Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00035 * 2 1 4 4 H 1.48499 * 109.47073 * 270.00010 * 3 2 1 5 5 H 1.48500 * 109.47196 * 29.99701 * 3 2 1 6 6 H 1.48493 * 109.47124 * 149.99898 * 3 2 1 7 7 C 1.37871 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00399 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00028 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.28503 * 59.30115 * 9 7 2 11 11 C 1.54258 * 110.32113 * 297.17182 * 9 7 2 12 12 C 1.54380 * 105.06087 * 240.99911 * 11 9 7 13 13 N 1.48558 * 104.59237 * 23.85687 * 12 11 9 14 14 C 1.46909 * 110.99909 * 200.95889 * 13 12 11 15 15 C 1.53004 * 109.47017 * 284.39289 * 14 13 12 16 16 H 1.08999 * 109.47117 * 54.73086 * 15 14 13 17 17 C 1.52995 * 109.46824 * 174.73248 * 15 14 13 18 18 C 1.52999 * 109.46937 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46836 * 299.99634 * 18 17 15 20 20 C 1.52999 * 109.47278 * 60.00156 * 19 18 17 21 21 C 1.52996 * 109.47047 * 294.73171 * 15 14 13 22 22 H 1.09004 * 109.47346 * 60.00086 * 21 15 14 23 23 O 1.42901 * 109.47293 * 299.99782 * 21 15 14 24 24 C 1.48720 * 104.28882 * 320.57162 * 13 12 11 25 25 H 0.96998 * 119.99717 * 0.02562 * 1 2 3 26 26 H 0.96697 * 113.99746 * 300.70056 * 10 9 7 27 27 H 1.09006 * 110.32852 * 359.89681 * 11 9 7 28 28 H 1.08997 * 110.32259 * 122.00391 * 11 9 7 29 29 H 1.08997 * 110.41199 * 142.63354 * 12 11 9 30 30 H 1.08998 * 110.41394 * 264.96256 * 12 11 9 31 31 H 1.08996 * 109.46826 * 44.39810 * 14 13 12 32 32 H 1.09005 * 109.46904 * 164.39551 * 14 13 12 33 33 H 1.09005 * 109.47004 * 299.99445 * 17 15 14 34 34 H 1.08999 * 109.47406 * 60.00015 * 17 15 14 35 35 H 1.08999 * 109.47482 * 59.99545 * 18 17 15 36 36 H 1.09000 * 109.46918 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.47535 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47254 * 300.00475 * 19 18 17 39 39 H 1.08999 * 109.47063 * 60.00074 * 20 19 18 40 40 H 1.08999 * 109.47141 * 180.02562 * 20 19 18 41 41 H 0.96701 * 114.00584 * 179.97438 * 23 21 15 42 42 H 1.08999 * 110.38908 * 280.64187 * 24 13 12 43 43 H 1.09002 * 110.51087 * 158.14661 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4112 -2.5863 -1.1523 11 6 0.4106 -2.6325 1.2872 12 6 0.9569 -3.8914 1.9944 13 7 2.3420 -4.0393 1.4783 14 6 2.8235 -5.4166 1.6500 15 6 3.1826 -5.6519 3.1185 16 1 2.3261 -5.4056 3.7460 17 6 3.5586 -7.1209 3.3224 18 6 3.9171 -7.3564 4.7911 19 6 5.1024 -6.4685 5.1754 20 6 4.7265 -4.9995 4.9714 21 6 4.3680 -4.7641 3.5023 22 1 4.1002 -3.7175 3.3569 23 8 5.4910 -5.0870 2.6797 24 6 2.2363 -3.6871 0.0372 25 1 -0.4849 0.8400 -0.0004 26 1 -0.2433 -1.8774 -1.2166 27 1 0.5444 -1.7548 1.9196 28 1 -0.6428 -2.7627 1.0394 29 1 0.9672 -3.7462 3.0746 30 1 0.3573 -4.7638 1.7346 31 1 2.0418 -6.1147 1.3506 32 1 3.7067 -5.5726 1.0304 33 1 2.7140 -7.7534 3.0491 34 1 4.4151 -7.3672 2.6950 35 1 3.0603 -7.1102 5.4183 36 1 4.1854 -8.4029 4.9362 37 1 5.3582 -6.6365 6.2215 38 1 5.9592 -6.7147 4.5481 39 1 3.8697 -4.7533 5.5986 40 1 5.5711 -4.3670 5.2448 41 1 6.2806 -4.5613 2.8678 42 1 1.8391 -4.5280 -0.5311 43 1 3.2081 -3.3872 -0.3549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171533601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = -116.942820 kcal Electronic energy + Delta-G solvation = -22158.979811 eV Core-core repulsion = 19009.893631 eV Total energy + Delta-G solvation = -3149.086179 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.44492 -37.94681 -35.02179 -34.71875 -32.03645 -31.89262 -29.87588 -28.73333 -27.79672 -25.12832 -23.74177 -22.49520 -21.35743 -20.08751 -19.61391 -19.07122 -16.97067 -16.61203 -15.58302 -15.24696 -14.88665 -14.75908 -14.43891 -14.06590 -13.79482 -13.37692 -12.98726 -12.90840 -12.56025 -12.34197 -12.04719 -11.78005 -11.64693 -11.40016 -11.24238 -11.05809 -11.04330 -10.71655 -10.65491 -10.47987 -10.39793 -10.23420 -10.17008 -9.93942 -9.77102 -9.40851 -8.96438 -8.51763 -8.06257 -7.70944 -6.12091 -4.17094 3.28295 3.35010 3.39438 4.37863 4.39818 4.70495 4.75454 4.79920 4.98686 5.16925 5.24072 5.33246 5.46590 5.52501 5.56313 5.69831 5.76438 5.82076 5.92517 5.96030 6.00056 6.03991 6.08486 6.17122 6.21877 6.26716 6.30400 6.37535 6.45230 6.48807 6.61173 6.65652 6.94451 7.14107 7.29867 7.62735 7.74535 7.81428 7.91559 7.92592 8.27914 8.85469 9.48467 9.58560 10.95580 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.005112 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.543060 B = 5475.740977 C = 6002.270086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.065 3.935 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.062 0.938 9 C 0.248 3.752 10 O -0.596 6.596 11 C -0.120 4.120 12 C 0.031 3.969 13 N -0.498 5.498 14 C 0.051 3.949 15 C -0.068 4.068 16 H 0.076 0.924 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.114 4.114 20 C -0.154 4.154 21 C 0.117 3.883 22 H 0.073 0.927 23 O -0.561 6.561 24 C 0.055 3.945 25 H 0.265 0.735 26 H 0.382 0.618 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.370 0.630 42 H 0.028 0.972 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 -10.834 9.415 15.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.208 3.792 10 O -0.405 6.405 11 C -0.159 4.159 12 C -0.097 4.097 13 N -0.222 5.222 14 C -0.078 4.078 15 C -0.087 4.087 16 H 0.094 0.906 17 C -0.150 4.150 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.192 4.192 21 C 0.058 3.942 22 H 0.091 0.909 23 O -0.366 6.366 24 C -0.072 4.072 25 H 0.075 0.925 26 H 0.233 0.767 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.044 0.956 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.216 0.784 42 H 0.047 0.953 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.772 -11.332 9.334 16.168 hybrid contribution -0.172 1.313 0.114 1.329 sum 6.600 -10.019 9.448 15.271 Atomic orbital electron populations 1.69666 1.05899 1.27201 1.51555 1.25004 0.94963 0.99344 0.94282 0.86489 0.79876 0.82888 0.78112 1.20645 1.21272 1.19831 1.21664 0.93552 0.90404 1.49772 0.92009 1.19271 0.86220 0.91652 0.82018 1.86080 1.52095 1.54771 1.47569 1.22841 0.98195 0.95386 0.99478 1.23163 0.88996 0.98287 0.99207 1.65272 1.21351 1.20911 1.14648 1.22240 0.99609 0.89877 0.96029 1.21078 0.96369 0.94294 0.96955 0.90599 1.21493 1.01347 0.95810 0.96313 1.21503 0.98160 0.99035 0.96718 1.21430 0.98581 0.94817 1.00299 1.22306 1.01597 0.96886 0.98409 1.21690 0.86079 0.99087 0.87320 0.90945 1.86465 1.22840 1.65145 1.62149 1.22974 1.00071 0.97042 0.87158 0.92517 0.76670 0.90858 0.93227 0.91909 0.95536 0.95571 0.90442 0.92572 0.91135 0.92399 0.92409 0.92810 0.91514 0.91376 0.92122 0.78415 0.95349 0.90612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.51 10.83 55.43 0.60 -23.91 16 2 C 0.06 1.75 5.04 -17.82 -0.09 1.66 16 3 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.11 8.07 -34.44 -0.28 -14.39 16 8 H 0.06 1.71 7.54 -52.48 -0.40 1.31 16 9 C 0.25 6.32 1.06 -90.39 -0.10 6.23 16 10 O -0.60 -15.95 12.94 -35.23 -0.46 -16.41 16 11 C -0.12 -2.84 5.60 -25.35 -0.14 -2.98 16 12 C 0.03 0.62 5.94 -2.18 -0.01 0.61 16 13 N -0.50 -9.85 4.79 -229.83 -1.10 -10.96 16 14 C 0.05 0.85 4.15 -3.82 -0.02 0.84 16 15 C -0.07 -0.95 2.08 -90.62 -0.19 -1.14 16 16 H 0.08 1.08 7.33 -51.93 -0.38 0.70 16 17 C -0.11 -1.34 5.06 -26.73 -0.14 -1.48 16 18 C -0.12 -1.21 5.92 -26.73 -0.16 -1.36 16 19 C -0.11 -1.15 5.78 -26.73 -0.15 -1.31 16 20 C -0.15 -1.69 5.64 -26.71 -0.15 -1.84 16 21 C 0.12 1.58 3.10 -26.71 -0.08 1.50 16 22 H 0.07 1.15 7.76 -51.93 -0.40 0.75 16 23 O -0.56 -7.47 11.21 -35.23 -0.39 -7.87 16 24 C 0.06 1.25 5.74 -2.09 -0.01 1.24 16 25 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 26 H 0.38 10.34 7.19 45.56 0.33 10.67 16 27 H 0.07 1.88 7.33 -51.93 -0.38 1.50 16 28 H 0.05 1.18 7.98 -51.93 -0.41 0.77 16 29 H 0.06 1.14 7.75 -51.93 -0.40 0.74 16 30 H 0.03 0.50 7.74 -51.93 -0.40 0.10 16 31 H 0.03 0.43 7.75 -51.93 -0.40 0.03 16 32 H 0.08 1.34 7.46 -51.93 -0.39 0.96 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.91 7.68 -51.93 -0.40 0.51 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.70 7.68 -51.93 -0.40 0.31 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.37 3.62 9.08 45.56 0.41 4.04 16 42 H 0.03 0.63 7.94 -51.93 -0.41 0.22 16 43 H 0.08 1.74 7.68 -51.93 -0.40 1.34 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -28.40 326.86 -9.07 -37.47 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -6.11 Total: 13.13 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -1.52 Total: -12.45 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: -0.50 Total: -34.86 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.85 Total: -24.28 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.40 -9.07 -37.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171533601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.472 kcal (2) G-P(sol) polarization free energy of solvation -28.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds