 * 120.97991 * 359.97438 * 8 7 6 18 18 C 1.39877 * 120.01989 * 359.97438 * 17 8 7 19 19 C 1.40850 * 121.16412 * 179.97438 * 18 17 8 20 20 C 1.36191 * 119.60715 * 180.02562 * 19 18 17 21 21 C 1.39253 * 120.95443 * 0.02898 * 20 19 18 22 22 C 1.36526 * 120.98983 * 0.23096 * 21 20 19 23 23 C 1.39887 * 119.72778 * 359.48805 * 22 21 20 24 24 H 1.08999 * 109.47171 * 60.00230 * 1 2 3 25 25 H 1.09004 * 109.46954 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46663 * 299.99463 * 1 2 3 27 27 H 1.09009 * 109.47061 * 240.00622 * 2 1 3 28 28 H 1.09000 * 109.47371 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47385 * 300.00090 * 3 2 1 30 30 H 1.08997 * 109.47046 * 60.00233 * 3 2 1 31 31 H 1.09000 * 109.47184 * 304.99717 * 4 2 1 32 32 H 1.09007 * 109.47154 * 184.99859 * 4 2 1 33 33 H 0.96995 * 119.99711 * 0.02562 * 5 4 2 34 34 H 1.08003 * 119.67817 * 359.97438 * 7 6 5 35 35 H 0.97001 * 119.99322 * 180.02562 * 12 11 9 36 36 H 1.07997 * 119.99253 * 180.02562 * 17 8 7 37 37 H 1.08003 * 120.19942 * 0.04966 * 19 18 17 38 38 H 1.08001 * 119.52762 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.50484 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.14110 * 179.74324 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 -2.1329 1.1904 6 6 2.0073 -2.9961 2.2246 7 6 2.7140 -2.5342 3.2936 8 6 3.0778 -3.4027 4.3455 9 6 3.8099 -2.8981 5.4423 10 1 3.7421 -1.8518 5.7014 11 6 4.6231 -3.7535 6.1935 12 7 4.9930 -4.9068 5.6983 13 14 5.1810 -3.2491 7.9034 14 1 4.6310 -1.9085 8.2282 15 1 4.6916 -4.2393 8.8959 16 1 6.6645 -3.1983 7.9452 17 6 2.7226 -4.7563 4.3178 18 6 1.9960 -5.2672 3.2372 19 6 1.6264 -6.6253 3.1843 20 6 0.9194 -7.0891 2.1166 21 6 0.5562 -6.2398 1.0745 22 6 0.9024 -4.9192 1.0908 23 6 1.6235 -4.4044 2.1733 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2618 2.1369 32 1 3.1265 -0.6444 1.2950 33 1 1.1490 -2.4664 0.4314 34 1 2.9995 -1.4934 3.3365 35 1 5.5566 -5.5000 6.2193 36 1 3.0090 -5.4064 5.1313 37 1 1.9017 -7.2949 3.9857 38 1 0.6370 -8.1308 2.0772 39 1 -0.0041 -6.6325 0.2390 40 1 0.6171 -4.2737 0.2732 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161653094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:23 Heat of formation + Delta-G solvation = 16.460011 kcal Electronic energy + Delta-G solvation = -19882.086348 eV Core-core repulsion = 17046.093869 eV Total energy + Delta-G solvation = -2835.992479 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.94422 -37.17859 -35.51018 -34.15101 -32.35318 -30.20121 -29.45994 -27.49168 -27.14249 -25.61939 -24.68192 -21.83904 -21.45329 -20.11572 -19.83958 -17.66569 -16.50040 -15.96207 -15.37031 -15.00962 -14.82176 -14.49087 -14.00934 -13.46528 -13.21454 -12.95051 -12.93494 -12.59078 -12.35735 -12.24757 -12.05537 -11.74441 -11.47279 -11.15014 -11.11458 -10.98807 -10.83338 -10.69120 -10.57054 -10.37584 -10.15931 -9.67160 -9.41560 -9.33980 -8.77601 -7.96566 -7.38045 -6.79680 -5.98363 -4.30813 1.96280 2.39784 2.99369 3.06885 3.11575 3.54649 3.89923 4.05543 4.15347 4.81371 4.87455 4.89424 5.05396 5.53895 5.57503 5.68685 5.70956 5.77689 5.78273 5.78882 5.86636 5.95139 6.00585 6.07773 6.21315 6.29876 6.33104 6.43728 6.72488 6.79651 6.86497 7.05622 7.13328 7.16223 7.41327 7.49672 7.61796 7.67038 7.95236 8.13590 8.20491 8.29863 8.48846 8.69641 8.89192 8.98618 10.14435 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.012937 B = 0.006540 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.821438 B = 4280.229608 C = 6275.547986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.144 4.144 4 C 0.136 3.864 5 N -0.753 5.753 6 C 0.217 3.783 7 C -0.246 4.246 8 C 0.143 3.857 9 C -0.449 4.449 10 H 0.078 0.922 11 C 0.075 3.925 12 N -0.775 5.775 13 Si 0.906 3.094 14 H -0.260 1.260 15 H -0.271 1.271 16 H -0.274 1.274 17 C -0.245 4.245 18 C 0.025 3.975 19 C -0.146 4.146 20 C -0.111 4.111 21 C -0.209 4.209 22 C -0.068 4.068 23 C -0.168 4.168 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.388 0.612 34 H 0.098 0.902 35 H 0.281 0.719 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.796 5.883 -7.081 10.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.201 4.201 4 C 0.011 3.989 5 N -0.385 5.385 6 C 0.116 3.884 7 C -0.271 4.271 8 C 0.140 3.860 9 C -0.478 4.478 10 H 0.096 0.904 11 C -0.144 4.144 12 N -0.399 5.399 13 Si 0.730 3.270 14 H -0.184 1.184 15 H -0.196 1.196 16 H -0.200 1.200 17 C -0.266 4.266 18 C 0.024 3.976 19 C -0.165 4.165 20 C -0.129 4.129 21 C -0.228 4.228 22 C -0.087 4.087 23 C -0.170 4.170 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.222 0.778 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.560 5.870 -6.979 10.196 hybrid contribution 0.218 -0.021 0.429 0.482 sum -4.342 5.848 -6.549 9.795 Atomic orbital electron populations 1.21838 0.94979 1.01972 1.01556 1.21325 0.96272 0.96584 0.98480 1.21755 1.01223 0.95312 1.01853 1.21230 0.99040 0.81725 0.96856 1.44353 1.63535 1.07203 1.23390 1.18334 0.93872 0.88057 0.88127 1.20354 1.10721 0.99628 0.96407 1.17212 0.87477 0.91470 0.89878 1.19661 1.21819 0.96378 1.09947 0.90378 1.25932 0.94755 0.94311 0.99415 1.69900 1.24989 1.08692 1.36307 0.86302 0.78682 0.80110 0.81913 1.18351 1.19588 1.19969 1.20968 1.08921 0.96755 0.99990 1.17763 0.94571 0.91800 0.93420 1.20861 1.01862 0.95116 0.98643 1.20452 0.99515 0.98088 0.94883 1.20168 1.08181 0.94279 1.00200 1.20403 0.97148 0.94949 0.96187 1.18252 1.09155 0.91404 0.98220 0.92946 0.92522 0.92488 0.90965 0.92408 0.92594 0.92398 0.92713 0.92729 0.77757 0.88435 0.90818 0.86475 0.87480 0.88398 0.88552 0.88751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.07 37.16 0.34 -1.20 16 2 C -0.11 -1.21 2.96 -90.62 -0.27 -1.47 16 3 C -0.14 -1.38 9.19 37.16 0.34 -1.03 16 4 C 0.14 2.00 4.29 -4.04 -0.02 1.98 16 5 N -0.75 -12.99 5.41 -57.36 -0.31 -13.30 16 6 C 0.22 4.76 6.78 -82.06 -0.56 4.20 16 7 C -0.25 -5.88 8.94 -39.19 -0.35 -6.23 16 8 C 0.14 3.79 5.55 -107.01 -0.59 3.20 16 9 C -0.45 -11.72 8.99 -37.84 -0.34 -12.06 16 10 H 0.08 1.94 7.91 -52.48 -0.42 1.53 16 11 C 0.08 1.87 5.09 -17.35 -0.09 1.78 16 12 N -0.78 -19.99 11.00 55.54 0.61 -19.38 16 13 Si 0.91 18.36 29.60 -169.99 -5.03 13.33 16 14 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 15 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 16 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 17 C -0.25 -6.54 8.39 -38.32 -0.32 -6.86 16 18 C 0.03 0.63 5.74 -106.87 -0.61 0.01 16 19 C -0.15 -3.25 9.78 -39.33 -0.38 -3.64 16 20 C -0.11 -2.20 9.95 -39.94 -0.40 -2.59 16 21 C -0.21 -4.02 9.96 -39.82 -0.40 -4.41 16 22 C -0.07 -1.37 9.54 -39.58 -0.38 -1.74 16 23 C -0.17 -3.86 5.90 -104.72 -0.62 -4.47 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.63 7.18 -51.93 -0.37 0.26 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.84 7.93 -51.93 -0.41 0.43 16 32 H 0.05 0.85 7.94 -51.92 -0.41 0.44 16 33 H 0.39 6.01 5.89 -40.82 -0.24 5.77 16 34 H 0.10 2.19 6.64 -52.48 -0.35 1.84 16 35 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 36 H 0.12 3.24 6.15 -52.49 -0.32 2.92 16 37 H 0.11 2.24 8.06 -52.48 -0.42 1.82 16 38 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 39 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.09 1.60 6.53 -52.48 -0.34 1.26 16 LS Contribution 324.95 15.07 4.90 4.90 Total: -1.00 -27.85 324.95 -10.28 -38.13 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -5.81 Total: 10.86 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: -4.65 Total: -34.54 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.30 Total: -32.68 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.85 -10.28 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161653094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.591 kcal (2) G-P(sol) polarization free energy of solvation -27.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds