Wall clock time and date at job start Mon Mar 30 2020 01:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47121 * 2 1 4 4 H 1.08996 * 109.47407 * 55.00667 * 3 2 1 5 5 C 1.53000 * 109.47071 * 175.00500 * 3 2 1 6 6 N 1.46498 * 109.47557 * 295.00116 * 3 2 1 7 7 C 1.39302 * 120.00156 * 154.99693 * 6 3 2 8 8 C 1.36222 * 120.29848 * 0.02562 * 7 6 3 9 9 C 1.41189 * 120.64872 * 180.02562 * 8 7 6 10 10 C 1.41184 * 119.50804 * 180.02562 * 9 8 7 11 11 H 1.07995 * 120.00471 * 25.59838 * 10 9 8 12 12 C 1.39912 * 119.99451 * 205.59521 * 10 9 8 13 13 N 1.30846 * 120.00203 * 18.21994 * 12 10 9 14 14 Si 1.86798 * 119.99960 * 198.21140 * 12 10 9 15 15 H 1.48500 * 109.46918 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.46906 * 120.00143 * 14 12 10 17 17 H 1.48501 * 109.47562 * 240.00750 * 14 12 10 18 18 C 1.39978 * 120.97648 * 359.97438 * 9 8 7 19 19 C 1.39868 * 120.02466 * 0.02562 * 18 9 8 20 20 C 1.40859 * 121.16712 * 179.97438 * 19 18 9 21 21 C 1.36189 * 119.60997 * 179.97438 * 20 19 18 22 22 C 1.39254 * 120.95058 * 0.02562 * 21 20 19 23 23 C 1.36528 * 120.99395 * 359.97438 * 22 21 20 24 24 C 1.39886 * 119.72740 * 359.73553 * 23 22 21 25 25 H 1.09004 * 109.46608 * 299.99450 * 1 2 3 26 26 H 1.09001 * 109.47474 * 59.99181 * 1 2 3 27 27 H 1.08998 * 109.47438 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46608 * 240.00550 * 2 1 3 29 29 H 1.08990 * 109.47786 * 120.00458 * 2 1 3 30 30 H 1.09002 * 109.47188 * 180.02562 * 5 3 2 31 31 H 1.09006 * 109.46946 * 299.99725 * 5 3 2 32 32 H 1.08998 * 109.47264 * 60.00197 * 5 3 2 33 33 H 0.97006 * 120.00144 * 335.00944 * 6 3 2 34 34 H 1.07994 * 119.67779 * 0.02562 * 8 7 6 35 35 H 0.96994 * 119.99900 * 179.97438 * 13 12 10 36 36 H 1.08003 * 119.99064 * 180.02562 * 18 9 8 37 37 H 1.07997 * 120.19066 * 0.02562 * 20 19 18 38 38 H 1.07998 * 119.52556 * 179.97438 * 21 20 19 39 39 H 1.08002 * 119.50154 * 179.97438 * 22 21 20 40 40 H 1.07996 * 120.13273 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5648 1.4443 0.1256 6 7 1.6524 2.0976 -1.2517 7 6 1.5213 3.4835 -1.3010 8 6 1.7525 4.2357 -0.1891 9 6 1.6213 5.6408 -0.2306 10 6 1.8672 6.3970 0.9361 11 1 2.5237 6.0106 1.7017 12 6 1.2605 7.6469 1.1003 13 7 0.2145 7.9660 0.3818 14 14 1.9434 8.8603 2.3456 15 1 3.1214 8.2628 3.0242 16 1 2.3531 10.1063 1.6492 17 1 0.8991 9.1766 3.3529 18 6 1.2520 6.2954 -1.4115 19 6 1.0063 5.5568 -2.5736 20 6 0.6329 6.1906 -3.7748 21 6 0.4018 5.4405 -4.8878 22 6 0.5288 4.0541 -4.8562 23 6 0.8890 3.4071 -3.7091 24 6 1.1407 4.1438 -2.5469 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8898 30 1 3.9281 2.4720 0.1261 31 1 3.8532 0.9569 1.0570 32 1 3.9994 0.9053 -0.7163 33 1 1.4869 1.5662 -2.0463 34 1 2.0390 3.7525 0.7333 35 1 -0.2063 8.8324 0.4959 36 1 1.1567 7.3711 -1.4254 37 1 0.5312 7.2651 -3.8132 38 1 0.1151 5.9278 -5.8080 39 1 0.3396 3.4821 -5.7525 40 1 0.9830 2.3313 -3.7002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168003124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:59 Heat of formation + Delta-G solvation = 6.450468 kcal Electronic energy + Delta-G solvation = -20190.550812 eV Core-core repulsion = 17354.124287 eV Total energy + Delta-G solvation = -2836.426525 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.66984 -38.58717 -37.13111 -35.12676 -33.68012 -31.62771 -31.29228 -30.25157 -28.74487 -26.92262 -24.61665 -23.67048 -23.22449 -22.07555 -21.14515 -19.47353 -18.00714 -17.70413 -16.93265 -16.70849 -15.93819 -15.79381 -15.05764 -14.91683 -14.65606 -14.41981 -14.24086 -14.11942 -14.07221 -13.53090 -13.27997 -13.09720 -12.80905 -12.69397 -12.50363 -12.43023 -12.34437 -12.03541 -11.90003 -11.70407 -11.55356 -11.38065 -11.16370 -11.04829 -10.56659 -9.54732 -9.17590 -8.63045 -7.65881 -6.25535 0.26987 0.66665 1.35197 1.39075 1.52358 1.76554 2.19543 2.40410 2.64798 3.09518 3.84560 3.90843 4.12203 4.17883 4.19448 4.28231 4.37509 4.52831 4.68214 4.69855 4.79912 4.80219 4.88806 4.99848 5.03342 5.08365 5.11360 5.15829 5.22782 5.27377 5.33371 5.38006 5.45715 5.55549 5.70994 5.79252 5.90379 5.93826 6.13656 6.32621 6.50262 6.56029 6.79934 6.99948 7.09399 7.13885 8.33927 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013144 B = 0.007184 C = 0.005018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.746214 B = 3896.488187 C = 5579.117136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.162 4.162 6 N -0.730 5.730 7 C 0.237 3.763 8 C -0.276 4.276 9 C 0.119 3.881 10 C -0.489 4.489 11 H 0.076 0.924 12 C 0.034 3.966 13 N -0.814 5.814 14 Si 0.980 3.020 15 H -0.256 1.256 16 H -0.266 1.266 17 H -0.264 1.264 18 C -0.284 4.284 19 C 0.004 3.996 20 C -0.177 4.177 21 C -0.098 4.098 22 C -0.199 4.199 23 C -0.069 4.069 24 C -0.188 4.188 25 H 0.041 0.959 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.399 0.601 34 H 0.103 0.897 35 H 0.286 0.714 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.944 -11.885 -2.482 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.040 3.960 4 H 0.075 0.925 5 C -0.220 4.220 6 N -0.360 5.360 7 C 0.133 3.867 8 C -0.302 4.302 9 C 0.116 3.884 10 C -0.518 4.518 11 H 0.094 0.906 12 C -0.182 4.182 13 N -0.439 5.439 14 Si 0.800 3.200 15 H -0.179 1.179 16 H -0.191 1.191 17 H -0.189 1.189 18 C -0.305 4.305 19 C 0.003 3.997 20 C -0.196 4.196 21 C -0.116 4.116 22 C -0.218 4.218 23 C -0.087 4.087 24 C -0.191 4.191 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.235 0.765 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.810 -11.802 -2.326 12.164 hybrid contribution -0.015 1.057 0.442 1.146 sum 1.796 -10.745 -1.884 11.055 Atomic orbital electron populations 1.21750 0.95867 1.01951 1.01286 1.21748 0.95987 0.93774 1.04056 1.21017 0.94606 0.93916 0.86484 0.92507 1.22211 0.95758 1.01281 1.02770 1.44484 1.76748 1.01946 1.12853 1.18348 0.92143 0.84068 0.92131 1.20351 1.19154 0.93464 0.97198 1.17558 0.86807 0.91239 0.92790 1.19886 1.25611 1.02318 1.03965 0.90587 1.26792 0.93082 0.99918 0.98370 1.69973 1.15405 1.22048 1.36490 0.85206 0.79459 0.77501 0.77828 1.17899 1.19097 1.18865 1.20821 1.19413 0.97957 0.92292 1.18081 0.94956 0.92636 0.94022 1.20990 1.06048 0.99030 0.93493 1.20900 0.98527 0.94612 0.97542 1.20721 1.08092 0.94335 0.98636 1.20782 0.97036 0.99000 0.91916 1.18611 1.14026 0.92734 0.93687 0.93933 0.93790 0.90956 0.90216 0.88935 0.94810 0.90224 0.91663 0.76521 0.87943 0.90316 0.89187 0.87816 0.84799 0.84301 0.85142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.80 71.98 0.71 -2.48 16 2 C -0.12 -2.29 5.47 30.59 0.17 -2.12 16 3 C 0.14 3.96 2.26 44.99 0.10 4.06 16 4 H 0.06 1.84 6.48 -2.39 -0.02 1.83 16 5 C -0.16 -4.13 9.41 71.98 0.68 -3.45 16 6 N -0.73 -23.50 4.65 -315.00 -1.46 -24.96 16 7 C 0.24 10.29 6.77 39.51 0.27 10.56 16 8 C -0.28 -13.69 8.48 22.52 0.19 -13.50 16 9 C 0.12 6.74 5.55 -21.41 -0.12 6.62 16 10 C -0.49 -27.22 8.99 23.40 0.21 -27.01 16 11 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 12 C 0.03 1.79 5.09 85.25 0.43 2.23 16 13 N -0.81 -44.77 11.00 21.82 0.24 -44.53 16 14 Si 0.98 39.39 29.60 68.60 2.03 41.42 16 15 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 16 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 17 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 18 C -0.28 -16.20 8.39 23.09 0.19 -16.00 16 19 C 0.00 0.19 5.74 -21.32 -0.12 0.07 16 20 C -0.18 -7.96 9.78 22.43 0.22 -7.74 16 21 C -0.10 -3.60 9.95 22.04 0.22 -3.38 16 22 C -0.20 -6.76 9.96 22.11 0.22 -6.54 16 23 C -0.07 -2.53 9.54 22.27 0.21 -2.31 16 24 C -0.19 -8.52 5.90 -19.93 -0.12 -8.64 16 25 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 26 H 0.04 1.05 7.75 -2.39 -0.02 1.03 16 27 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 1.07 7.68 -2.39 -0.02 1.05 16 31 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.40 10.94 6.84 -92.70 -0.63 10.30 16 34 H 0.10 4.82 5.99 -2.91 -0.02 4.80 16 35 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 36 H 0.09 5.46 6.15 -2.91 -0.02 5.44 16 37 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 39 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.13 3.77 6.53 -2.91 -0.02 3.75 16 Total: -1.00 -64.98 324.30 4.67 -60.31 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: 0.40 Total: 37.39 kcal Atomic # 6 Polarization: -73.09 SS G_CDS: 3.46 Total: -69.63 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: -1.22 Total: -69.49 kcal Atomic # 14 Polarization: 39.39 SS G_CDS: 2.03 Total: 41.42 kcal Total: -64.98 4.67 -60.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168003124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.763 kcal (2) G-P(sol) polarization free energy of solvation -64.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds