Wall clock time and date at job start Mon Mar 30 2020 01:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 H 1.08996 * 109.47407 * 55.00667 * 3 2 1 5 5 C 1.53000 * 109.47071 * 175.00500 * 3 2 1 6 6 N 1.46498 * 109.47557 * 295.00116 * 3 2 1 7 7 C 1.39302 * 120.00156 * 154.99693 * 6 3 2 8 8 C 1.36222 * 120.29848 * 0.02562 * 7 6 3 9 9 C 1.41189 * 120.64872 * 180.02562 * 8 7 6 10 10 C 1.41184 * 119.50804 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00471 * 25.59838 * 10 9 8 12 12 C 1.39912 * 119.99451 * 205.59521 * 10 9 8 13 13 N 1.30846 * 120.00203 * 18.21994 * 12 10 9 14 14 Si 1.86798 * 119.99960 * 198.21140 * 12 10 9 15 15 H 1.48500 * 109.46918 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46906 * 120.00143 * 14 12 10 17 17 H 1.48501 * 109.47562 * 240.00750 * 14 12 10 18 18 C 1.39978 * 120.97648 * 359.97438 * 9 8 7 19 19 C 1.39868 * 120.02466 * 0.02562 * 18 9 8 20 20 C 1.40859 * 121.16712 * 179.97438 * 19 18 9 21 21 C 1.36189 * 119.60997 * 179.97438 * 20 19 18 22 22 C 1.39254 * 120.95058 * 0.02562 * 21 20 19 23 23 C 1.36528 * 120.99395 * 359.97438 * 22 21 20 24 24 C 1.39886 * 119.72740 * 359.73553 * 23 22 21 25 25 H 1.09004 * 109.46608 * 299.99450 * 1 2 3 26 26 H 1.09001 * 109.47474 * 59.99181 * 1 2 3 27 27 H 1.08998 * 109.47438 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46608 * 240.00550 * 2 1 3 29 29 H 1.08990 * 109.47786 * 120.00458 * 2 1 3 30 30 H 1.09002 * 109.47188 * 180.02562 * 5 3 2 31 31 H 1.09006 * 109.46946 * 299.99725 * 5 3 2 32 32 H 1.08998 * 109.47264 * 60.00197 * 5 3 2 33 33 H 0.97006 * 120.00144 * 335.00944 * 6 3 2 34 34 H 1.07994 * 119.67779 * 0.02562 * 8 7 6 35 35 H 0.96994 * 119.99900 * 179.97438 * 13 12 10 36 36 H 1.08003 * 119.99064 * 180.02562 * 18 9 8 37 37 H 1.07997 * 120.19066 * 0.02562 * 20 19 18 38 38 H 1.07998 * 119.52556 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.50154 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.13273 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5648 1.4443 0.1256 6 7 1.6524 2.0976 -1.2517 7 6 1.5213 3.4835 -1.3010 8 6 1.7525 4.2357 -0.1891 9 6 1.6213 5.6408 -0.2306 10 6 1.8672 6.3970 0.9361 11 1 2.5237 6.0106 1.7017 12 6 1.2605 7.6469 1.1003 13 7 0.2145 7.9660 0.3818 14 14 1.9434 8.8603 2.3456 15 1 3.1214 8.2628 3.0242 16 1 2.3531 10.1063 1.6492 17 1 0.8991 9.1766 3.3529 18 6 1.2520 6.2954 -1.4115 19 6 1.0063 5.5568 -2.5736 20 6 0.6329 6.1906 -3.7748 21 6 0.4018 5.4405 -4.8878 22 6 0.5288 4.0541 -4.8562 23 6 0.8890 3.4071 -3.7091 24 6 1.1407 4.1438 -2.5469 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 3.9281 2.4720 0.1261 31 1 3.8532 0.9569 1.0570 32 1 3.9994 0.9053 -0.7163 33 1 1.4869 1.5662 -2.0463 34 1 2.0390 3.7525 0.7333 35 1 -0.2063 8.8324 0.4959 36 1 1.1567 7.3711 -1.4254 37 1 0.5312 7.2651 -3.8132 38 1 0.1151 5.9278 -5.8080 39 1 0.3396 3.4821 -5.7525 40 1 0.9830 2.3313 -3.7002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168003124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:00 Heat of formation + Delta-G solvation = 19.263390 kcal Electronic energy + Delta-G solvation = -20189.995202 eV Core-core repulsion = 17354.124287 eV Total energy + Delta-G solvation = -2835.870915 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.00988 -37.21012 -35.40253 -33.54657 -32.06291 -30.28089 -29.57968 -28.88679 -27.03779 -25.11653 -23.52195 -22.09223 -21.52094 -20.59531 -19.63948 -17.73035 -16.41468 -15.96504 -15.54747 -14.98833 -14.45105 -14.18392 -13.87533 -13.52110 -13.29415 -12.94738 -12.80182 -12.56426 -12.36796 -12.06983 -11.84097 -11.54432 -11.46063 -11.26057 -11.14365 -10.97757 -10.77020 -10.64479 -10.45647 -10.38570 -10.15440 -9.66779 -9.41153 -9.31602 -8.78229 -7.97074 -7.37376 -6.79626 -5.96830 -4.30781 1.96657 2.40099 2.99164 3.06736 3.11335 3.55092 3.89800 4.04988 4.15470 4.88674 4.89074 5.17300 5.21747 5.58737 5.70454 5.72005 5.75606 5.81557 5.84556 5.91192 5.92941 6.00263 6.06512 6.22061 6.32996 6.36697 6.44006 6.51534 6.72829 6.83354 6.87541 7.05780 7.13798 7.17935 7.41801 7.50116 7.62154 7.67611 7.95572 8.14555 8.22029 8.30408 8.50404 8.70292 8.89395 8.99079 10.14441 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.007184 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.746214 B = 3896.488187 C = 5579.117136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.151 3.849 4 H 0.080 0.920 5 C -0.168 4.168 6 N -0.746 5.746 7 C 0.220 3.780 8 C -0.247 4.247 9 C 0.143 3.857 10 C -0.450 4.450 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.775 5.775 14 Si 0.905 3.095 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.274 1.274 18 C -0.246 4.246 19 C 0.025 3.975 20 C -0.147 4.147 21 C -0.111 4.111 22 C -0.210 4.210 23 C -0.068 4.068 24 C -0.168 4.168 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.387 0.613 34 H 0.099 0.901 35 H 0.281 0.719 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -9.159 -1.030 9.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.045 3.955 4 H 0.097 0.903 5 C -0.226 4.226 6 N -0.377 5.377 7 C 0.120 3.880 8 C -0.273 4.273 9 C 0.140 3.860 10 C -0.478 4.478 11 H 0.096 0.904 12 C -0.144 4.144 13 N -0.399 5.399 14 Si 0.729 3.271 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.200 1.200 18 C -0.267 4.267 19 C 0.024 3.976 20 C -0.165 4.165 21 C -0.129 4.129 22 C -0.229 4.229 23 C -0.086 4.086 24 C -0.171 4.171 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.221 0.779 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.628 -9.019 -0.861 9.206 hybrid contribution 0.095 0.409 0.235 0.481 sum 1.723 -8.610 -0.626 8.803 Atomic orbital electron populations 1.21747 0.95474 1.00904 1.02699 1.21793 0.96488 0.96255 1.02102 1.20802 0.93916 0.92286 0.88479 0.90253 1.22280 0.96725 1.02775 1.00852 1.44428 1.78150 1.03797 1.11328 1.18324 0.94455 0.82113 0.93140 1.20374 1.16727 0.94177 0.95982 1.17215 0.86465 0.89704 0.92617 1.19658 1.24114 1.00606 1.03471 0.90396 1.25928 0.93356 0.98653 0.96456 1.69893 1.14117 1.21304 1.34577 0.86316 0.80079 0.80285 0.80412 1.18348 1.19598 1.19972 1.20966 1.15969 0.98962 0.90770 1.17763 0.94755 0.91269 0.93771 1.20862 1.04064 0.98587 0.93023 1.20448 1.01148 0.93994 0.97339 1.20169 1.10810 0.94419 0.97482 1.20405 0.98037 0.97236 0.92949 1.18256 1.13715 0.93096 0.91989 0.92595 0.92255 0.93240 0.92033 0.91131 0.91677 0.92631 0.93023 0.77884 0.88293 0.90829 0.86528 0.87517 0.88432 0.88588 0.88726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.80 37.16 0.36 -1.41 16 2 C -0.13 -1.45 5.47 -26.73 -0.15 -1.60 16 3 C 0.15 2.17 2.26 -67.93 -0.15 2.02 16 4 H 0.08 1.28 6.48 -51.93 -0.34 0.94 16 5 C -0.17 -2.27 9.41 37.16 0.35 -1.92 16 6 N -0.75 -12.53 4.65 -50.91 -0.24 -12.77 16 7 C 0.22 4.73 6.77 -82.06 -0.56 4.17 16 8 C -0.25 -5.80 8.48 -39.19 -0.33 -6.14 16 9 C 0.14 3.76 5.55 -107.01 -0.59 3.17 16 10 C -0.45 -11.65 8.99 -37.84 -0.34 -11.99 16 11 H 0.08 1.93 7.91 -52.49 -0.42 1.51 16 12 C 0.08 1.87 5.09 -17.34 -0.09 1.78 16 13 N -0.78 -19.93 11.00 55.55 0.61 -19.32 16 14 Si 0.90 18.33 29.60 -169.99 -5.03 13.30 16 15 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 16 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 C -0.25 -6.51 8.39 -38.32 -0.32 -6.83 16 19 C 0.03 0.62 5.74 -106.87 -0.61 0.01 16 20 C -0.15 -3.26 9.78 -39.33 -0.38 -3.64 16 21 C -0.11 -2.19 9.95 -39.94 -0.40 -2.59 16 22 C -0.21 -4.01 9.96 -39.82 -0.40 -4.41 16 23 C -0.07 -1.34 9.54 -39.58 -0.38 -1.72 16 24 C -0.17 -3.82 5.90 -104.72 -0.62 -4.43 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 0.77 7.75 -51.93 -0.40 0.37 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 1.03 7.68 -51.93 -0.40 0.64 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.39 5.91 6.84 -40.82 -0.28 5.63 16 34 H 0.10 2.18 5.99 -52.49 -0.31 1.86 16 35 H 0.28 6.54 8.30 -40.82 -0.34 6.21 16 36 H 0.12 3.22 6.15 -52.48 -0.32 2.90 16 37 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.09 1.59 6.53 -52.49 -0.34 1.25 16 LS Contribution 324.30 15.07 4.89 4.89 Total: -1.00 -27.44 324.30 -10.13 -37.56 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.75 Total: 11.87 kcal Atomic # 6 Polarization: -30.92 SS G_CDS: -4.61 Total: -35.53 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.37 Total: -32.09 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.44 -10.13 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168003124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.826 kcal (2) G-P(sol) polarization free energy of solvation -27.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds