Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 120.00035 * 2 1 4 4 H 1.48499 * 109.47073 * 270.00010 * 3 2 1 5 5 H 1.48500 * 109.47196 * 29.99701 * 3 2 1 6 6 H 1.48493 * 109.47124 * 149.99898 * 3 2 1 7 7 C 1.37871 * 120.00123 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00399 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00028 * 0.02562 * 7 2 1 10 10 O 1.42900 * 110.28503 * 59.30115 * 9 7 2 11 11 C 1.54258 * 110.32113 * 297.17182 * 9 7 2 12 12 C 1.54380 * 105.06087 * 240.99911 * 11 9 7 13 13 N 1.48558 * 104.59237 * 23.85687 * 12 11 9 14 14 C 1.46909 * 110.99909 * 200.95889 * 13 12 11 15 15 C 1.53004 * 109.47017 * 284.39289 * 14 13 12 16 16 H 1.08999 * 109.47117 * 54.73086 * 15 14 13 17 17 C 1.52995 * 109.46824 * 174.73248 * 15 14 13 18 18 C 1.52999 * 109.46937 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.46836 * 299.99634 * 18 17 15 20 20 C 1.52999 * 109.47278 * 60.00156 * 19 18 17 21 21 C 1.52996 * 109.47047 * 294.73171 * 15 14 13 22 22 H 1.09004 * 109.47346 * 60.00086 * 21 15 14 23 23 O 1.42901 * 109.47293 * 299.99782 * 21 15 14 24 24 C 1.48720 * 104.28882 * 320.57162 * 13 12 11 25 25 H 0.96998 * 119.99717 * 0.02562 * 1 2 3 26 26 H 0.96697 * 113.99746 * 300.70056 * 10 9 7 27 27 H 1.09006 * 110.32852 * 359.89681 * 11 9 7 28 28 H 1.08997 * 110.32259 * 122.00391 * 11 9 7 29 29 H 1.08997 * 110.41199 * 142.63354 * 12 11 9 30 30 H 1.08998 * 110.41394 * 264.96256 * 12 11 9 31 31 H 1.08996 * 109.46826 * 44.39810 * 14 13 12 32 32 H 1.09005 * 109.46904 * 164.39551 * 14 13 12 33 33 H 1.09005 * 109.47004 * 299.99445 * 17 15 14 34 34 H 1.08999 * 109.47406 * 60.00015 * 17 15 14 35 35 H 1.08999 * 109.47482 * 59.99545 * 18 17 15 36 36 H 1.09000 * 109.46918 * 180.02562 * 18 17 15 37 37 H 1.08996 * 109.47535 * 180.02562 * 19 18 17 38 38 H 1.09006 * 109.47254 * 300.00475 * 19 18 17 39 39 H 1.08999 * 109.47063 * 60.00074 * 20 19 18 40 40 H 1.08999 * 109.47141 * 180.02562 * 20 19 18 41 41 H 0.96701 * 114.00584 * 179.97438 * 23 21 15 42 42 H 1.08999 * 110.38908 * 280.64187 * 24 13 12 43 43 H 1.09002 * 110.51087 * 158.14661 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.4112 -2.5863 -1.1523 11 6 0.4106 -2.6325 1.2872 12 6 0.9569 -3.8914 1.9944 13 7 2.3420 -4.0393 1.4783 14 6 2.8235 -5.4166 1.6500 15 6 3.1826 -5.6519 3.1185 16 1 2.3261 -5.4056 3.7460 17 6 3.5586 -7.1209 3.3224 18 6 3.9171 -7.3564 4.7911 19 6 5.1024 -6.4685 5.1754 20 6 4.7265 -4.9995 4.9714 21 6 4.3680 -4.7641 3.5023 22 1 4.1002 -3.7175 3.3569 23 8 5.4910 -5.0870 2.6797 24 6 2.2363 -3.6871 0.0372 25 1 -0.4849 0.8400 -0.0004 26 1 -0.2433 -1.8774 -1.2166 27 1 0.5444 -1.7548 1.9196 28 1 -0.6428 -2.7627 1.0394 29 1 0.9672 -3.7462 3.0746 30 1 0.3573 -4.7638 1.7346 31 1 2.0418 -6.1147 1.3506 32 1 3.7067 -5.5726 1.0304 33 1 2.7140 -7.7534 3.0491 34 1 4.4151 -7.3672 2.6950 35 1 3.0603 -7.1102 5.4183 36 1 4.1854 -8.4029 4.9362 37 1 5.3582 -6.6365 6.2215 38 1 5.9592 -6.7147 4.5481 39 1 3.8697 -4.7533 5.5986 40 1 5.5711 -4.3670 5.2448 41 1 6.2806 -4.5613 2.8678 42 1 1.8391 -4.5280 -0.5311 43 1 3.2081 -3.3872 -0.3549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171533601.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = -138.063897 kcal Electronic energy + Delta-G solvation = -22159.895689 eV Core-core repulsion = 19009.893631 eV Total energy + Delta-G solvation = -3150.002058 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65890 -39.53327 -36.70852 -35.81955 -34.13629 -33.23001 -30.94300 -30.20616 -29.62850 -26.86697 -25.30402 -23.44255 -22.67285 -21.40601 -21.34625 -20.38849 -19.04245 -17.63198 -16.98655 -16.85327 -16.59142 -16.12340 -15.73148 -15.66399 -15.17142 -14.80720 -14.26842 -14.20991 -13.97969 -13.76580 -13.58336 -13.29759 -13.15732 -12.89125 -12.77058 -12.52179 -12.39102 -12.32110 -12.19566 -12.08073 -11.91227 -11.65493 -11.53035 -11.34283 -10.93848 -10.81639 -10.59219 -10.40648 -10.12167 -9.30119 -8.18536 -6.31116 1.41049 1.42744 1.52780 2.41392 2.95713 3.15447 3.56280 3.74107 3.87498 3.97101 4.07452 4.17108 4.27782 4.29369 4.35362 4.44828 4.53035 4.56651 4.61140 4.65369 4.77069 4.78532 4.81640 4.85070 5.04488 5.04501 5.07417 5.18414 5.26237 5.31795 5.34972 5.36819 5.40842 5.49475 5.64038 5.66467 5.78378 6.01163 6.18929 6.29711 6.73335 7.03270 7.37338 7.45983 8.87681 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.005112 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.543060 B = 5475.740977 C = 6002.270086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.050 0.950 9 C 0.231 3.769 10 O -0.604 6.604 11 C -0.112 4.112 12 C 0.041 3.959 13 N -0.500 5.500 14 C 0.054 3.946 15 C -0.066 4.066 16 H 0.077 0.923 17 C -0.106 4.106 18 C -0.115 4.115 19 C -0.111 4.111 20 C -0.148 4.148 21 C 0.119 3.881 22 H 0.043 0.957 23 O -0.574 6.574 24 C 0.062 3.938 25 H 0.268 0.732 26 H 0.377 0.623 27 H 0.048 0.952 28 H 0.040 0.960 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.384 0.616 42 H 0.028 0.972 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.361 -11.620 10.973 17.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.173 4.173 3 Si 0.784 3.216 4 H -0.203 1.203 5 H -0.205 1.205 6 H -0.197 1.197 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.192 3.808 10 O -0.413 6.413 11 C -0.151 4.151 12 C -0.086 4.086 13 N -0.224 5.224 14 C -0.074 4.074 15 C -0.085 4.085 16 H 0.095 0.905 17 C -0.144 4.144 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.186 4.186 21 C 0.060 3.940 22 H 0.061 0.939 23 O -0.381 6.381 24 C -0.066 4.066 25 H 0.077 0.923 26 H 0.227 0.773 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.232 0.768 42 H 0.046 0.954 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.532 -12.130 10.900 17.963 hybrid contribution -0.399 1.560 -0.412 1.662 sum 7.132 -10.570 10.488 16.510 Atomic orbital electron populations 1.69743 1.06758 1.27995 1.51258 1.25663 0.95810 1.02129 0.93735 0.85558 0.78702 0.79232 0.78103 1.20327 1.20513 1.19742 1.21833 0.93188 0.91865 1.50922 0.93204 1.19538 0.86772 0.92262 0.82237 1.86073 1.52159 1.54508 1.48576 1.22623 0.97549 0.96298 0.98597 1.23084 0.88880 0.96759 0.99918 1.65272 1.21327 1.23332 1.12495 1.22289 0.99116 0.87925 0.98059 1.21080 0.96705 0.95978 0.94722 0.90498 1.21443 1.01174 0.94174 0.97630 1.21510 0.98463 1.00013 0.95249 1.21418 0.98294 0.93845 1.01255 1.22242 1.02132 0.97989 0.96261 1.21576 0.86144 0.97203 0.89104 0.93916 1.86428 1.23466 1.65581 1.62585 1.22800 0.98642 0.95991 0.89123 0.92270 0.77261 0.93348 0.94122 0.89845 0.94218 0.95106 0.91329 0.91961 0.92083 0.91850 0.90950 0.91117 0.91939 0.91186 0.91022 0.76775 0.95365 0.91688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.20 10.83 21.45 0.23 -49.96 16 2 C 0.03 1.41 5.04 84.65 0.43 1.83 16 3 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 7 C -0.54 -30.08 8.07 25.60 0.21 -29.87 16 8 H 0.05 2.82 7.54 -2.91 -0.02 2.80 16 9 C 0.23 11.99 1.06 -10.64 -0.01 11.98 16 10 O -0.60 -33.00 12.94 -148.98 -1.93 -34.93 16 11 C -0.11 -5.34 5.60 31.49 0.18 -5.16 16 12 C 0.04 1.60 5.94 86.45 0.51 2.12 16 13 N -0.50 -19.63 4.79 -881.03 -4.22 -23.85 16 14 C 0.05 1.76 4.15 86.30 0.36 2.12 16 15 C -0.07 -1.74 2.08 -10.80 -0.02 -1.76 16 16 H 0.08 2.02 7.33 -2.39 -0.02 2.00 16 17 C -0.11 -2.32 5.06 30.59 0.15 -2.17 16 18 C -0.11 -2.03 5.92 30.59 0.18 -1.85 16 19 C -0.11 -1.92 5.78 30.59 0.18 -1.74 16 20 C -0.15 -2.93 5.64 30.61 0.17 -2.76 16 21 C 0.12 3.06 3.10 30.61 0.09 3.15 16 22 H 0.04 1.35 7.76 -2.39 -0.02 1.33 16 23 O -0.57 -14.69 11.21 -148.98 -1.67 -16.36 16 24 C 0.06 2.86 5.74 86.42 0.50 3.36 16 25 H 0.27 13.95 8.31 -92.71 -0.77 13.18 16 26 H 0.38 20.92 7.19 -74.06 -0.53 20.38 16 27 H 0.05 2.51 7.33 -2.38 -0.02 2.49 16 28 H 0.04 1.96 7.98 -2.39 -0.02 1.94 16 29 H 0.08 2.90 7.75 -2.39 -0.02 2.88 16 30 H 0.04 1.44 7.74 -2.39 -0.02 1.42 16 31 H 0.03 0.97 7.75 -2.39 -0.02 0.95 16 32 H 0.07 2.35 7.46 -2.38 -0.02 2.33 16 33 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.06 1.46 7.68 -2.39 -0.02 1.44 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.15 7.68 -2.38 -0.02 1.14 16 39 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.38 7.12 9.08 -74.06 -0.67 6.44 16 42 H 0.03 1.27 7.94 -2.39 -0.02 1.25 16 43 H 0.06 3.06 7.68 -2.39 -0.02 3.05 16 Total: -1.00 -60.35 326.86 -2.85 -63.20 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.21 Total: 37.28 kcal Atomic # 6 Polarization: -23.69 SS G_CDS: 2.92 Total: -20.76 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -3.99 Total: -73.82 kcal Atomic # 8 Polarization: -47.69 SS G_CDS: -3.60 Total: -51.29 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -60.35 -2.85 -63.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171533601.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.864 kcal (2) G-P(sol) polarization free energy of solvation -60.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds