Wall clock time and date at job start Mon Mar 30 2020 00:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36176 * 119.45431 * 2 1 4 4 C 1.40512 * 119.95743 * 180.02562 * 3 2 1 5 5 C 1.40580 * 121.19217 * 180.02562 * 4 3 2 6 6 C 1.36113 * 119.65955 * 179.97438 * 5 4 3 7 7 C 1.39341 * 120.97250 * 0.02796 * 6 5 4 8 8 C 1.36162 * 120.96461 * 359.93088 * 7 6 5 9 9 C 1.40359 * 119.67073 * 0.08373 * 8 7 6 10 10 C 1.41141 * 121.26479 * 179.97438 * 9 8 7 11 11 N 1.39322 * 120.30071 * 359.97438 * 10 9 8 12 12 C 1.46496 * 119.99738 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99907 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99654 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47022 * 89.99986 * 19 17 15 21 21 H 1.48502 * 109.46769 * 209.99494 * 19 17 15 22 22 H 1.48495 * 109.47280 * 329.99669 * 19 17 15 23 23 C 1.37878 * 119.39500 * 180.25559 * 10 9 8 24 24 H 1.09001 * 109.47296 * 90.00165 * 1 2 3 25 25 H 1.09004 * 109.47082 * 209.99896 * 1 2 3 26 26 H 1.09001 * 109.47446 * 330.00301 * 1 2 3 27 27 H 1.07999 * 120.01869 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.17033 * 0.02562 * 5 4 3 29 29 H 1.07993 * 119.50792 * 180.02562 * 6 5 4 30 30 H 1.08000 * 119.51880 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.16698 * 180.02562 * 8 7 6 32 32 H 0.96998 * 120.00070 * 0.02562 * 11 10 9 33 33 H 1.09001 * 109.47464 * 60.00646 * 12 11 10 34 34 H 1.09001 * 109.47459 * 300.00361 * 12 11 10 35 35 H 1.09001 * 109.47002 * 299.99701 * 13 12 11 36 36 H 1.08993 * 109.46955 * 60.00138 * 13 12 11 37 37 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 38 38 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 39 39 H 0.96999 * 119.99682 * 180.02562 * 18 17 15 40 40 H 1.08004 * 119.62739 * 179.70519 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1766 1.1858 0.0000 4 6 3.5817 1.1981 -0.0005 5 6 4.2992 2.4070 0.0000 6 6 5.6601 2.3825 0.0000 7 6 6.3556 1.1751 -0.0012 8 6 5.6935 -0.0147 -0.0009 9 6 4.2900 -0.0289 -0.0012 10 6 3.5697 -1.2426 -0.0014 11 7 4.2454 -2.4610 -0.0019 12 6 3.4911 -3.7169 -0.0027 13 6 4.4652 -4.8968 -0.0024 14 6 3.6775 -6.2084 -0.0039 15 6 4.6369 -7.3705 -0.0043 16 1 5.7019 -7.1916 -0.0031 17 6 4.1549 -8.6624 -0.0050 18 7 4.9922 -9.6766 -0.0048 19 14 2.3127 -8.9720 -0.0063 20 1 1.8255 -9.0535 -1.4068 21 1 2.0251 -10.2501 0.6930 22 1 1.6232 -7.8586 0.6937 23 6 2.1913 -1.2116 -0.0071 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6280 2.1160 -0.0004 28 1 3.7733 3.3503 0.0012 29 1 6.2088 3.3127 0.0008 30 1 7.4355 1.1831 -0.0016 31 1 6.2456 -0.9430 -0.0013 32 1 5.2153 -2.4777 -0.0017 33 1 2.8638 -3.7634 -0.8929 34 1 2.8633 -3.7643 0.8871 35 1 5.0933 -4.8497 -0.8920 36 1 5.0921 -4.8501 0.8879 37 1 3.0490 -6.2559 0.8855 38 1 3.0507 -6.2548 -0.8945 39 1 4.6531 -10.5854 -0.0058 40 1 1.6364 -2.1381 -0.0121 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168436309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:58 Heat of formation + Delta-G solvation = 21.238449 kcal Electronic energy + Delta-G solvation = -19141.984234 eV Core-core repulsion = 16306.198963 eV Total energy + Delta-G solvation = -2835.785270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.49287 -37.33479 -36.20792 -34.00628 -32.26396 -31.52520 -30.77187 -28.82659 -27.15778 -26.34585 -23.64828 -22.53967 -21.99210 -20.95706 -20.24924 -17.48780 -17.26787 -16.72084 -16.16914 -15.31407 -15.06048 -14.85273 -14.22565 -14.04150 -14.00775 -13.90102 -13.23988 -13.08729 -12.72602 -12.58713 -12.48768 -12.19837 -11.92207 -11.83833 -11.27183 -11.14667 -10.98896 -10.85665 -10.79885 -10.27553 -10.06343 -9.87758 -9.74689 -9.27466 -8.86640 -8.59560 -8.48736 -6.98081 -6.09886 -4.08895 0.70083 1.04906 2.18083 3.05291 3.27089 3.34832 3.37526 3.49522 4.16899 4.40167 4.63297 4.75484 4.85107 4.91865 5.16051 5.23800 5.24569 5.34779 5.39233 5.43436 5.55148 5.55926 5.56514 5.69530 5.80773 5.91268 5.99103 6.00848 6.12306 6.31317 6.37573 6.39189 6.45111 6.49426 6.71446 6.72035 6.84295 7.00987 7.16497 7.30465 7.39980 7.71676 7.77553 8.46694 8.94033 9.51911 11.03465 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.003637 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.245821 B = 7696.347079 C = 8798.541169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.020 4.020 3 C -0.190 4.190 4 C -0.002 4.002 5 C -0.123 4.123 6 C -0.107 4.107 7 C -0.142 4.142 8 C -0.087 4.087 9 C -0.107 4.107 10 C 0.243 3.757 11 N -0.733 5.733 12 C 0.117 3.883 13 C -0.113 4.113 14 C -0.010 4.010 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.902 5.902 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.228 4.228 24 H 0.070 0.930 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.118 0.882 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.399 0.601 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.018 0.982 38 H 0.014 0.986 39 H 0.264 0.736 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 24.069 0.007 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.020 4.020 3 C -0.211 4.211 4 C -0.003 4.003 5 C -0.142 4.142 6 C -0.125 4.125 7 C -0.161 4.161 8 C -0.105 4.105 9 C -0.109 4.109 10 C 0.135 3.865 11 N -0.358 5.358 12 C -0.006 4.006 13 C -0.151 4.151 14 C -0.047 4.047 15 C -0.561 4.561 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.541 5.541 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.253 4.253 24 H 0.089 0.911 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.234 0.766 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.032 0.968 39 H 0.073 0.927 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.398 23.643 0.012 24.048 hybrid contribution -0.447 -0.420 -0.027 0.614 sum -4.844 23.222 -0.015 23.722 Atomic orbital electron populations 1.20849 0.91580 1.02628 1.02278 1.19274 0.95575 0.92445 0.94751 1.20444 0.92383 0.97457 1.10789 1.17809 0.93447 0.91938 0.97092 1.20956 0.94240 0.96884 1.02082 1.20807 0.94448 0.97846 0.99359 1.20685 0.99824 0.92345 1.03199 1.20829 0.92983 0.98287 0.98417 1.17713 0.93266 0.91866 1.08100 1.17830 0.91731 0.85106 0.91795 1.44993 1.08655 1.02909 1.79276 1.21693 0.95533 0.82462 1.00955 1.21682 0.97901 0.93766 1.01798 1.19492 0.96260 0.92458 0.96538 1.21094 0.94475 0.89369 1.51198 0.91040 1.25039 0.97853 0.96147 0.94450 1.69912 1.34523 0.98803 1.50872 0.86763 0.86093 0.77792 0.78558 1.20232 1.21323 1.18962 1.20327 0.91862 0.98114 1.14960 0.91118 0.91499 0.91662 0.86418 0.85896 0.86378 0.86287 0.86254 0.76559 0.92231 0.92228 0.92136 0.92107 0.96359 0.96794 0.92652 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.09 9.97 36.00 0.36 -0.73 16 2 C -0.02 -0.24 5.84 -105.03 -0.61 -0.85 16 3 C -0.19 -2.28 9.35 -39.47 -0.37 -2.65 16 4 C 0.00 -0.03 5.74 -106.85 -0.61 -0.64 16 5 C -0.12 -1.33 9.77 -39.46 -0.39 -1.71 16 6 C -0.11 -1.07 9.95 -39.94 -0.40 -1.46 16 7 C -0.14 -1.51 9.95 -39.92 -0.40 -1.90 16 8 C -0.09 -1.05 9.50 -39.53 -0.38 -1.42 16 9 C -0.11 -1.46 5.75 -106.69 -0.61 -2.07 16 10 C 0.24 3.47 6.67 -83.49 -0.56 2.91 16 11 N -0.73 -10.34 5.66 -58.39 -0.33 -10.67 16 12 C 0.12 1.81 4.91 -4.04 -0.02 1.79 16 13 C -0.11 -2.10 5.27 -26.73 -0.14 -2.24 16 14 C -0.01 -0.22 4.04 -27.89 -0.11 -0.33 16 15 C -0.52 -14.67 9.66 -34.44 -0.33 -15.01 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.64 13.96 55.43 0.77 -26.86 16 19 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 23 C -0.23 -3.14 8.92 -39.38 -0.35 -3.50 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 26 H 0.06 0.52 8.07 -51.93 -0.42 0.10 16 27 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 28 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 29 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 30 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 31 H 0.12 1.27 6.44 -52.49 -0.34 0.94 16 32 H 0.40 5.13 6.58 -40.82 -0.27 4.86 16 33 H 0.06 0.92 7.93 -51.93 -0.41 0.50 16 34 H 0.06 0.92 7.95 -51.93 -0.41 0.51 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.42 7.20 -51.93 -0.37 0.04 16 38 H 0.01 0.31 7.57 -51.93 -0.39 -0.08 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.12 1.65 6.69 -52.48 -0.35 1.29 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -30.90 328.06 -10.23 -41.14 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -5.93 Total: 2.72 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -5.02 Total: -28.00 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.44 Total: -37.53 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.90 -10.23 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.375 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds