Wall clock time and date at job start Mon Mar 30 2020 00:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39369 * 119.51927 * 2 1 4 4 C 1.36111 * 121.00076 * 179.69273 * 3 2 1 5 5 C 1.40529 * 119.69400 * 0.28044 * 4 3 2 6 6 C 1.40599 * 121.13795 * 180.02562 * 5 4 3 7 7 C 1.35900 * 119.90792 * 179.97438 * 6 5 4 8 8 C 1.40030 * 120.92047 * 0.02562 * 7 6 5 9 9 N 1.39619 * 119.66553 * 179.97438 * 8 7 6 10 10 C 1.46495 * 120.00219 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47711 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47480 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47078 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00082 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99599 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00435 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99623 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47360 * 59.99767 * 17 15 13 19 19 H 1.48503 * 109.47275 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46939 * 299.99701 * 17 15 13 21 21 C 1.37743 * 120.67469 * 359.97438 * 8 7 6 22 22 C 1.40443 * 119.49597 * 0.02562 * 21 8 7 23 23 C 1.36091 * 119.51732 * 180.26084 * 2 1 3 24 24 H 1.09005 * 109.46655 * 90.00195 * 1 2 3 25 25 H 1.09001 * 109.47737 * 209.99738 * 1 2 3 26 26 H 1.09002 * 109.47108 * 330.00686 * 1 2 3 27 27 H 1.08002 * 119.50150 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.15360 * 180.25019 * 4 3 2 29 29 H 1.08005 * 120.04422 * 359.95859 * 6 5 4 30 30 H 1.08006 * 119.53943 * 180.02562 * 7 6 5 31 31 H 0.97004 * 120.00266 * 180.02562 * 9 8 7 32 32 H 1.09004 * 109.47348 * 300.00777 * 10 9 8 33 33 H 1.09009 * 109.46859 * 60.00105 * 10 9 8 34 34 H 1.09004 * 109.47181 * 300.00674 * 11 10 9 35 35 H 1.09001 * 109.47190 * 59.99736 * 11 10 9 36 36 H 1.09002 * 109.47323 * 299.99799 * 12 11 10 37 37 H 1.08993 * 109.47535 * 60.00074 * 12 11 10 38 38 H 0.96994 * 119.99875 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.25549 * 180.02562 * 21 8 7 40 40 H 1.08003 * 120.17099 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2128 0.0000 4 6 3.5543 1.2480 0.0063 5 6 4.2818 0.0456 0.0069 6 6 5.6877 0.0466 0.0138 7 6 6.3661 -1.1310 0.0147 8 6 5.6844 -2.3542 0.0083 9 7 6.4077 -3.5484 0.0089 10 6 7.8723 -3.5177 0.0157 11 6 8.4125 -4.9492 0.0142 12 6 9.9421 -4.9171 0.0219 13 6 10.4741 -6.3271 0.0199 14 1 9.7897 -7.1625 0.0142 15 6 11.8347 -6.5505 0.0253 16 7 12.6682 -5.5332 0.0318 17 14 12.4941 -8.2983 0.0235 18 1 12.0193 -9.0053 -1.1929 19 1 13.9788 -8.2672 0.0296 20 1 12.0086 -9.0117 1.2320 21 6 4.3075 -2.3912 0.0015 22 6 3.5834 -1.1878 0.0003 23 6 2.1775 -1.1843 -0.0054 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6377 2.1387 -0.0004 28 1 4.0724 2.1955 0.0102 29 1 6.2279 0.9818 0.0181 30 1 7.4461 -1.1234 0.0205 31 1 5.9404 -4.3985 0.0042 32 1 8.2289 -2.9943 -0.8715 33 1 8.2207 -2.9984 0.9085 34 1 8.0559 -5.4730 0.9012 35 1 8.0641 -5.4682 -0.8787 36 1 10.2990 -4.3933 -0.8649 37 1 10.2902 -4.3984 0.9150 38 1 13.6252 -5.6905 0.0360 39 1 3.7886 -3.3384 -0.0030 40 1 1.6324 -2.1166 -0.0092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:25 Heat of formation + Delta-G solvation = 15.952648 kcal Electronic energy + Delta-G solvation = -18642.818479 eV Core-core repulsion = 15806.804000 eV Total energy + Delta-G solvation = -2836.014480 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.31188 -37.81185 -35.46651 -33.65360 -32.59330 -31.54490 -30.97065 -28.50539 -26.86318 -26.08741 -23.26621 -22.87746 -21.87552 -21.30354 -20.30263 -17.50100 -16.93292 -16.54897 -15.95087 -14.94510 -14.87212 -14.72668 -14.49566 -14.41793 -14.03934 -13.33237 -13.20229 -13.15009 -12.99310 -12.40851 -12.25535 -12.21838 -11.91584 -11.69091 -11.17020 -11.08967 -10.85657 -10.82791 -10.63018 -10.61892 -10.00367 -9.85324 -9.51017 -9.23154 -9.18264 -8.40748 -8.03825 -7.03613 -6.05780 -4.08778 0.64186 1.21470 2.17376 3.08924 3.29885 3.34526 3.36606 3.66103 4.23029 4.41554 4.62524 4.73583 4.97043 5.00135 5.14723 5.22071 5.30143 5.36512 5.39189 5.41645 5.50802 5.62987 5.67795 5.68090 5.83427 5.93632 6.04845 6.09491 6.25084 6.27929 6.41574 6.53881 6.56136 6.61232 6.66692 6.89546 6.93559 7.04300 7.50415 7.57816 7.70411 7.90755 7.92711 8.34333 8.97426 9.55635 11.05504 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.054437 B = 0.002598 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.232826 B =10773.634528 C =11256.812363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.148 4.148 4 C -0.082 4.082 5 C -0.109 4.109 6 C -0.064 4.064 7 C -0.168 4.168 8 C 0.234 3.766 9 N -0.740 5.740 10 C 0.118 3.882 11 C -0.120 4.120 12 C 0.025 3.975 13 C -0.523 4.523 14 H 0.055 0.945 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.227 4.227 22 C 0.009 3.991 23 C -0.129 4.129 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.399 0.601 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.262 0.738 39 H 0.121 0.879 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.830 12.628 -0.074 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.166 4.166 4 C -0.100 4.100 5 C -0.111 4.111 6 C -0.082 4.082 7 C -0.189 4.189 8 C 0.128 3.872 9 N -0.366 5.366 10 C -0.006 4.006 11 C -0.158 4.158 12 C -0.013 4.013 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.534 5.534 17 Si 0.721 3.279 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.252 4.252 22 C 0.008 3.992 23 C -0.148 4.148 24 H 0.087 0.913 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.144 0.856 30 H 0.145 0.855 31 H 0.234 0.766 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.037 0.963 37 H 0.037 0.963 38 H 0.072 0.928 39 H 0.139 0.861 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.361 12.678 -0.069 23.986 hybrid contribution 0.397 -1.303 -0.008 1.362 sum -19.964 11.375 -0.078 22.977 Atomic orbital electron populations 1.20819 0.91643 1.02541 1.02129 1.19547 0.95793 0.93211 0.99044 1.20546 0.94311 0.97092 1.04687 1.20943 0.94128 0.96839 0.98078 1.17934 0.93358 0.92975 1.06814 1.20825 0.92764 0.97777 0.96863 1.20618 1.00425 0.91166 1.06704 1.17884 0.90827 0.86853 0.91668 1.45115 1.06375 1.05084 1.80046 1.21658 0.78001 1.00184 1.00713 1.21849 1.00498 0.92529 1.00948 1.19022 0.87360 0.97404 0.97501 1.21167 0.91582 0.92361 1.51055 0.92715 1.25025 0.97148 0.97054 0.95211 1.69945 1.02699 1.30207 1.50509 0.86632 0.77734 0.84852 0.78635 1.20224 1.21235 1.20217 1.20405 0.91700 0.97321 1.15765 1.17703 0.92940 0.92192 0.96318 1.20767 0.92844 0.97554 1.03589 0.91341 0.91696 0.91741 0.86667 0.86114 0.85642 0.85489 0.76637 0.92451 0.92443 0.92749 0.92744 0.96348 0.96347 0.92849 0.86150 0.86192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 9.98 36.00 0.36 -0.49 16 2 C -0.08 -0.79 5.84 -104.98 -0.61 -1.40 16 3 C -0.15 -1.51 9.58 -39.93 -0.38 -1.89 16 4 C -0.08 -0.89 9.76 -39.48 -0.39 -1.28 16 5 C -0.11 -1.41 5.74 -106.80 -0.61 -2.02 16 6 C -0.06 -0.78 9.74 -39.53 -0.39 -1.17 16 7 C -0.17 -2.30 9.21 -39.75 -0.37 -2.67 16 8 C 0.23 3.35 6.64 -83.82 -0.56 2.79 16 9 N -0.74 -10.70 5.72 -58.65 -0.34 -11.04 16 10 C 0.12 1.93 4.89 -4.05 -0.02 1.91 16 11 C -0.12 -2.33 5.27 -26.74 -0.14 -2.47 16 12 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 13 C -0.52 -14.55 9.11 -34.44 -0.31 -14.86 16 14 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 17 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C -0.23 -3.06 9.63 -38.93 -0.37 -3.43 16 22 C 0.01 0.12 5.74 -106.84 -0.61 -0.49 16 23 C -0.13 -1.50 9.37 -39.46 -0.37 -1.87 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 26 H 0.06 0.41 8.08 -51.93 -0.42 -0.01 16 27 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 30 H 0.13 1.67 6.66 -52.48 -0.35 1.33 16 31 H 0.40 5.24 8.47 -40.82 -0.35 4.90 16 32 H 0.06 0.95 7.93 -51.93 -0.41 0.54 16 33 H 0.06 0.95 7.92 -51.92 -0.41 0.54 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -30.23 334.99 -10.71 -40.94 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.13 Total: 1.79 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -5.01 Total: -27.34 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.40 Total: -36.84 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.23 -10.71 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.895 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds