Wall clock time and date at job start Mon Mar 30 2020 00:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39369 * 119.51927 * 2 1 4 4 C 1.36111 * 121.00076 * 179.69273 * 3 2 1 5 5 C 1.40529 * 119.69400 * 0.28044 * 4 3 2 6 6 C 1.40599 * 121.13795 * 180.02562 * 5 4 3 7 7 C 1.35900 * 119.90792 * 179.97438 * 6 5 4 8 8 C 1.40030 * 120.92047 * 0.02562 * 7 6 5 9 9 N 1.39619 * 119.66553 * 179.97438 * 8 7 6 10 10 C 1.46495 * 120.00219 * 359.97438 * 9 8 7 11 11 C 1.52997 * 109.47711 * 180.02562 * 10 9 8 12 12 C 1.52995 * 109.47480 * 180.02562 * 11 10 9 13 13 C 1.50707 * 109.47078 * 180.02562 * 12 11 10 14 14 H 1.07995 * 120.00082 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99599 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00435 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99623 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47360 * 59.99767 * 17 15 13 19 19 H 1.48503 * 109.47275 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46939 * 299.99701 * 17 15 13 21 21 C 1.37743 * 120.67469 * 359.97438 * 8 7 6 22 22 C 1.40443 * 119.49597 * 0.02562 * 21 8 7 23 23 C 1.36091 * 119.51732 * 180.26084 * 2 1 3 24 24 H 1.09005 * 109.46655 * 90.00195 * 1 2 3 25 25 H 1.09001 * 109.47737 * 209.99738 * 1 2 3 26 26 H 1.09002 * 109.47108 * 330.00686 * 1 2 3 27 27 H 1.08002 * 119.50150 * 359.97438 * 3 2 1 28 28 H 1.08000 * 120.15360 * 180.25019 * 4 3 2 29 29 H 1.08005 * 120.04422 * 359.95859 * 6 5 4 30 30 H 1.08006 * 119.53943 * 180.02562 * 7 6 5 31 31 H 0.97004 * 120.00266 * 180.02562 * 9 8 7 32 32 H 1.09004 * 109.47348 * 300.00777 * 10 9 8 33 33 H 1.09009 * 109.46859 * 60.00105 * 10 9 8 34 34 H 1.09004 * 109.47181 * 300.00674 * 11 10 9 35 35 H 1.09001 * 109.47190 * 59.99736 * 11 10 9 36 36 H 1.09002 * 109.47323 * 299.99799 * 12 11 10 37 37 H 1.08993 * 109.47535 * 60.00074 * 12 11 10 38 38 H 0.96994 * 119.99875 * 179.97438 * 16 15 13 39 39 H 1.08000 * 120.25549 * 180.02562 * 21 8 7 40 40 H 1.08003 * 120.17099 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1936 1.2128 0.0000 4 6 3.5543 1.2480 0.0063 5 6 4.2818 0.0456 0.0069 6 6 5.6877 0.0466 0.0138 7 6 6.3661 -1.1310 0.0147 8 6 5.6844 -2.3542 0.0083 9 7 6.4077 -3.5484 0.0089 10 6 7.8723 -3.5177 0.0157 11 6 8.4125 -4.9492 0.0142 12 6 9.9421 -4.9171 0.0219 13 6 10.4741 -6.3271 0.0199 14 1 9.7897 -7.1625 0.0142 15 6 11.8347 -6.5505 0.0253 16 7 12.6682 -5.5332 0.0318 17 14 12.4941 -8.2983 0.0235 18 1 12.0193 -9.0053 -1.1929 19 1 13.9788 -8.2672 0.0296 20 1 12.0086 -9.0117 1.2320 21 6 4.3075 -2.3912 0.0015 22 6 3.5834 -1.1878 0.0003 23 6 2.1775 -1.1843 -0.0054 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8901 0.5137 27 1 1.6377 2.1387 -0.0004 28 1 4.0724 2.1955 0.0102 29 1 6.2279 0.9818 0.0181 30 1 7.4461 -1.1234 0.0205 31 1 5.9404 -4.3985 0.0042 32 1 8.2289 -2.9943 -0.8715 33 1 8.2207 -2.9984 0.9085 34 1 8.0559 -5.4730 0.9012 35 1 8.0641 -5.4682 -0.8787 36 1 10.2990 -4.3933 -0.8649 37 1 10.2902 -4.3984 0.9150 38 1 13.6252 -5.6905 0.0360 39 1 3.7886 -3.3384 -0.0030 40 1 1.6324 -2.1166 -0.0092 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168434437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:25 Heat of formation + Delta-G solvation = 1.258755 kcal Electronic energy + Delta-G solvation = -18643.455654 eV Core-core repulsion = 15806.804000 eV Total energy + Delta-G solvation = -2836.651655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.22778 -38.84152 -36.74447 -35.30710 -33.82135 -32.87590 -31.99029 -29.79941 -27.70645 -27.62750 -24.89637 -23.82859 -22.82870 -22.44456 -21.82634 -18.54209 -18.48028 -17.90131 -17.08190 -16.52460 -16.33558 -15.89820 -15.60085 -15.42037 -14.87174 -14.45042 -14.22471 -14.20196 -14.05482 -13.83962 -13.68831 -13.53705 -13.00269 -12.80806 -12.64016 -12.54100 -12.34581 -12.21537 -11.90986 -11.61074 -11.59660 -11.46380 -11.21329 -10.89064 -10.56555 -10.22429 -8.94721 -8.21769 -8.07343 -6.32836 -0.26216 0.27985 1.24921 1.39820 1.42430 1.50383 2.17434 2.38105 2.52144 3.11761 3.29472 3.76423 3.98198 4.10269 4.14641 4.17742 4.21313 4.31361 4.41499 4.46599 4.53397 4.57607 4.82483 4.83695 4.88411 4.94413 4.97013 5.09316 5.13144 5.16699 5.20326 5.33106 5.42278 5.47824 5.48633 5.69431 5.72753 5.78751 5.81952 5.92589 6.17550 6.21605 6.39700 6.82091 6.85309 7.36445 8.89857 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.054437 B = 0.002598 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.232826 B =10773.634528 C =11256.812363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 C -0.149 4.149 4 C -0.089 4.089 5 C -0.128 4.128 6 C -0.060 4.060 7 C -0.191 4.191 8 C 0.215 3.785 9 N -0.740 5.740 10 C 0.135 3.865 11 C -0.104 4.104 12 C 0.027 3.973 13 C -0.545 4.545 14 H 0.061 0.939 15 C -0.001 4.001 16 N -0.932 5.932 17 Si 0.965 3.035 18 H -0.267 1.267 19 H -0.283 1.283 20 H -0.267 1.267 21 C -0.230 4.230 22 C -0.012 4.012 23 C -0.147 4.147 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.142 0.858 28 H 0.145 0.855 29 H 0.150 0.850 30 H 0.124 0.876 31 H 0.405 0.595 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.058 0.942 36 H -0.004 1.004 37 H -0.004 1.004 38 H 0.264 0.736 39 H 0.130 0.870 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.842 13.000 -0.079 26.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.076 4.076 3 C -0.167 4.167 4 C -0.107 4.107 5 C -0.129 4.129 6 C -0.078 4.078 7 C -0.211 4.211 8 C 0.111 3.889 9 N -0.369 5.369 10 C 0.011 3.989 11 C -0.142 4.142 12 C -0.011 4.011 13 C -0.583 4.583 14 H 0.079 0.921 15 C -0.199 4.199 16 N -0.572 5.572 17 Si 0.789 3.211 18 H -0.192 1.192 19 H -0.209 1.209 20 H -0.192 1.192 21 C -0.255 4.255 22 C -0.013 4.013 23 C -0.165 4.165 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.097 0.903 27 H 0.160 0.840 28 H 0.162 0.838 29 H 0.168 0.832 30 H 0.142 0.858 31 H 0.240 0.760 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.014 0.986 37 H 0.014 0.986 38 H 0.073 0.927 39 H 0.148 0.852 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.412 13.058 -0.075 25.939 hybrid contribution 0.883 -1.279 -0.008 1.554 sum -21.529 11.779 -0.082 24.541 Atomic orbital electron populations 1.20879 0.89422 1.03638 1.03082 1.19974 0.97543 0.92874 0.97222 1.20953 0.94343 0.98175 1.03241 1.21256 0.94685 0.97080 0.97675 1.18249 0.93759 0.93764 1.07133 1.21113 0.92939 0.98288 0.95483 1.20727 1.00472 0.91702 1.08239 1.18022 0.91243 0.86782 0.92900 1.44850 1.05234 1.05672 1.81119 1.21269 0.79395 0.97875 1.00395 1.21564 0.96622 0.94658 1.01327 1.18919 0.91134 0.95805 0.95257 1.21647 0.92197 0.93692 1.50766 0.92104 1.25980 0.97577 1.01601 0.94732 1.70080 1.03027 1.32619 1.51480 0.85504 0.77007 0.79393 0.79171 1.19199 1.20877 1.19187 1.20578 0.91478 0.98099 1.15340 1.18001 0.94003 0.92373 0.96910 1.20977 0.92306 0.98811 1.04411 0.90313 0.91058 0.90273 0.83996 0.83755 0.83247 0.85783 0.75974 0.92873 0.92863 0.92291 0.92286 0.98608 0.98601 0.92721 0.85195 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.98 71.23 0.71 -0.64 16 2 C -0.08 -1.41 5.84 -20.09 -0.12 -1.52 16 3 C -0.15 -2.62 9.58 22.05 0.21 -2.41 16 4 C -0.09 -1.75 9.76 22.33 0.22 -1.53 16 5 C -0.13 -3.16 5.74 -21.28 -0.12 -3.28 16 6 C -0.06 -1.44 9.74 22.30 0.22 -1.22 16 7 C -0.19 -5.28 9.21 22.16 0.20 -5.08 16 8 C 0.22 6.22 6.64 38.22 0.25 6.48 16 9 N -0.74 -21.60 5.72 -339.48 -1.94 -23.54 16 10 C 0.13 4.52 4.89 86.38 0.42 4.94 16 11 C -0.10 -4.08 5.27 30.59 0.16 -3.92 16 12 C 0.03 1.37 4.97 29.85 0.15 1.52 16 13 C -0.55 -30.66 9.11 25.60 0.23 -30.43 16 14 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 15 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 16 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 17 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 18 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 19 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 C -0.23 -6.19 9.63 22.69 0.22 -5.98 16 22 C -0.01 -0.32 5.74 -21.30 -0.12 -0.44 16 23 C -0.15 -3.21 9.37 22.35 0.21 -3.00 16 24 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.07 0.77 8.07 -2.39 -0.02 0.75 16 26 H 0.08 0.72 8.08 -2.39 -0.02 0.70 16 27 H 0.14 1.70 8.06 -2.91 -0.02 1.67 16 28 H 0.14 2.04 8.06 -2.91 -0.02 2.01 16 29 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 30 H 0.12 3.39 6.66 -2.91 -0.02 3.37 16 31 H 0.40 10.59 8.47 -92.71 -0.79 9.81 16 32 H 0.05 1.81 7.93 -2.38 -0.02 1.79 16 33 H 0.05 1.82 7.92 -2.38 -0.02 1.80 16 34 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 38 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 39 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -65.26 334.99 3.91 -61.35 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.23 Total: 18.40 kcal Atomic # 6 Polarization: -49.40 SS G_CDS: 3.31 Total: -46.09 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -1.66 Total: -79.63 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -65.26 3.91 -61.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.611 kcal (2) G-P(sol) polarization free energy of solvation -65.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds