Wall clock time and date at job start Mon Mar 30 2020 01:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47384 * 2 1 4 4 H 1.09000 * 109.47410 * 305.00139 * 3 2 1 5 5 C 1.52998 * 109.47702 * 185.00066 * 3 2 1 6 6 N 1.46499 * 109.47159 * 64.99794 * 3 2 1 7 7 C 1.39297 * 120.00253 * 205.00005 * 6 3 2 8 8 C 1.36222 * 120.30265 * 0.02562 * 7 6 3 9 9 C 1.41187 * 120.65426 * 179.97438 * 8 7 6 10 10 C 1.41181 * 119.51131 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00257 * 333.32747 * 10 9 8 12 12 C 1.39914 * 119.99900 * 153.33369 * 10 9 8 13 13 N 1.30840 * 120.00013 * 342.85744 * 12 10 9 14 14 Si 1.86797 * 119.99760 * 162.86019 * 12 10 9 15 15 H 1.48497 * 109.47292 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46910 * 119.99995 * 14 12 10 17 17 H 1.48500 * 109.47306 * 239.99572 * 14 12 10 18 18 C 1.39981 * 120.97502 * 359.97438 * 9 8 7 19 19 C 1.39869 * 120.02325 * 0.02585 * 18 9 8 20 20 C 1.40853 * 121.16369 * 180.02562 * 19 18 9 21 21 C 1.36208 * 119.60199 * 179.23330 * 20 19 18 22 22 C 1.39247 * 120.95087 * 0.72440 * 21 20 19 23 23 C 1.36528 * 120.99238 * 359.50517 * 22 21 20 24 24 C 1.39874 * 119.73030 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.46911 * 299.99877 * 1 2 3 26 26 H 1.09004 * 109.47080 * 59.99913 * 1 2 3 27 27 H 1.09004 * 109.47117 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47078 * 239.99600 * 2 1 3 29 29 H 1.09000 * 109.47408 * 120.00457 * 2 1 3 30 30 H 1.09003 * 109.47289 * 59.99597 * 5 3 2 31 31 H 1.09003 * 109.47138 * 300.00143 * 5 3 2 32 32 H 1.08998 * 109.47741 * 180.02562 * 5 3 2 33 33 H 0.97001 * 120.00006 * 25.00228 * 6 3 2 34 34 H 1.08004 * 119.67316 * 359.94865 * 8 7 6 35 35 H 0.96993 * 119.99874 * 179.97438 * 13 12 10 36 36 H 1.08009 * 119.98765 * 180.02562 * 18 9 8 37 37 H 1.07994 * 120.20047 * 359.97315 * 20 19 18 38 38 H 1.07995 * 119.52005 * 180.21129 * 21 20 19 39 39 H 1.08002 * 119.50193 * 179.48725 * 22 21 20 40 40 H 1.07994 * 120.13140 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 1.5214 3.4833 1.3012 8 6 1.7517 4.2356 0.1891 9 6 1.6205 5.6407 0.2306 10 6 1.8644 6.3968 -0.9364 11 1 2.5332 6.0182 -1.6952 12 6 1.2399 7.6367 -1.1100 13 7 0.1959 7.9503 -0.3863 14 14 1.8965 8.8443 -2.3748 15 1 3.0766 8.2545 -3.0564 16 1 0.8397 9.1351 -3.3767 17 1 2.2954 10.1036 -1.6965 18 6 1.2512 6.2952 1.4116 19 6 1.0065 5.5566 2.5739 20 6 0.6330 6.1903 3.7751 21 6 0.3871 5.4387 4.8841 22 6 0.5140 4.0524 4.8523 23 6 0.8787 3.4059 3.7064 24 6 1.1303 4.1427 2.5444 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8533 0.9570 -1.0571 31 1 3.9995 0.9053 0.7161 32 1 3.9283 2.4719 -0.1253 33 1 1.4871 1.5660 2.0463 34 1 2.0378 3.7524 -0.7335 35 1 -0.2368 8.8100 -0.5064 36 1 1.1552 7.3709 1.4253 37 1 0.5306 7.2647 3.8135 38 1 0.0975 5.9257 5.8035 39 1 0.3213 3.4800 5.7477 40 1 0.9726 2.3301 3.6973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168003125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:02 Heat of formation + Delta-G solvation = 19.273458 kcal Electronic energy + Delta-G solvation = -20190.768376 eV Core-core repulsion = 17354.897897 eV Total energy + Delta-G solvation = -2835.870479 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.01306 -37.21218 -35.39993 -33.54175 -32.06208 -30.28310 -29.57850 -28.88829 -27.03728 -25.11559 -23.52276 -22.09382 -21.52133 -20.59731 -19.64037 -17.72775 -16.41591 -15.96487 -15.54771 -14.98429 -14.45245 -14.18411 -13.87607 -13.52149 -13.29481 -12.94640 -12.80538 -12.56557 -12.36330 -12.07019 -11.84206 -11.54360 -11.45775 -11.26114 -11.14394 -10.97782 -10.77165 -10.65409 -10.45605 -10.37898 -10.15281 -9.66667 -9.40127 -9.32900 -8.78238 -7.97287 -7.36897 -6.78413 -5.96498 -4.30939 1.96295 2.39800 2.99476 3.07000 3.11579 3.54832 3.90296 4.04899 4.15892 4.88800 4.89164 5.17271 5.21692 5.58670 5.70232 5.71891 5.75367 5.81320 5.84421 5.91085 5.92698 6.00166 6.06494 6.21848 6.32940 6.36575 6.43727 6.51467 6.72491 6.83163 6.87373 7.06383 7.13752 7.17707 7.41519 7.49787 7.61885 7.67459 7.95812 8.14563 8.21849 8.30173 8.50585 8.70448 8.89556 8.99062 10.15859 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.007194 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.635188 B = 3891.434388 C = 5576.681757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C 0.151 3.849 4 H 0.080 0.920 5 C -0.168 4.168 6 N -0.746 5.746 7 C 0.220 3.780 8 C -0.247 4.247 9 C 0.144 3.856 10 C -0.450 4.450 11 H 0.078 0.922 12 C 0.075 3.925 13 N -0.777 5.777 14 Si 0.905 3.095 15 H -0.260 1.260 16 H -0.274 1.274 17 H -0.271 1.271 18 C -0.244 4.244 19 C 0.025 3.975 20 C -0.146 4.146 21 C -0.111 4.111 22 C -0.209 4.209 23 C -0.068 4.068 24 C -0.167 4.167 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.387 0.613 34 H 0.099 0.901 35 H 0.280 0.720 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 -9.185 1.064 9.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.045 3.955 4 H 0.098 0.902 5 C -0.226 4.226 6 N -0.377 5.377 7 C 0.119 3.881 8 C -0.272 4.272 9 C 0.140 3.860 10 C -0.479 4.479 11 H 0.096 0.904 12 C -0.144 4.144 13 N -0.401 5.401 14 Si 0.730 3.270 15 H -0.184 1.184 16 H -0.200 1.200 17 H -0.196 1.196 18 C -0.265 4.265 19 C 0.024 3.976 20 C -0.165 4.165 21 C -0.130 4.130 22 C -0.228 4.228 23 C -0.087 4.087 24 C -0.170 4.170 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.221 0.779 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.114 0.886 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.631 -9.047 0.894 9.237 hybrid contribution 0.082 0.406 -0.245 0.481 sum 1.713 -8.641 0.649 8.833 Atomic orbital electron populations 1.21748 0.95472 1.00904 1.02700 1.21793 0.96489 0.96252 1.02103 1.20802 0.93917 0.92289 0.88475 0.90249 1.22280 0.96723 1.02774 1.00856 1.44425 1.78160 1.03792 1.11324 1.18324 0.94454 0.82128 0.93175 1.20386 1.16685 0.94189 0.95931 1.17216 0.86460 0.89697 0.92608 1.19652 1.23370 1.01247 1.03667 0.90416 1.25920 0.93388 0.98525 0.96576 1.69885 1.13935 1.21556 1.34719 0.86309 0.80001 0.80271 0.80463 1.18370 1.19981 1.19621 1.20967 1.15829 0.98959 0.90717 1.17767 0.94827 0.91257 0.93759 1.20868 1.03939 0.98586 0.93104 1.20452 1.01119 0.93979 0.97400 1.20170 1.10699 0.94430 0.97520 1.20403 0.98084 0.97251 0.92919 1.18254 1.13573 0.93083 0.92062 0.92261 0.92586 0.93240 0.91132 0.92033 0.92624 0.93030 0.91679 0.77885 0.88284 0.90854 0.86543 0.87503 0.88423 0.88579 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.80 37.16 0.36 -1.41 16 2 C -0.13 -1.45 5.47 -26.74 -0.15 -1.60 16 3 C 0.15 2.17 2.26 -67.94 -0.15 2.02 16 4 H 0.08 1.28 6.48 -51.93 -0.34 0.94 16 5 C -0.17 -2.27 9.41 37.16 0.35 -1.92 16 6 N -0.75 -12.52 4.65 -50.92 -0.24 -12.76 16 7 C 0.22 4.72 6.77 -82.06 -0.56 4.16 16 8 C -0.25 -5.79 8.49 -39.19 -0.33 -6.12 16 9 C 0.14 3.77 5.55 -107.01 -0.59 3.18 16 10 C -0.45 -11.68 8.99 -37.84 -0.34 -12.02 16 11 H 0.08 1.92 7.90 -52.49 -0.41 1.51 16 12 C 0.08 1.86 5.10 -17.35 -0.09 1.77 16 13 N -0.78 -20.02 11.00 55.55 0.61 -19.41 16 14 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 15 H -0.26 -5.21 7.11 56.52 0.40 -4.80 16 16 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 17 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 18 C -0.24 -6.46 8.38 -38.32 -0.32 -6.78 16 19 C 0.02 0.61 5.74 -106.87 -0.61 0.00 16 20 C -0.15 -3.24 9.78 -39.32 -0.38 -3.63 16 21 C -0.11 -2.19 9.95 -39.94 -0.40 -2.59 16 22 C -0.21 -3.99 9.96 -39.82 -0.40 -4.39 16 23 C -0.07 -1.35 9.54 -39.59 -0.38 -1.73 16 24 C -0.17 -3.79 5.90 -104.73 -0.62 -4.41 16 25 H 0.06 0.77 7.75 -51.93 -0.40 0.37 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 33 H 0.39 5.90 6.84 -40.82 -0.28 5.62 16 34 H 0.10 2.18 5.99 -52.48 -0.31 1.86 16 35 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 36 H 0.12 3.22 6.19 -52.48 -0.32 2.89 16 37 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.10 1.56 8.06 -52.49 -0.42 1.14 16 40 H 0.09 1.59 6.53 -52.49 -0.34 1.25 16 LS Contribution 324.34 15.07 4.89 4.89 Total: -1.00 -27.45 324.34 -10.13 -37.58 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -5.75 Total: 11.83 kcal Atomic # 6 Polarization: -30.86 SS G_CDS: -4.60 Total: -35.47 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.37 Total: -32.16 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.45 -10.13 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168003125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.850 kcal (2) G-P(sol) polarization free energy of solvation -27.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds