Wall clock time and date at job start Mon Mar 30 2020 00:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47168 * 2 1 4 4 C 1.52994 * 109.47344 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47284 * 180.02562 * 4 3 2 6 6 C 1.39299 * 119.99642 * 180.02562 * 5 4 3 7 7 C 1.36220 * 120.30538 * 0.02562 * 6 5 4 8 8 C 1.41184 * 120.65210 * 180.02562 * 7 6 5 9 9 C 1.41183 * 119.51179 * 180.02562 * 8 7 6 10 10 H 1.08006 * 120.00153 * 25.60118 * 9 8 7 11 11 C 1.39905 * 120.00330 * 205.60063 * 9 8 7 12 12 N 1.30852 * 119.99736 * 18.21530 * 11 9 8 13 13 Si 1.86799 * 120.00380 * 198.21568 * 11 9 8 14 14 H 1.48503 * 109.47149 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47370 * 120.00107 * 13 11 9 16 16 H 1.48499 * 109.47291 * 240.00161 * 13 11 9 17 17 C 1.39978 * 120.97991 * 359.97438 * 8 7 6 18 18 C 1.39877 * 120.01989 * 359.97438 * 17 8 7 19 19 C 1.40850 * 121.16412 * 179.97438 * 18 17 8 20 20 C 1.36191 * 119.60715 * 180.02562 * 19 18 17 21 21 C 1.39253 * 120.95443 * 0.02898 * 20 19 18 22 22 C 1.36526 * 120.98983 * 0.23096 * 21 20 19 23 23 C 1.39887 * 119.72778 * 359.48805 * 22 21 20 24 24 H 1.09007 * 109.46839 * 299.99138 * 1 2 3 25 25 H 1.08998 * 109.47691 * 59.99306 * 1 2 3 26 26 H 1.08994 * 109.47325 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.46397 * 240.00967 * 2 1 3 28 28 H 1.08994 * 109.47226 * 120.00546 * 2 1 3 29 29 H 1.09007 * 109.46537 * 60.00676 * 3 2 1 30 30 H 1.08998 * 109.47381 * 300.00884 * 3 2 1 31 31 H 1.09000 * 109.47184 * 60.00255 * 4 3 2 32 32 H 1.09007 * 109.47154 * 300.00397 * 4 3 2 33 33 H 0.96995 * 119.99711 * 0.02562 * 5 4 3 34 34 H 1.08003 * 119.67817 * 359.97438 * 7 6 5 35 35 H 0.97001 * 119.99322 * 180.02562 * 12 11 9 36 36 H 1.07997 * 119.99253 * 180.02562 * 17 8 7 37 37 H 1.08003 * 120.19942 * 0.04966 * 19 18 17 38 38 H 1.08001 * 119.52762 * 179.97438 * 20 19 18 39 39 H 1.07995 * 119.50484 * 179.97438 * 21 20 19 40 40 H 1.08004 * 120.14110 * 179.74324 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 5.4279 3.0782 -0.0010 7 6 6.3185 2.0475 -0.0030 8 6 7.7081 2.2970 -0.0035 9 6 8.6098 1.2106 -0.0062 10 1 8.3053 0.2571 -0.4120 11 6 9.8977 1.3691 0.5168 12 7 10.1607 2.3717 1.3154 13 14 11.2418 0.1494 0.0751 14 1 10.6913 -0.8852 -0.8370 15 1 12.3555 0.8630 -0.5999 16 1 11.7471 -0.4998 1.3114 17 6 8.2052 3.6056 -0.0024 18 6 7.3216 4.6898 -0.0013 19 6 7.7954 6.0163 0.0003 20 6 6.9066 7.0482 0.0018 21 6 5.5343 6.8116 0.0023 22 6 5.0405 5.5388 0.0061 23 6 5.9220 4.4527 -0.0014 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8932 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6767 1.9562 0.8901 30 1 1.6766 1.9564 -0.8899 31 1 3.9330 0.9289 -0.8909 32 1 3.9337 0.9285 0.8891 33 1 3.4280 3.5610 0.0011 34 1 5.9582 1.0294 -0.0035 35 1 11.0538 2.4817 1.6777 36 1 9.2713 3.7781 -0.0032 37 1 8.8572 6.2139 0.0000 38 1 7.2714 8.0648 0.0035 39 1 4.8505 7.6475 0.0039 40 1 3.9735 5.3712 0.0106 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162207674.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:25 Heat of formation + Delta-G solvation = 0.348298 kcal Electronic energy + Delta-G solvation = -19577.799180 eV Core-core repulsion = 16741.108045 eV Total energy + Delta-G solvation = -2836.691135 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.61272 -38.16371 -37.11533 -35.64396 -34.21374 -32.14985 -31.26587 -29.90613 -28.34416 -26.90378 -24.57645 -23.42825 -23.00831 -21.92851 -21.55167 -19.41822 -18.04304 -17.71405 -16.76647 -16.65159 -16.47650 -15.91959 -15.56868 -14.86005 -14.68312 -14.67253 -14.29490 -14.11281 -13.96937 -13.63435 -13.29745 -13.02349 -12.78930 -12.72582 -12.56436 -12.42978 -12.05386 -11.96171 -11.91397 -11.81481 -11.48309 -11.39883 -11.19027 -11.09572 -10.57271 -9.56765 -9.19706 -8.63697 -7.71527 -6.26447 0.25053 0.65160 1.35757 1.39542 1.53081 1.73910 2.19731 2.39070 2.59979 3.08562 3.88789 3.91887 4.03739 4.11513 4.20002 4.22071 4.37020 4.47685 4.63654 4.66510 4.70160 4.79746 4.92927 4.96977 4.98579 5.03807 5.07340 5.16812 5.21794 5.25453 5.30697 5.37033 5.45767 5.51328 5.69384 5.77344 5.89102 5.91877 6.12378 6.30330 6.46505 6.53170 6.77265 6.97855 7.04431 7.11090 8.33405 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.006029 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.827581 B = 4643.417240 C = 6855.830754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.117 4.117 4 C 0.128 3.872 5 N -0.740 5.740 6 C 0.229 3.771 7 C -0.277 4.277 8 C 0.119 3.881 9 C -0.489 4.489 10 H 0.077 0.923 11 C 0.035 3.965 12 N -0.813 5.813 13 Si 0.981 3.019 14 H -0.256 1.256 15 H -0.266 1.266 16 H -0.264 1.264 17 C -0.282 4.282 18 C 0.004 3.996 19 C -0.176 4.176 20 C -0.098 4.098 21 C -0.198 4.198 22 C -0.071 4.071 23 C -0.188 4.188 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.401 0.599 34 H 0.102 0.898 35 H 0.287 0.713 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.045 -0.080 -1.922 13.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.155 4.155 4 C 0.004 3.996 5 N -0.371 5.371 6 C 0.125 3.875 7 C -0.303 4.303 8 C 0.116 3.884 9 C -0.518 4.518 10 H 0.095 0.905 11 C -0.181 4.181 12 N -0.438 5.438 13 Si 0.802 3.198 14 H -0.179 1.179 15 H -0.190 1.190 16 H -0.189 1.189 17 C -0.304 4.304 18 C 0.004 3.996 19 C -0.195 4.195 20 C -0.116 4.116 21 C -0.216 4.216 22 C -0.089 4.089 23 C -0.191 4.191 24 H 0.076 0.924 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.237 0.763 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.153 0.847 39 H 0.158 0.842 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.934 -0.188 -1.764 13.055 hybrid contribution 0.992 -0.358 0.067 1.057 sum -11.942 -0.547 -1.697 12.075 Atomic orbital electron populations 1.21739 0.94435 1.02229 1.02162 1.21442 0.96908 0.95273 1.02376 1.21718 0.91967 0.98681 1.03161 1.21345 0.95348 0.82714 1.00230 1.44400 1.02230 1.07692 1.82773 1.18408 0.84296 0.92009 0.92762 1.20368 0.92915 0.96677 1.20316 1.17545 0.91454 0.93412 0.86032 1.19900 0.97716 0.98170 1.36003 0.90522 1.26800 1.01511 0.97885 0.91947 1.69976 1.23029 1.29342 1.21472 0.85180 0.77042 0.78313 0.79297 1.17914 1.19038 1.18859 1.20841 0.97453 0.91631 1.20438 1.18079 0.92536 0.93985 0.95031 1.21000 0.99165 0.92262 1.07023 1.20919 0.93664 0.98591 0.98381 1.20735 0.95274 0.96729 1.08884 1.20795 0.98460 0.92197 0.97449 1.18607 0.93062 0.91560 1.15872 0.92421 0.92323 0.92005 0.91807 0.91970 0.90871 0.90679 0.93448 0.93808 0.76272 0.88045 0.90251 0.88984 0.87645 0.84658 0.84173 0.85084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.36 16 2 C -0.12 -2.12 5.93 30.60 0.18 -1.94 16 3 C -0.12 -2.33 5.33 30.59 0.16 -2.17 16 4 C 0.13 3.63 4.90 86.38 0.42 4.06 16 5 N -0.74 -24.68 5.68 -335.39 -1.90 -26.59 16 6 C 0.23 10.17 6.78 39.51 0.27 10.44 16 7 C -0.28 -13.96 8.94 22.52 0.20 -13.76 16 8 C 0.12 6.74 5.55 -21.41 -0.12 6.62 16 9 C -0.49 -27.26 8.99 23.40 0.21 -27.05 16 10 H 0.08 4.09 7.91 -2.91 -0.02 4.06 16 11 C 0.03 1.80 5.09 85.24 0.43 2.24 16 12 N -0.81 -44.56 11.00 21.82 0.24 -44.32 16 13 Si 0.98 39.23 29.60 68.60 2.03 41.26 16 14 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 15 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 16 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 17 C -0.28 -16.14 8.39 23.09 0.19 -15.94 16 18 C 0.00 0.23 5.74 -21.32 -0.12 0.10 16 19 C -0.18 -7.87 9.78 22.43 0.22 -7.65 16 20 C -0.10 -3.56 9.95 22.04 0.22 -3.34 16 21 C -0.20 -6.68 9.96 22.11 0.22 -6.46 16 22 C -0.07 -2.60 9.54 22.27 0.21 -2.39 16 23 C -0.19 -8.62 5.90 -19.93 -0.12 -8.73 16 24 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.05 1.43 7.93 -2.39 -0.02 1.41 16 32 H 0.04 1.36 7.94 -2.38 -0.02 1.34 16 33 H 0.40 11.20 6.71 -92.71 -0.62 10.58 16 34 H 0.10 4.83 6.64 -2.91 -0.02 4.81 16 35 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 36 H 0.09 5.56 6.15 -2.91 -0.02 5.54 16 37 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 38 H 0.14 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.13 3.80 6.53 -2.91 -0.02 3.78 16 Total: -1.00 -65.04 327.57 4.07 -60.97 By element: Atomic # 1 Polarization: 35.62 SS G_CDS: 0.41 Total: 36.03 kcal Atomic # 6 Polarization: -70.65 SS G_CDS: 3.30 Total: -67.35 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.66 Total: -70.90 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 2.03 Total: 41.26 kcal Total: -65.04 4.07 -60.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162207674.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.314 kcal (2) G-P(sol) polarization free energy of solvation -65.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds