Wall clock time and date at job start Mon Mar 30 2020 00:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47140 * 2 1 4 4 C 1.52994 * 109.47337 * 120.00423 * 2 1 3 5 5 N 1.46500 * 109.47284 * 65.00000 * 4 2 1 6 6 C 1.39299 * 119.99642 * 180.02562 * 5 4 2 7 7 C 1.36220 * 120.30538 * 0.02562 * 6 5 4 8 8 C 1.41184 * 120.65210 * 180.02562 * 7 6 5 9 9 C 1.41183 * 119.51179 * 180.02562 * 8 7 6 10 10 H 1.08006 * 120.00153 * 25.60118 * 9 8 7 11 11 C 1.39905 * 120.00330 * 205.60063 * 9 8 7 12 12 N 1.30852 * 119.99736 * 18.21530 * 11 9 8 13 13 Si 1.86799 * 120.00380 * 198.21568 * 11 9 8 14 14 H 1.48503 * 109.47149 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47370 * 120.00107 * 13 11 9 16 16 H 1.48499 * 109.47291 * 240.00161 * 13 11 9 17 17 C 1.39978 * 120.97991 * 359.97438 * 8 7 6 18 18 C 1.39877 * 120.01989 * 359.97438 * 17 8 7 19 19 C 1.40850 * 121.16412 * 179.97438 * 18 17 8 20 20 C 1.36191 * 119.60715 * 180.02562 * 19 18 17 21 21 C 1.39253 * 120.95443 * 0.02898 * 20 19 18 22 22 C 1.36526 * 120.98983 * 0.23096 * 21 20 19 23 23 C 1.39887 * 119.72778 * 359.48805 * 22 21 20 24 24 H 1.08999 * 109.47171 * 60.00230 * 1 2 3 25 25 H 1.09004 * 109.46954 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46663 * 299.99463 * 1 2 3 27 27 H 1.09009 * 109.47061 * 240.00622 * 2 1 3 28 28 H 1.09000 * 109.47371 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47385 * 300.00090 * 3 2 1 30 30 H 1.08997 * 109.47046 * 60.00233 * 3 2 1 31 31 H 1.09000 * 109.47184 * 304.99717 * 4 2 1 32 32 H 1.09007 * 109.47154 * 184.99859 * 4 2 1 33 33 H 0.96995 * 119.99711 * 0.02562 * 5 4 2 34 34 H 1.08003 * 119.67817 * 359.97438 * 7 6 5 35 35 H 0.97001 * 119.99322 * 180.02562 * 12 11 9 36 36 H 1.07997 * 119.99253 * 180.02562 * 17 8 7 37 37 H 1.08003 * 120.19942 * 0.04966 * 19 18 17 38 38 H 1.08001 * 119.52762 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.50484 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.14110 * 179.74324 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6525 -2.1329 1.1904 6 6 2.0073 -2.9961 2.2246 7 6 2.7140 -2.5342 3.2936 8 6 3.0778 -3.4027 4.3455 9 6 3.8099 -2.8981 5.4423 10 1 3.7421 -1.8518 5.7014 11 6 4.6231 -3.7535 6.1935 12 7 4.9930 -4.9068 5.6983 13 14 5.1810 -3.2491 7.9034 14 1 4.6310 -1.9085 8.2282 15 1 4.6916 -4.2393 8.8959 16 1 6.6645 -3.1983 7.9452 17 6 2.7226 -4.7563 4.3178 18 6 1.9960 -5.2672 3.2372 19 6 1.6264 -6.6253 3.1843 20 6 0.9194 -7.0891 2.1166 21 6 0.5562 -6.2398 1.0745 22 6 0.9024 -4.9192 1.0908 23 6 1.6235 -4.4044 2.1733 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8934 -0.5138 -0.8901 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6055 -0.2618 2.1369 32 1 3.1265 -0.6444 1.2950 33 1 1.1490 -2.4664 0.4314 34 1 2.9995 -1.4934 3.3365 35 1 5.5566 -5.5000 6.2193 36 1 3.0090 -5.4064 5.1313 37 1 1.9017 -7.2949 3.9857 38 1 0.6370 -8.1308 2.0772 39 1 -0.0041 -6.6325 0.2390 40 1 0.6171 -4.2737 0.2732 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161653094.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:22 Heat of formation + Delta-G solvation = 3.314416 kcal Electronic energy + Delta-G solvation = -19882.656383 eV Core-core repulsion = 17046.093869 eV Total energy + Delta-G solvation = -2836.562515 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.63463 -38.47411 -37.20157 -35.63019 -34.05362 -31.77970 -31.23179 -29.09293 -28.02917 -27.25296 -26.21287 -23.51565 -23.14006 -21.64581 -21.10112 -19.43611 -18.05743 -17.71991 -16.79858 -16.61360 -16.19301 -15.91391 -15.59170 -14.71971 -14.68019 -14.51655 -14.30830 -14.13402 -13.87484 -13.54010 -13.31004 -13.11879 -12.92395 -12.79210 -12.56901 -12.43055 -12.09891 -12.00572 -11.95030 -11.69101 -11.58212 -11.39895 -11.18552 -11.09678 -10.57145 -9.56139 -9.19506 -8.63686 -7.70540 -6.26333 0.25306 0.65300 1.35640 1.39426 1.52950 1.74302 2.19676 2.39212 2.62236 3.08620 3.83578 3.88907 3.98696 4.11399 4.14242 4.23058 4.37034 4.62053 4.66359 4.71269 4.78154 4.80552 4.84321 4.97846 4.99030 5.04792 5.08557 5.13845 5.20752 5.22568 5.30797 5.39195 5.42869 5.52500 5.69580 5.77539 5.89210 5.92036 6.12495 6.30585 6.47071 6.53452 6.77521 6.98064 7.04487 7.11419 8.33434 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.012937 B = 0.006540 C = 0.004461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.821438 B = 4280.229608 C = 6275.547986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.142 4.142 4 C 0.132 3.868 5 N -0.737 5.737 6 C 0.230 3.770 7 C -0.277 4.277 8 C 0.118 3.882 9 C -0.489 4.489 10 H 0.076 0.924 11 C 0.034 3.966 12 N -0.814 5.814 13 Si 0.981 3.019 14 H -0.256 1.256 15 H -0.266 1.266 16 H -0.264 1.264 17 C -0.282 4.282 18 C 0.004 3.996 19 C -0.175 4.175 20 C -0.098 4.098 21 C -0.198 4.198 22 C -0.071 4.071 23 C -0.188 4.188 24 H 0.073 0.927 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.400 0.600 34 H 0.101 0.899 35 H 0.287 0.713 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 6.104 -9.471 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.200 4.200 4 C 0.008 3.992 5 N -0.368 5.368 6 C 0.127 3.873 7 C -0.303 4.303 8 C 0.115 3.885 9 C -0.517 4.517 10 H 0.094 0.906 11 C -0.182 4.182 12 N -0.439 5.439 13 Si 0.802 3.198 14 H -0.179 1.179 15 H -0.190 1.190 16 H -0.189 1.189 17 C -0.303 4.303 18 C 0.003 3.997 19 C -0.194 4.194 20 C -0.116 4.116 21 C -0.216 4.216 22 C -0.089 4.089 23 C -0.191 4.191 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.098 0.902 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.237 0.763 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.123 0.877 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -6.141 6.111 -9.417 12.796 hybrid contribution 0.537 -0.188 0.919 1.081 sum -5.604 5.924 -8.499 11.778 Atomic orbital electron populations 1.21835 0.94147 1.01817 1.02402 1.21281 0.96846 0.97102 0.96480 1.21753 1.01174 0.94226 1.02813 1.21405 0.98533 0.80478 0.98753 1.44394 1.62474 1.07684 1.22237 1.18395 0.92106 0.88523 0.88310 1.20354 1.13033 0.99633 0.97251 1.17551 0.87943 0.92048 0.90933 1.19892 1.23526 0.96747 1.11585 0.90554 1.26803 0.94261 0.94008 1.03096 1.69976 1.25940 1.09955 1.37995 0.85179 0.78504 0.79720 0.76419 1.17931 1.19034 1.18857 1.20832 1.11743 0.96889 1.00868 1.18082 0.94566 0.93446 0.93572 1.20995 1.03778 0.94311 1.00314 1.20914 0.97038 1.00126 0.93477 1.20730 1.06522 0.93679 1.00679 1.20780 0.96035 0.96157 0.95916 1.18602 1.09852 0.91712 0.98893 0.90805 0.93145 0.93003 0.90186 0.92580 0.90606 0.92480 0.93530 0.93813 0.76327 0.88105 0.90257 0.89011 0.87668 0.84669 0.84199 0.85214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.07 71.98 0.65 -1.99 16 2 C -0.10 -1.97 2.96 -10.80 -0.03 -2.00 16 3 C -0.14 -2.40 9.19 71.98 0.66 -1.73 16 4 C 0.13 3.80 4.29 86.38 0.37 4.17 16 5 N -0.74 -24.54 5.41 -335.39 -1.81 -26.36 16 6 C 0.23 10.22 6.78 39.51 0.27 10.49 16 7 C -0.28 -13.95 8.94 22.52 0.20 -13.75 16 8 C 0.12 6.73 5.55 -21.41 -0.12 6.61 16 9 C -0.49 -27.26 8.99 23.40 0.21 -27.05 16 10 H 0.08 4.08 7.91 -2.91 -0.02 4.05 16 11 C 0.03 1.79 5.09 85.24 0.43 2.22 16 12 N -0.81 -44.65 11.00 21.82 0.24 -44.41 16 13 Si 0.98 39.29 29.60 68.60 2.03 41.32 16 14 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 15 H -0.27 -10.29 7.11 99.48 0.71 -9.59 16 16 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 17 C -0.28 -16.12 8.39 23.09 0.19 -15.93 16 18 C 0.00 0.21 5.74 -21.32 -0.12 0.09 16 19 C -0.18 -7.85 9.78 22.43 0.22 -7.63 16 20 C -0.10 -3.56 9.95 22.04 0.22 -3.35 16 21 C -0.20 -6.68 9.96 22.11 0.22 -6.46 16 22 C -0.07 -2.60 9.54 22.27 0.21 -2.38 16 23 C -0.19 -8.59 5.90 -19.93 -0.12 -8.71 16 24 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.05 0.98 7.18 -2.38 -0.02 0.96 16 26 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.05 1.43 7.93 -2.39 -0.02 1.41 16 32 H 0.04 1.37 7.94 -2.38 -0.02 1.35 16 33 H 0.40 11.30 5.89 -92.71 -0.55 10.75 16 34 H 0.10 4.81 6.64 -2.91 -0.02 4.79 16 35 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 36 H 0.09 5.55 6.15 -2.91 -0.02 5.53 16 37 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 38 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.13 3.79 6.53 -2.91 -0.02 3.77 16 Total: -1.00 -64.95 324.95 4.41 -60.53 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.48 Total: 36.34 kcal Atomic # 6 Polarization: -70.90 SS G_CDS: 3.47 Total: -67.42 kcal Atomic # 7 Polarization: -69.19 SS G_CDS: -1.57 Total: -70.77 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.32 kcal Total: -64.95 4.41 -60.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161653094.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.845 kcal (2) G-P(sol) polarization free energy of solvation -64.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds