Wall clock time and date at job start Mon Mar 30 2020 01:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48506 * 109.47006 * 270.00144 * 3 2 1 5 5 H 1.48495 * 109.47410 * 29.99779 * 3 2 1 6 6 H 1.48503 * 109.47291 * 150.00497 * 3 2 1 7 7 C 1.37877 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00008 * 359.97438 * 7 2 1 10 10 O 1.42904 * 110.87239 * 62.39295 * 9 7 2 11 11 C 1.55140 * 110.99045 * 298.54779 * 9 7 2 12 12 C 1.54321 * 103.01779 * 206.25331 * 11 9 7 13 13 N 1.47446 * 107.23249 * 22.28438 * 12 11 9 14 14 C 1.46901 * 110.99819 * 123.26030 * 13 12 11 15 15 C 1.52991 * 109.47599 * 75.64709 * 14 13 12 16 16 H 1.09004 * 109.47143 * 305.81897 * 15 14 13 17 17 C 1.52995 * 109.47430 * 185.82049 * 15 14 13 18 18 C 1.53003 * 109.47460 * 179.97438 * 17 15 14 19 19 C 1.53002 * 109.46828 * 59.99838 * 18 17 15 20 20 C 1.52998 * 109.47108 * 299.99945 * 19 18 17 21 21 C 1.52995 * 109.47020 * 60.00363 * 20 19 18 22 22 H 1.09004 * 109.47471 * 59.99770 * 21 20 19 23 23 O 1.42899 * 109.47271 * 179.97438 * 21 20 19 24 24 C 1.47843 * 108.56814 * 0.98597 * 13 12 11 25 25 H 0.97003 * 120.00116 * 0.02562 * 1 2 3 26 26 H 0.96702 * 114.00060 * 297.60294 * 10 9 7 27 27 H 1.09000 * 110.70582 * 87.87254 * 11 9 7 28 28 H 1.09001 * 110.70257 * 324.63531 * 11 9 7 29 29 H 1.08999 * 109.89010 * 262.87511 * 12 11 9 30 30 H 1.09001 * 109.88752 * 141.68492 * 12 11 9 31 31 H 1.09001 * 109.46905 * 315.64250 * 14 13 12 32 32 H 1.09008 * 109.46779 * 195.64518 * 14 13 12 33 33 H 1.09006 * 109.47410 * 59.99937 * 17 15 14 34 34 H 1.09006 * 109.47259 * 299.99716 * 17 15 14 35 35 H 1.08996 * 109.46760 * 300.00174 * 18 17 15 36 36 H 1.09003 * 109.47053 * 180.02562 * 18 17 15 37 37 H 1.09003 * 109.46439 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47176 * 60.00591 * 19 18 17 39 39 H 1.08994 * 109.47204 * 300.00047 * 20 19 18 40 40 H 1.08998 * 109.46706 * 180.02562 * 20 19 18 41 41 H 0.96703 * 114.00106 * 300.00560 * 23 21 20 42 42 H 1.09001 * 110.36900 * 94.73397 * 24 13 12 43 43 H 1.08994 * 110.37465 * 217.07113 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 8 0.4602 -2.6304 -1.1835 11 6 0.3743 -2.6346 1.2721 12 6 0.2542 -4.1628 1.4504 13 7 1.3924 -4.7760 0.7416 14 6 2.1867 -5.6156 1.6484 15 6 1.4456 -6.9285 1.9084 16 1 0.4392 -6.7127 2.2673 17 6 2.2002 -7.7399 2.9633 18 6 1.4587 -9.0527 3.2237 19 6 1.3748 -9.8573 1.9251 20 6 0.6201 -9.0459 0.8702 21 6 1.3617 -7.7332 0.6098 22 1 2.3679 -7.9493 0.2507 23 8 0.6571 -6.9755 -0.3759 24 6 2.2187 -3.6984 0.1569 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2255 -1.9548 -1.2752 27 1 -0.6068 -2.1868 1.1137 28 1 0.8705 -2.1841 2.1317 29 1 -0.6835 -4.5138 1.0198 30 1 0.2966 -4.4169 2.5096 31 1 2.3371 -5.0903 2.5916 32 1 3.1539 -5.8283 1.1928 33 1 2.2596 -7.1668 3.8887 34 1 3.2066 -7.9558 2.6044 35 1 0.4525 -8.8365 3.5828 36 1 1.9961 -9.6305 3.9757 37 1 0.8469 -10.7927 2.1108 38 1 2.3810 -10.0735 1.5660 39 1 -0.3860 -8.8297 1.2293 40 1 0.5600 -9.6193 -0.0548 41 1 0.5661 -7.4256 -1.2270 42 1 3.0367 -3.4403 0.8295 43 1 2.6071 -4.0029 -0.8149 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171533602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:32 Heat of formation + Delta-G solvation = -110.138269 kcal Electronic energy + Delta-G solvation = -22165.635018 eV Core-core repulsion = 19016.843906 eV Total energy + Delta-G solvation = -3148.791112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 269.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.32957 -37.80583 -35.14977 -34.61564 -32.04665 -31.79279 -29.66335 -28.54510 -27.90124 -25.18430 -23.64452 -22.48018 -21.31004 -20.02288 -19.45441 -19.14861 -16.91853 -16.78180 -15.32233 -15.05401 -14.83971 -14.78309 -14.39143 -14.05347 -13.73295 -13.57645 -12.89174 -12.66772 -12.43062 -12.30123 -11.98310 -11.77117 -11.45844 -11.30186 -11.21906 -11.13881 -10.94091 -10.80761 -10.71065 -10.49343 -10.37780 -10.28697 -10.10081 -9.88857 -9.67040 -9.37298 -9.04337 -8.50562 -7.94399 -7.20173 -6.12957 -4.20981 3.26289 3.33049 3.36176 4.34525 4.42131 4.63154 4.67931 4.93124 5.01586 5.14290 5.23888 5.27906 5.39634 5.48015 5.52376 5.58313 5.76238 5.81331 5.89129 5.93745 6.00080 6.03818 6.10939 6.15509 6.19336 6.20008 6.28466 6.31053 6.40462 6.59041 6.66707 6.85992 7.04701 7.24581 7.55445 7.61074 7.86805 7.94260 8.08107 8.21465 8.30424 8.81463 9.47646 9.65188 10.93696 Molecular weight = 269.18amu Principal moments of inertia in cm(-1) A = 0.041304 B = 0.004437 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.740624 B = 6308.537591 C = 6530.211726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.253 3.747 10 O -0.576 6.576 11 C -0.145 4.145 12 C 0.049 3.951 13 N -0.497 5.497 14 C 0.060 3.940 15 C -0.074 4.074 16 H 0.075 0.925 17 C -0.113 4.113 18 C -0.120 4.120 19 C -0.116 4.116 20 C -0.154 4.154 21 C 0.121 3.879 22 H 0.042 0.958 23 O -0.520 6.520 24 C 0.060 3.940 25 H 0.265 0.735 26 H 0.374 0.626 27 H 0.074 0.926 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.026 0.974 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.358 0.642 42 H 0.038 0.962 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -16.344 4.820 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.131 4.131 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.574 4.574 8 H 0.077 0.923 9 C 0.213 3.787 10 O -0.384 6.384 11 C -0.184 4.184 12 C -0.078 4.078 13 N -0.220 5.220 14 C -0.069 4.069 15 C -0.093 4.093 16 H 0.093 0.907 17 C -0.151 4.151 18 C -0.157 4.157 19 C -0.154 4.154 20 C -0.192 4.192 21 C 0.061 3.939 22 H 0.060 0.940 23 O -0.322 6.322 24 C -0.067 4.067 25 H 0.075 0.925 26 H 0.223 0.777 27 H 0.093 0.907 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.202 0.798 42 H 0.057 0.943 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.899 -16.630 4.836 17.422 hybrid contribution 0.426 1.488 0.464 1.616 sum 2.325 -15.142 5.300 16.210 Atomic orbital electron populations 1.69750 1.05903 1.27196 1.50562 1.24991 0.94949 0.99286 0.93846 0.86515 0.79810 0.82933 0.78237 1.20469 1.21169 1.19911 1.21593 0.93489 0.90935 1.51376 0.92287 1.19498 0.86852 0.90480 0.81896 1.86164 1.51220 1.56507 1.44463 1.23252 1.02392 0.92333 1.00404 1.22803 0.95012 0.95573 0.94453 1.63534 1.07895 1.20093 1.30457 1.22199 0.96277 0.93675 0.94799 1.21137 1.00266 0.94507 0.93419 0.90697 1.21549 0.99117 0.95780 0.98701 1.21545 1.00807 0.96197 0.97161 1.21475 1.00427 0.98063 0.95412 1.22354 1.00553 0.97338 0.98962 1.21541 0.93641 0.89020 0.89665 0.94021 1.87022 1.78020 1.44186 1.22976 1.22954 0.95021 0.90654 0.98091 0.92502 0.77724 0.90733 0.93055 0.91908 0.95366 0.95619 0.92080 0.91626 0.91921 0.91950 0.92124 0.92238 0.92107 0.91409 0.92225 0.79825 0.94339 0.91530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.57 10.75 55.43 0.60 -23.97 16 2 C 0.07 1.94 5.29 -17.82 -0.09 1.85 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -14.85 8.27 -34.44 -0.28 -15.14 16 8 H 0.06 1.63 7.79 -52.49 -0.41 1.22 16 9 C 0.25 6.57 0.87 -89.64 -0.08 6.49 16 10 O -0.58 -15.77 13.16 -35.23 -0.46 -16.24 16 11 C -0.14 -3.51 5.38 -24.91 -0.13 -3.65 16 12 C 0.05 1.04 6.22 -2.83 -0.02 1.03 16 13 N -0.50 -10.15 3.29 -231.25 -0.76 -10.91 16 14 C 0.06 1.00 3.96 -3.83 -0.02 0.98 16 15 C -0.07 -1.04 2.07 -90.63 -0.19 -1.22 16 16 H 0.07 1.16 7.46 -51.93 -0.39 0.78 16 17 C -0.11 -1.24 5.20 -26.73 -0.14 -1.38 16 18 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 19 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 20 C -0.15 -1.64 5.54 -26.73 -0.15 -1.79 16 21 C 0.12 1.59 2.90 -26.73 -0.08 1.52 16 22 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 23 O -0.52 -8.24 11.43 -35.23 -0.40 -8.64 16 24 C 0.06 1.39 5.81 -2.30 -0.01 1.37 16 25 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 26 H 0.37 10.28 7.56 45.56 0.34 10.62 16 27 H 0.07 1.92 7.54 -51.93 -0.39 1.53 16 28 H 0.05 1.27 8.03 -51.93 -0.42 0.86 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.03 0.54 7.20 -51.93 -0.37 0.17 16 31 H 0.03 0.44 7.78 -51.93 -0.40 0.03 16 32 H 0.06 0.99 7.99 -51.92 -0.41 0.58 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.36 4.31 9.08 45.56 0.41 4.72 16 42 H 0.04 0.87 7.70 -51.93 -0.40 0.47 16 43 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -29.49 328.84 -8.83 -38.31 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -6.22 Total: 12.86 kcal Atomic # 6 Polarization: -10.94 SS G_CDS: -1.51 Total: -12.45 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.17 Total: -34.88 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.87 Total: -24.88 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.49 -8.83 -38.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171533602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.823 kcal (2) G-P(sol) polarization free energy of solvation -29.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds