Wall clock time and date at job start Mon Mar 30 2020 01:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99733 * 2 1 4 4 H 1.48498 * 109.46939 * 269.99363 * 3 2 1 5 5 H 1.48496 * 109.47139 * 30.00061 * 3 2 1 6 6 H 1.48502 * 109.46787 * 149.99777 * 3 2 1 7 7 C 1.37876 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99880 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00277 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47358 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47147 * 180.02562 * 10 9 7 12 12 N 1.46905 * 109.47176 * 179.97438 * 11 10 9 13 13 C 1.46896 * 111.00157 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47032 * 324.99861 * 13 12 11 15 15 C 1.52991 * 109.47289 * 84.99814 * 13 12 11 16 16 C 1.52997 * 109.50623 * 180.15794 * 15 13 12 17 17 C 1.53016 * 109.47097 * 299.84863 * 16 15 13 18 18 C 1.52959 * 109.44781 * 59.77075 * 17 16 15 19 19 C 1.52963 * 109.82417 * 300.34940 * 18 17 16 20 20 O 1.43688 * 109.45534 * 180.18245 * 18 17 16 21 21 C 1.44800 * 104.79898 * 215.88580 * 20 18 17 22 22 C 1.54919 * 101.72291 * 36.06507 * 21 20 18 23 23 O 1.43324 * 109.63340 * 60.84654 * 18 17 16 24 24 H 0.97001 * 120.00191 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47282 * 60.00089 * 9 7 2 26 26 H 1.08996 * 109.47484 * 300.00132 * 9 7 2 27 27 H 1.09001 * 109.46909 * 59.99790 * 10 9 7 28 28 H 1.09002 * 109.46964 * 300.00018 * 10 9 7 29 29 H 1.09001 * 109.47491 * 60.00020 * 11 10 9 30 30 H 1.09002 * 109.47099 * 299.99808 * 11 10 9 31 31 H 1.00903 * 110.99882 * 303.95617 * 12 11 10 32 32 H 1.09000 * 109.46476 * 60.14813 * 15 13 12 33 33 H 1.08998 * 109.46354 * 300.16793 * 15 13 12 34 34 H 1.09005 * 109.47312 * 179.85140 * 16 15 13 35 35 H 1.08997 * 109.47527 * 59.84815 * 16 15 13 36 36 H 1.08998 * 109.47957 * 179.76295 * 17 16 15 37 37 H 1.09002 * 109.47552 * 299.78631 * 17 16 15 38 38 H 1.09001 * 109.46980 * 299.67213 * 19 18 17 39 39 H 1.09001 * 109.47714 * 179.65831 * 19 18 17 40 40 H 1.08999 * 110.97857 * 277.95645 * 21 20 18 41 41 H 1.08994 * 111.00939 * 154.18396 * 21 20 18 42 42 H 1.09008 * 110.69364 * 206.07290 * 22 21 20 43 43 H 1.09004 * 110.84228 * 82.94407 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0014 9 6 3.5115 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 6 5.5516 -2.6364 0.0022 12 7 6.0414 -4.0214 0.0027 13 6 7.5098 -4.0606 0.0033 14 1 7.8957 -3.2289 -0.5862 15 6 8.0224 -3.9481 1.4404 16 6 9.5519 -3.9849 1.4415 17 6 10.0309 -5.3055 0.8348 18 6 9.5141 -5.4238 -0.6000 19 6 7.9850 -5.3814 -0.6058 20 8 9.9601 -6.6658 -1.1684 21 6 10.2232 -6.3624 -2.5597 22 6 10.7891 -4.9233 -2.4665 23 8 10.0284 -4.3426 -1.3878 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6800 0.8911 26 1 3.8753 -0.6804 -0.8888 27 1 3.6586 -3.1501 -0.8892 28 1 3.6579 -3.1505 0.8907 29 1 5.9143 -2.1229 0.8927 30 1 5.9156 -2.1223 -0.8873 31 1 5.6652 -4.5377 0.7838 32 1 7.6386 -4.7813 2.0292 33 1 7.6813 -3.0087 1.8752 34 1 9.9167 -3.9021 2.4654 35 1 9.9359 -3.1533 0.8507 36 1 11.1206 -5.3300 0.8317 37 1 9.6502 -6.1371 1.4278 38 1 7.5963 -6.2131 -0.0183 39 1 7.6232 -5.4600 -1.6309 40 1 9.3034 -6.3830 -3.1442 41 1 10.9629 -7.0463 -2.9757 42 1 10.6159 -4.3804 -3.3958 43 1 11.8516 -4.9393 -2.2236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169909372.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:31 Heat of formation + Delta-G solvation = -112.124311 kcal Electronic energy + Delta-G solvation = -21163.805091 eV Core-core repulsion = 18014.927858 eV Total energy + Delta-G solvation = -3148.877233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.09852 -38.07221 -35.38951 -35.16263 -33.28629 -31.57921 -30.81219 -29.28968 -27.97411 -26.02668 -23.64664 -22.51654 -22.47006 -21.52346 -20.29644 -19.67941 -17.42830 -16.95804 -16.64808 -15.92070 -15.46219 -15.15919 -14.90021 -14.39143 -14.16194 -14.08187 -13.65806 -13.42903 -13.17470 -13.03713 -12.72620 -12.50208 -12.40014 -12.06420 -11.80601 -11.69329 -11.37723 -11.11065 -10.91931 -10.78336 -10.75813 -10.67218 -10.43445 -9.93762 -9.79865 -9.67319 -9.44090 -9.13104 -8.50146 -8.15802 -6.00583 -3.98124 3.10948 3.33375 3.40294 3.44415 3.64682 4.16686 4.30058 4.47778 4.48557 4.58190 4.73603 4.76775 4.90289 4.99548 5.03205 5.15349 5.24479 5.29381 5.33312 5.33613 5.45236 5.57503 5.62165 5.68717 5.78176 5.80772 5.87944 5.96547 5.99728 6.17249 6.19559 6.24160 6.61176 6.63332 6.87083 6.96559 7.27851 7.39461 7.48859 7.63883 7.84393 8.59022 9.05122 9.62208 11.13048 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.032999 B = 0.003267 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.318422 B = 8568.585419 C = 8647.774040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.518 4.518 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.058 3.942 12 N -0.686 5.686 13 C 0.094 3.906 14 H 0.084 0.916 15 C -0.153 4.153 16 C -0.109 4.109 17 C -0.118 4.118 18 C 0.259 3.741 19 C -0.121 4.121 20 O -0.373 6.373 21 C 0.015 3.985 22 C 0.019 3.981 23 O -0.371 6.371 24 H 0.262 0.738 25 H 0.013 0.987 26 H 0.011 0.989 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.024 0.976 30 H 0.066 0.934 31 H 0.339 0.661 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.099 0.901 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.032 -12.053 -1.607 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.556 4.556 8 H 0.090 0.910 9 C -0.051 4.051 10 C -0.138 4.138 11 C -0.071 4.071 12 N -0.316 5.316 13 C -0.017 4.017 14 H 0.102 0.898 15 C -0.192 4.192 16 C -0.147 4.147 17 C -0.156 4.156 18 C 0.182 3.818 19 C -0.160 4.160 20 O -0.294 6.294 21 C -0.061 4.061 22 C -0.057 4.057 23 O -0.292 6.292 24 H 0.072 0.928 25 H 0.031 0.969 26 H 0.029 0.971 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.157 0.843 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.125 0.875 42 H 0.117 0.883 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 24.788 -11.984 -2.137 27.615 hybrid contribution 0.545 1.124 0.708 1.436 sum 25.332 -10.859 -1.429 27.599 Atomic orbital electron populations 1.69922 1.06300 1.26809 1.51442 1.25046 0.94735 0.99179 0.94666 0.86763 0.80314 0.83617 0.78489 1.20298 1.21447 1.19080 1.21164 0.89568 0.94448 1.50434 0.91036 1.19541 0.97108 0.92347 0.96085 1.21446 0.91201 0.99597 1.01518 1.22165 0.97444 0.87640 0.99807 1.60571 1.06017 1.15100 1.49867 1.21426 0.88269 0.97469 0.94515 0.89807 1.22340 0.96045 1.02361 0.98436 1.21373 0.95595 0.97050 1.00703 1.21807 1.01276 0.99226 0.93291 1.23378 0.92949 0.74580 0.90883 1.22062 0.92127 0.98794 1.02991 1.89243 1.86948 1.31150 1.22030 1.24369 1.01330 0.96331 0.84097 1.24174 0.96539 0.93465 0.91539 1.88924 1.69252 1.30155 1.40918 0.92801 0.96869 0.97076 0.92008 0.93066 0.95734 0.91566 0.84343 0.91721 0.91483 0.91510 0.91016 0.91095 0.90273 0.90289 0.90606 0.90424 0.87533 0.88315 0.90847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 2 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -15.16 9.66 -34.44 -0.33 -15.49 16 8 H 0.07 2.25 7.99 -52.48 -0.42 1.83 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.10 -2.03 5.41 -26.73 -0.14 -2.17 16 11 C 0.06 0.97 5.48 -3.82 -0.02 0.95 16 12 N -0.69 -9.88 6.25 -106.72 -0.67 -10.55 16 13 C 0.09 1.17 2.33 -67.71 -0.16 1.01 16 14 H 0.08 1.17 7.37 -51.93 -0.38 0.79 16 15 C -0.15 -1.66 5.17 -26.74 -0.14 -1.80 16 16 C -0.11 -1.06 5.79 -26.72 -0.15 -1.21 16 17 C -0.12 -1.15 5.33 -26.74 -0.14 -1.29 16 18 C 0.26 2.80 1.02 -26.77 -0.03 2.78 16 19 C -0.12 -1.41 4.89 -26.74 -0.13 -1.54 16 20 O -0.37 -4.01 10.99 -59.04 -0.65 -4.66 16 21 C 0.02 0.12 7.91 38.17 0.30 0.42 16 22 C 0.02 0.15 8.07 38.17 0.31 0.46 16 23 O -0.37 -4.14 9.61 -59.04 -0.57 -4.71 16 24 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 25 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 27 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.02 0.40 7.43 -51.93 -0.39 0.02 16 30 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 31 H 0.34 4.58 8.47 -39.29 -0.33 4.25 16 32 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.07 0.78 7.45 -51.93 -0.39 0.39 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.76 7.72 -51.93 -0.40 0.36 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 334.86 15.07 5.05 5.05 Total: -1.00 -32.09 334.86 -9.31 -41.41 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -7.73 Total: 0.16 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.85 Total: -16.50 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.11 Total: -38.25 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -1.22 Total: -9.37 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.09 -9.31 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169909372.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.716 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds