Wall clock time and date at job start Mon Mar 30 2020 00:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36176 * 119.45431 * 2 1 4 4 C 1.40512 * 119.95743 * 180.02562 * 3 2 1 5 5 C 1.40580 * 121.19217 * 180.02562 * 4 3 2 6 6 C 1.36113 * 119.65955 * 179.97438 * 5 4 3 7 7 C 1.39341 * 120.97250 * 0.02796 * 6 5 4 8 8 C 1.36162 * 120.96461 * 359.93088 * 7 6 5 9 9 C 1.40359 * 119.67073 * 0.08373 * 8 7 6 10 10 C 1.41141 * 121.26479 * 179.97438 * 9 8 7 11 11 N 1.39322 * 120.30071 * 359.97438 * 10 9 8 12 12 C 1.46496 * 119.99738 * 180.02562 * 11 10 9 13 13 C 1.53006 * 109.46995 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47127 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47055 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00290 * 0.02562 * 15 14 13 17 17 C 1.37887 * 120.00079 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99907 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99654 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47022 * 89.99986 * 19 17 15 21 21 H 1.48502 * 109.46769 * 209.99494 * 19 17 15 22 22 H 1.48495 * 109.47280 * 329.99669 * 19 17 15 23 23 C 1.37878 * 119.39500 * 180.25559 * 10 9 8 24 24 H 1.09001 * 109.47296 * 90.00165 * 1 2 3 25 25 H 1.09004 * 109.47082 * 209.99896 * 1 2 3 26 26 H 1.09001 * 109.47446 * 330.00301 * 1 2 3 27 27 H 1.07999 * 120.01869 * 359.97438 * 3 2 1 28 28 H 1.07999 * 120.17033 * 0.02562 * 5 4 3 29 29 H 1.07993 * 119.50792 * 180.02562 * 6 5 4 30 30 H 1.08000 * 119.51880 * 179.97438 * 7 6 5 31 31 H 1.08002 * 120.16698 * 180.02562 * 8 7 6 32 32 H 0.96998 * 120.00070 * 0.02562 * 11 10 9 33 33 H 1.09001 * 109.47464 * 60.00646 * 12 11 10 34 34 H 1.09001 * 109.47459 * 300.00361 * 12 11 10 35 35 H 1.09001 * 109.47002 * 299.99701 * 13 12 11 36 36 H 1.08993 * 109.46955 * 60.00138 * 13 12 11 37 37 H 1.09001 * 109.47289 * 299.99953 * 14 13 12 38 38 H 1.09004 * 109.47261 * 59.99697 * 14 13 12 39 39 H 0.96999 * 119.99682 * 180.02562 * 18 17 15 40 40 H 1.08004 * 119.62739 * 179.70519 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1766 1.1858 0.0000 4 6 3.5817 1.1981 -0.0005 5 6 4.2992 2.4070 0.0000 6 6 5.6601 2.3825 0.0000 7 6 6.3556 1.1751 -0.0012 8 6 5.6935 -0.0147 -0.0009 9 6 4.2900 -0.0289 -0.0012 10 6 3.5697 -1.2426 -0.0014 11 7 4.2454 -2.4610 -0.0019 12 6 3.4911 -3.7169 -0.0027 13 6 4.4652 -4.8968 -0.0024 14 6 3.6775 -6.2084 -0.0039 15 6 4.6369 -7.3705 -0.0043 16 1 5.7019 -7.1916 -0.0031 17 6 4.1549 -8.6624 -0.0050 18 7 4.9922 -9.6766 -0.0048 19 14 2.3127 -8.9720 -0.0063 20 1 1.8255 -9.0535 -1.4068 21 1 2.0251 -10.2501 0.6930 22 1 1.6232 -7.8586 0.6937 23 6 2.1913 -1.2116 -0.0071 24 1 -0.3634 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6280 2.1160 -0.0004 28 1 3.7733 3.3503 0.0012 29 1 6.2088 3.3127 0.0008 30 1 7.4355 1.1831 -0.0016 31 1 6.2456 -0.9430 -0.0013 32 1 5.2153 -2.4777 -0.0017 33 1 2.8638 -3.7634 -0.8929 34 1 2.8633 -3.7643 0.8871 35 1 5.0933 -4.8497 -0.8920 36 1 5.0921 -4.8501 0.8879 37 1 3.0490 -6.2559 0.8855 38 1 3.0507 -6.2548 -0.8945 39 1 4.6531 -10.5854 -0.0058 40 1 1.6364 -2.1381 -0.0121 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168436309.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:57 Heat of formation + Delta-G solvation = 5.219285 kcal Electronic energy + Delta-G solvation = -19142.678877 eV Core-core repulsion = 16306.198963 eV Total energy + Delta-G solvation = -2836.479913 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39347 -38.35594 -37.23175 -35.66340 -33.98301 -32.34867 -32.04580 -29.90588 -28.48256 -27.39849 -24.99644 -23.65040 -23.00745 -22.04261 -21.75558 -19.02440 -18.30411 -18.07813 -17.19055 -16.42943 -16.35787 -16.23705 -15.66130 -15.00293 -14.98955 -14.84585 -14.71596 -14.10305 -14.06516 -13.82755 -13.71764 -13.36339 -13.03025 -12.85761 -12.67326 -12.57026 -12.16345 -11.94657 -11.80763 -11.69992 -11.62837 -11.56863 -11.35044 -11.10585 -10.78142 -9.80251 -9.38597 -8.31164 -7.96096 -6.36076 -0.17996 0.15205 1.26406 1.36442 1.38225 1.50082 2.18004 2.35393 2.39953 3.04506 3.26334 3.79921 3.86105 4.01359 4.08878 4.14712 4.17167 4.35452 4.44296 4.47763 4.54774 4.60107 4.67993 4.83183 4.86794 4.88439 4.91118 4.97609 5.01359 5.16694 5.21350 5.27080 5.41527 5.45556 5.52757 5.61113 5.62144 5.62908 5.80856 5.95537 6.14734 6.24552 6.37609 6.71892 6.73373 7.28823 8.85664 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024702 B = 0.003637 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.245821 B = 7696.347079 C = 8798.541169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.034 4.034 3 C -0.189 4.189 4 C -0.024 4.024 5 C -0.127 4.127 6 C -0.108 4.108 7 C -0.140 4.140 8 C -0.109 4.109 9 C -0.126 4.126 10 C 0.222 3.778 11 N -0.736 5.736 12 C 0.133 3.867 13 C -0.103 4.103 14 C -0.008 4.008 15 C -0.535 4.535 16 H 0.031 0.969 17 C 0.002 3.998 18 N -0.952 5.952 19 Si 0.953 3.047 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.243 1.243 23 C -0.241 4.241 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.141 0.859 31 H 0.123 0.877 32 H 0.402 0.598 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.023 0.977 39 H 0.267 0.733 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.053 26.670 -0.001 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.035 4.035 3 C -0.209 4.209 4 C -0.025 4.025 5 C -0.145 4.145 6 C -0.126 4.126 7 C -0.158 4.158 8 C -0.128 4.128 9 C -0.128 4.128 10 C 0.116 3.884 11 N -0.363 5.363 12 C 0.009 3.991 13 C -0.141 4.141 14 C -0.046 4.046 15 C -0.573 4.573 16 H 0.049 0.951 17 C -0.195 4.195 18 N -0.593 5.593 19 Si 0.776 3.224 20 H -0.191 1.191 21 H -0.211 1.211 22 H -0.166 1.166 23 C -0.266 4.266 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.100 0.900 27 H 0.159 0.841 28 H 0.166 0.834 29 H 0.166 0.834 30 H 0.159 0.841 31 H 0.141 0.859 32 H 0.238 0.762 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.075 0.925 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.143 26.286 0.004 26.994 hybrid contribution 0.242 -1.118 -0.027 1.144 sum -5.901 25.168 -0.023 25.851 Atomic orbital electron populations 1.20873 0.89603 1.03472 1.03048 1.19591 0.97134 0.92030 0.94740 1.20780 0.92343 0.98330 1.09440 1.18173 0.94185 0.92496 0.97652 1.21294 0.94775 0.97122 1.01308 1.21202 0.94508 0.98811 0.98088 1.21053 1.01098 0.92133 1.01557 1.21003 0.92716 0.99321 0.99726 1.17951 0.94102 0.92048 1.08718 1.18000 0.92143 0.85212 0.92998 1.44792 1.08707 1.02510 1.80298 1.21364 0.94537 0.81926 1.01245 1.21464 0.97944 0.93251 1.01405 1.19434 0.95677 0.92462 0.97023 1.21484 0.93748 0.91521 1.50592 0.95071 1.26065 1.03575 0.95796 0.94027 1.70073 1.37207 0.99453 1.52575 0.85621 0.79293 0.78253 0.79278 1.19095 1.21097 1.16613 1.20525 0.91900 0.98852 1.15321 0.90281 0.91471 0.90029 0.84110 0.83382 0.83362 0.84148 0.85873 0.76196 0.91925 0.92000 0.92588 0.92598 0.95717 0.95836 0.92466 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 9.97 71.24 0.71 -1.19 16 2 C -0.03 -0.79 5.84 -20.13 -0.12 -0.91 16 3 C -0.19 -4.18 9.35 22.34 0.21 -3.97 16 4 C -0.02 -0.59 5.74 -21.31 -0.12 -0.72 16 5 C -0.13 -2.41 9.77 22.35 0.22 -2.19 16 6 C -0.11 -1.86 9.95 22.04 0.22 -1.64 16 7 C -0.14 -2.71 9.95 22.05 0.22 -2.49 16 8 C -0.11 -2.57 9.50 22.30 0.21 -2.36 16 9 C -0.13 -3.37 5.75 -21.20 -0.12 -3.49 16 10 C 0.22 6.33 6.67 38.58 0.26 6.58 16 11 N -0.74 -20.77 5.66 -338.64 -1.92 -22.68 16 12 C 0.13 4.06 4.91 86.38 0.42 4.48 16 13 C -0.10 -3.81 5.27 30.60 0.16 -3.65 16 14 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 15 C -0.54 -30.72 9.66 25.60 0.25 -30.48 16 16 H 0.03 1.97 7.99 -2.91 -0.02 1.94 16 17 C 0.00 0.12 5.47 84.66 0.46 0.58 16 18 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 19 Si 0.95 43.78 27.47 68.60 1.88 45.66 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 23 C -0.24 -6.54 8.92 22.40 0.20 -6.34 16 24 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.07 1.11 8.08 -2.38 -0.02 1.09 16 26 H 0.08 1.08 8.07 -2.39 -0.02 1.06 16 27 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 28 H 0.15 1.96 8.06 -2.91 -0.02 1.93 16 29 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 30 H 0.14 2.02 8.06 -2.91 -0.02 1.99 16 31 H 0.12 2.65 6.44 -2.91 -0.02 2.63 16 32 H 0.40 10.50 6.58 -92.71 -0.61 9.89 16 33 H 0.06 1.87 7.93 -2.39 -0.02 1.85 16 34 H 0.06 1.85 7.95 -2.39 -0.02 1.84 16 35 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 38 H 0.02 1.02 7.57 -2.38 -0.02 1.00 16 39 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 40 H 0.12 3.18 6.69 -2.91 -0.02 3.16 16 Total: -1.00 -67.86 328.06 3.93 -63.94 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 0.36 Total: 20.73 kcal Atomic # 6 Polarization: -51.31 SS G_CDS: 3.30 Total: -48.02 kcal Atomic # 7 Polarization: -80.70 SS G_CDS: -1.62 Total: -82.31 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 1.88 Total: 45.66 kcal Total: -67.86 3.93 -63.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168436309.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.158 kcal (2) G-P(sol) polarization free energy of solvation -67.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds