Wall clock time and date at job start Mon Mar 30 2020 01:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47384 * 2 1 4 4 H 1.09000 * 109.47410 * 305.00139 * 3 2 1 5 5 C 1.52998 * 109.47702 * 185.00066 * 3 2 1 6 6 N 1.46499 * 109.47159 * 64.99794 * 3 2 1 7 7 C 1.39297 * 120.00253 * 205.00005 * 6 3 2 8 8 C 1.36222 * 120.30265 * 0.02562 * 7 6 3 9 9 C 1.41187 * 120.65426 * 179.97438 * 8 7 6 10 10 C 1.41181 * 119.51131 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00257 * 333.32747 * 10 9 8 12 12 C 1.39914 * 119.99900 * 153.33369 * 10 9 8 13 13 N 1.30840 * 120.00013 * 342.85744 * 12 10 9 14 14 Si 1.86797 * 119.99760 * 162.86019 * 12 10 9 15 15 H 1.48497 * 109.47292 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.46910 * 119.99995 * 14 12 10 17 17 H 1.48500 * 109.47306 * 239.99572 * 14 12 10 18 18 C 1.39981 * 120.97502 * 359.97438 * 9 8 7 19 19 C 1.39869 * 120.02325 * 0.02585 * 18 9 8 20 20 C 1.40853 * 121.16369 * 180.02562 * 19 18 9 21 21 C 1.36208 * 119.60199 * 179.23330 * 20 19 18 22 22 C 1.39247 * 120.95087 * 0.72440 * 21 20 19 23 23 C 1.36528 * 120.99238 * 359.50517 * 22 21 20 24 24 C 1.39874 * 119.73030 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.46911 * 299.99877 * 1 2 3 26 26 H 1.09004 * 109.47080 * 59.99913 * 1 2 3 27 27 H 1.09004 * 109.47117 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47078 * 239.99600 * 2 1 3 29 29 H 1.09000 * 109.47408 * 120.00457 * 2 1 3 30 30 H 1.09003 * 109.47289 * 59.99597 * 5 3 2 31 31 H 1.09003 * 109.47138 * 300.00143 * 5 3 2 32 32 H 1.08998 * 109.47741 * 180.02562 * 5 3 2 33 33 H 0.97001 * 120.00006 * 25.00228 * 6 3 2 34 34 H 1.08004 * 119.67316 * 359.94865 * 8 7 6 35 35 H 0.96993 * 119.99874 * 179.97438 * 13 12 10 36 36 H 1.08009 * 119.98765 * 180.02562 * 18 9 8 37 37 H 1.07994 * 120.20047 * 359.97315 * 20 19 18 38 38 H 1.07995 * 119.52005 * 180.21129 * 21 20 19 39 39 H 1.08002 * 119.50193 * 179.48725 * 22 21 20 40 40 H 1.07994 * 120.13140 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1257 6 7 1.6525 2.0974 1.2518 7 6 1.5214 3.4833 1.3012 8 6 1.7517 4.2356 0.1891 9 6 1.6205 5.6407 0.2306 10 6 1.8644 6.3968 -0.9364 11 1 2.5332 6.0182 -1.6952 12 6 1.2399 7.6367 -1.1100 13 7 0.1959 7.9503 -0.3863 14 14 1.8965 8.8443 -2.3748 15 1 3.0766 8.2545 -3.0564 16 1 0.8397 9.1351 -3.3767 17 1 2.2954 10.1036 -1.6965 18 6 1.2512 6.2952 1.4116 19 6 1.0065 5.5566 2.5739 20 6 0.6330 6.1903 3.7751 21 6 0.3871 5.4387 4.8841 22 6 0.5140 4.0524 4.8523 23 6 0.8787 3.4059 3.7064 24 6 1.1303 4.1427 2.5444 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 3.8533 0.9570 -1.0571 31 1 3.9995 0.9053 0.7161 32 1 3.9283 2.4719 -0.1253 33 1 1.4871 1.5660 2.0463 34 1 2.0378 3.7524 -0.7335 35 1 -0.2368 8.8100 -0.5064 36 1 1.1552 7.3709 1.4253 37 1 0.5306 7.2647 3.8135 38 1 0.0975 5.9257 5.8035 39 1 0.3213 3.4800 5.7477 40 1 0.9726 2.3301 3.6973 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168003125.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:01 Heat of formation + Delta-G solvation = 6.443583 kcal Electronic energy + Delta-G solvation = -20191.324721 eV Core-core repulsion = 17354.897897 eV Total energy + Delta-G solvation = -2836.426824 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67240 -38.58850 -37.12805 -35.12215 -33.68053 -31.62889 -31.29084 -30.25210 -28.74440 -26.92244 -24.61705 -23.67106 -23.22506 -22.07650 -21.14533 -19.47154 -18.00688 -17.70480 -16.93323 -16.70570 -15.93926 -15.79302 -15.06003 -14.91465 -14.65672 -14.42005 -14.24135 -14.11975 -14.06870 -13.52773 -13.28034 -13.09855 -12.81019 -12.69534 -12.50637 -12.43778 -12.34362 -12.03106 -11.89782 -11.70219 -11.55360 -11.37975 -11.15680 -11.06104 -10.56521 -9.54792 -9.17048 -8.62061 -7.65569 -6.25872 0.26745 0.66436 1.35349 1.39051 1.52386 1.76344 2.19819 2.40844 2.64710 3.09635 3.84548 3.90523 4.12030 4.17910 4.19360 4.28142 4.37401 4.52818 4.68055 4.69892 4.79900 4.80089 4.88792 4.99682 5.03340 5.08284 5.11327 5.15847 5.23066 5.27302 5.33254 5.37993 5.45723 5.55418 5.70802 5.79075 5.90360 5.93669 6.13696 6.32638 6.50051 6.56074 6.80168 6.99932 7.09389 7.13796 8.35058 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013120 B = 0.007194 C = 0.005020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.635188 B = 3891.434388 C = 5576.681757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.145 3.855 4 H 0.057 0.943 5 C -0.162 4.162 6 N -0.730 5.730 7 C 0.237 3.763 8 C -0.275 4.275 9 C 0.119 3.881 10 C -0.489 4.489 11 H 0.076 0.924 12 C 0.034 3.966 13 N -0.816 5.816 14 Si 0.980 3.020 15 H -0.256 1.256 16 H -0.264 1.264 17 H -0.266 1.266 18 C -0.281 4.281 19 C 0.003 3.997 20 C -0.177 4.177 21 C -0.098 4.098 22 C -0.199 4.199 23 C -0.069 4.069 24 C -0.187 4.187 25 H 0.043 0.957 26 H 0.042 0.958 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.399 0.601 34 H 0.103 0.897 35 H 0.286 0.714 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 -11.927 2.517 12.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C 0.040 3.960 4 H 0.075 0.925 5 C -0.220 4.220 6 N -0.360 5.360 7 C 0.133 3.867 8 C -0.301 4.301 9 C 0.116 3.884 10 C -0.519 4.519 11 H 0.094 0.906 12 C -0.182 4.182 13 N -0.441 5.441 14 Si 0.800 3.200 15 H -0.179 1.179 16 H -0.189 1.189 17 H -0.191 1.191 18 C -0.303 4.303 19 C 0.003 3.997 20 C -0.195 4.195 21 C -0.116 4.116 22 C -0.217 4.217 23 C -0.088 4.088 24 C -0.190 4.190 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.235 0.765 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.152 0.848 39 H 0.157 0.843 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.793 -11.845 2.359 12.210 hybrid contribution -0.020 1.058 -0.450 1.150 sum 1.774 -10.787 1.909 11.097 Atomic orbital electron populations 1.21750 0.95867 1.01951 1.01286 1.21747 0.95986 0.93772 1.04059 1.21017 0.94609 0.93918 0.86480 0.92509 1.22211 0.95754 1.01282 1.02774 1.44481 1.76757 1.01939 1.12850 1.18347 0.92143 0.84081 0.92158 1.20362 1.19114 0.93474 0.97150 1.17558 0.86815 0.91234 0.92777 1.19880 1.24834 1.02969 1.04176 0.90610 1.26784 0.93068 0.99773 0.98567 1.69968 1.15213 1.22301 1.36652 0.85199 0.79451 0.77518 0.77782 1.17907 1.18899 1.19108 1.20819 1.19257 0.97939 0.92242 1.18083 0.95032 0.92622 0.94007 1.20996 1.05916 0.99033 0.93569 1.20905 0.98504 0.94598 0.97595 1.20723 1.07979 0.94347 0.98665 1.20780 0.97085 0.99015 0.91884 1.18610 1.13883 0.92720 0.93758 0.93795 0.93928 0.90955 0.88936 0.90212 0.90219 0.91666 0.94809 0.76518 0.87938 0.90358 0.89226 0.87799 0.84788 0.84283 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.80 71.98 0.71 -2.48 16 2 C -0.12 -2.28 5.47 30.59 0.17 -2.12 16 3 C 0.14 3.96 2.26 44.99 0.10 4.06 16 4 H 0.06 1.84 6.48 -2.39 -0.02 1.83 16 5 C -0.16 -4.13 9.41 71.98 0.68 -3.45 16 6 N -0.73 -23.47 4.65 -315.00 -1.46 -24.94 16 7 C 0.24 10.27 6.77 39.52 0.27 10.54 16 8 C -0.28 -13.65 8.49 22.52 0.19 -13.46 16 9 C 0.12 6.74 5.55 -21.41 -0.12 6.62 16 10 C -0.49 -27.28 8.99 23.40 0.21 -27.07 16 11 H 0.08 4.04 7.90 -2.91 -0.02 4.02 16 12 C 0.03 1.76 5.10 85.25 0.44 2.20 16 13 N -0.82 -44.97 11.00 21.82 0.24 -44.73 16 14 Si 0.98 39.47 29.59 68.60 2.03 41.50 16 15 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 16 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 17 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 18 C -0.28 -16.06 8.38 23.09 0.19 -15.87 16 19 C 0.00 0.17 5.74 -21.32 -0.12 0.05 16 20 C -0.18 -7.93 9.78 22.44 0.22 -7.71 16 21 C -0.10 -3.60 9.95 22.04 0.22 -3.38 16 22 C -0.20 -6.72 9.96 22.11 0.22 -6.50 16 23 C -0.07 -2.53 9.54 22.27 0.21 -2.32 16 24 C -0.19 -8.47 5.90 -19.93 -0.12 -8.59 16 25 H 0.04 1.05 7.75 -2.39 -0.02 1.03 16 26 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.03 1.07 7.68 -2.39 -0.02 1.05 16 33 H 0.40 10.92 6.84 -92.71 -0.63 10.29 16 34 H 0.10 4.82 5.99 -2.91 -0.02 4.80 16 35 H 0.29 14.22 8.30 -92.71 -0.77 13.45 16 36 H 0.09 5.44 6.19 -2.91 -0.02 5.42 16 37 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.13 3.92 8.06 -2.91 -0.02 3.90 16 39 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.13 3.77 6.53 -2.91 -0.02 3.75 16 Total: -1.00 -65.04 324.34 4.67 -60.37 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: 0.40 Total: 37.28 kcal Atomic # 6 Polarization: -72.94 SS G_CDS: 3.46 Total: -69.48 kcal Atomic # 7 Polarization: -68.44 SS G_CDS: -1.22 Total: -69.67 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -65.04 4.67 -60.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168003125.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.810 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds